RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ANAPC7Q9UJX3 599 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 PRRC2BQ5JSZ5 2229 aaKnown RBP11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ANKRD63C9JTQ0 380 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ATP6V1G2O95670 118 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 MAPK4P31152 587 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 MAPK6Q16659 721 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 GLRA4Q5JXX5 417 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 TRIM59Q8IWR1 403 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 UBL4BQ8N7F7 174 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 HDAC7Q8WUI4 952 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CDCA5Q96FF9 252 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ETNK1Q9HBU6 452 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 RBM12Q9NTZ6 932 aaKnown RBP11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 MAGED2Q9UNF1 606 aaPredicted RBP11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 PI4K2BG5E9Z4 385 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 OPLAHO14841 1288 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 BAG2O95816 211 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ZNF286BP0CG31 522 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CFAP157Q5JU67 520 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 DAB2IPQ5VWQ8 1189 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 TMEM154Q6P9G4 183 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 PSPC1Q8WXF1 523 aaKnown RBP11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 DLGAP2Q9P1A6 1054 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CPA4Q9UI42 421 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 C15orf41Q9Y2V0 281 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 TTLL3Q9Y4R7 772 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 BTAF1O14981 1849 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CCNE2O96020 404 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 VTNP04004 478 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CTSHP09668 335 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 PECAM1P16284 738 aaPredicted RBP11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 SLC18A3Q16572 532 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 FRMD5Q7Z6J6 570 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 KIF2BQ8N4N8 673 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 MCPH1Q8NEM0 835 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 SLC35C1Q96A29 364 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 RNF25Q96BH1 459 aaPredicted RBP11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CELF4Q9BZC1 486 aaKnown RBP11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CNOT8Q9UFF9 292 aaKnown RBP11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ITIH6Q6UXX5 1313 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CIB2O75838 187 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 HUNKP57058 714 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 PPP2R5DQ14738 602 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 AMHR2Q16671 573 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 PRAMEF19Q5SWL8 479 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ELOA2Q8IYF1 753 aaPredicted RBP11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 TATDN2Q93075 761 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 HSD17B14Q9BPX1 270 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 SPATC1LQ9H0A9 340 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 THAP2Q9H0W7 228 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ASCC2Q9H1I8 757 aaPredicted RBP11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 APEX2Q9UBZ4 518 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 SNX24Q9Y343 169 aa11.43□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 C4BP0C0L5 1744 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 C19orf81C9J6K1 198 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 GJB6O95452 261 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 KCNA3P22001 575 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 SFNP31947 248 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 DSG3P32926 999 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 SOX5P35711 763 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 MSH2P43246 934 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 KCNJ1P48048 391 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 MRPS35P82673 323 aaKnown RBP11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 PDE1CQ14123 709 aaPredicted RBP11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 WDR72Q3MJ13 1102 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ARMC3Q5W041 872 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 KRT39Q6A163 491 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ZNF449Q6P9G9 518 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 C1orf186Q6ZWK4 172 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 APTXQ7Z2E3 356 aaKnown RBP11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ANKRD13AQ8IZ07 590 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 RAB3IL1Q8TBN0 382 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 FBXO41Q8TF61 875 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 PRPF31Q8WWY3 499 aaKnown RBP11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 DNAJC7Q99615 494 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CYP26B1Q9NR63 512 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 PCSK1NQ9UHG2 260 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 VAV3Q9UKW4 847 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 REXO2Q9Y3B8 237 aaKnown RBP11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 GRAP2O75791 330 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 SGPL1O95470 568 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 HNRNPCP07910 306 aaKnown RBP eCLIP11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 HHATQ5VTY9 493 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 SLC35G2Q8TBE7 412 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ZNF507Q8TCN5 953 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 TXLNGQ9NUQ3 528 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 TBX20Q9UMR3 447 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 TNNC2P02585 160 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CCNA1P78396 465 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 EDRF1Q3B7T1 1238 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ANKRD20A8PQ5CZ79 823 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 FYB2Q5VWT5 728 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 LLGL2Q6P1M3 1020 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 FBXL13Q8NEE6 735 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 LENG9Q96B70 501 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ZWILCHQ9H900 591 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 PDGFCQ9NRA1 345 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 MTUS1Q9ULD2 1270 aa11.42□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 INTUQ9ULD6 942 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms