RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 CCDC94Q9BW85 323 aaPredicted RBP17.24■□□□□ 0.35
SMPD4-220ENST00000491319 IRF2BPLQ9H1B7 796 aa17.24■□□□□ 0.35
SMPD4-220ENST00000491319 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.24■□□□□ 0.35
SMPD4-220ENST00000491319 MTRRQ9UBK8 725 aa17.24■□□□□ 0.35
SMPD4-220ENST00000491319 COL4A3Q01955 1670 aa17.23■□□□□ 0.35
SMPD4-220ENST00000491319 MYO15AQ9UKN7 3530 aa17.23■□□□□ 0.35
SMPD4-220ENST00000491319 ABLIM1O14639 778 aa17.23■□□□□ 0.35
SMPD4-220ENST00000491319 PI15O43692 258 aa17.23■□□□□ 0.35
SMPD4-220ENST00000491319 HARSP12081 509 aaKnown RBP17.23■□□□□ 0.35
SMPD4-220ENST00000491319 AOC1P19801 751 aa17.23■□□□□ 0.35
SMPD4-220ENST00000491319 PROZP22891 400 aa17.23■□□□□ 0.35
SMPD4-220ENST00000491319 GJB2P29033 226 aa17.23■□□□□ 0.35
SMPD4-220ENST00000491319 OR1D2P34982 312 aa17.23■□□□□ 0.35
SMPD4-220ENST00000491319 BRCC3P46736 316 aa17.23■□□□□ 0.35
SMPD4-220ENST00000491319 YARSP54577 528 aaKnown RBP17.23■□□□□ 0.35
SMPD4-220ENST00000491319 HTR4Q13639 388 aa17.23■□□□□ 0.35
SMPD4-220ENST00000491319 DCLRE1AQ6PJP8 1040 aa17.23■□□□□ 0.35
SMPD4-220ENST00000491319 ALKAL1Q6UXT8 129 aa17.23■□□□□ 0.35
SMPD4-220ENST00000491319 RSPO2Q6UXX9 243 aaPredicted RBP17.23■□□□□ 0.35
SMPD4-220ENST00000491319 SLC44A3Q8N4M1 653 aa17.23■□□□□ 0.35
SMPD4-220ENST00000491319 SLC7A14Q8TBB6 771 aa17.23■□□□□ 0.35
SMPD4-220ENST00000491319 DDX27Q96GQ7 796 aaKnown RBP17.23■□□□□ 0.35
SMPD4-220ENST00000491319 SNX27Q96L92 541 aa17.23■□□□□ 0.35
SMPD4-220ENST00000491319 UROC1Q96N76 676 aa17.23■□□□□ 0.35
SMPD4-220ENST00000491319 ZMAT2Q96NC0 199 aaKnown RBP17.23■□□□□ 0.35
SMPD4-220ENST00000491319 PLIN2Q99541 437 aa17.23■□□□□ 0.35
SMPD4-220ENST00000491319 TOPORSQ9NS56 1045 aaPredicted RBP17.23■□□□□ 0.35
SMPD4-220ENST00000491319 CDY1Q9Y6F8 540 aa17.23■□□□□ 0.35
SMPD4-220ENST00000491319 KRBA1A5PL33 1030 aa17.22■□□□□ 0.35
SMPD4-220ENST00000491319 VWA3AA6NCI4 1184 aa17.22■□□□□ 0.35
SMPD4-220ENST00000491319 GFRA3O60609 400 aa17.22■□□□□ 0.35
SMPD4-220ENST00000491319 HNRNPA1P09651 372 aaKnown RBP eCLIP17.22■□□□□ 0.35
SMPD4-220ENST00000491319 SRFP11831 508 aa17.22■□□□□ 0.35
SMPD4-220ENST00000491319 FSHRP23945 695 aa17.22■□□□□ 0.35
SMPD4-220ENST00000491319 GUCY2CP25092 1073 aa17.22■□□□□ 0.35
SMPD4-220ENST00000491319 RAB33AQ14088 237 aa17.22■□□□□ 0.35
SMPD4-220ENST00000491319 XKR4Q5GH76 650 aa17.22■□□□□ 0.35
SMPD4-220ENST00000491319 HYIQ5T013 277 aa17.22■□□□□ 0.35
SMPD4-220ENST00000491319 AXDND1Q5T1B0 1012 aaPredicted RBP17.22■□□□□ 0.35
SMPD4-220ENST00000491319 MPZL3Q6UWV2 235 aa17.22■□□□□ 0.35
SMPD4-220ENST00000491319 ZBTB45Q96K62 511 aaPredicted RBP17.22■□□□□ 0.35
SMPD4-220ENST00000491319 C17orf75Q9HAS0 396 aa17.22■□□□□ 0.35
SMPD4-220ENST00000491319 DAXXQ9UER7 740 aaPredicted RBP17.22■□□□□ 0.35
SMPD4-220ENST00000491319 CA14Q9ULX7 337 aa17.22■□□□□ 0.35
SMPD4-220ENST00000491319 POLIQ9UNA4 740 aa17.22■□□□□ 0.35
SMPD4-220ENST00000491319 RBM19Q9Y4C8 960 aaKnown RBP17.22■□□□□ 0.35
SMPD4-220ENST00000491319 NUMBLQ9Y6R0 609 aa17.22■□□□□ 0.35
SMPD4-220ENST00000491319 FANCMQ8IYD8 2048 aa17.21■□□□□ 0.35
SMPD4-220ENST00000491319 ANHXE9PGG2 379 aa17.21■□□□□ 0.35
SMPD4-220ENST00000491319 H3BQV1 296 aa17.21■□□□□ 0.35
SMPD4-220ENST00000491319 MEFVO15553 781 aaPredicted RBP17.21■□□□□ 0.35
SMPD4-220ENST00000491319 MCF2P10911 925 aa17.21■□□□□ 0.35
SMPD4-220ENST00000491319 HOXA9P31269 272 aa17.21■□□□□ 0.35
SMPD4-220ENST00000491319 NXPE3Q969Y0 559 aa17.21■□□□□ 0.35
SMPD4-220ENST00000491319 ACAP3Q96P50 834 aa17.21■□□□□ 0.35
SMPD4-220ENST00000491319 TCHPQ9BT92 498 aa17.21■□□□□ 0.35
SMPD4-220ENST00000491319 TIPINQ9BVW5 301 aa17.21■□□□□ 0.35
SMPD4-220ENST00000491319 HCFC1R1Q9NWW0 138 aa17.21■□□□□ 0.35
SMPD4-220ENST00000491319 ANKFY1Q9P2R3 1169 aa17.21■□□□□ 0.35
SMPD4-220ENST00000491319 WNT16Q9UBV4 365 aa17.21■□□□□ 0.35
SMPD4-220ENST00000491319 VPS13AQ96RL7 3174 aa17.2■□□□□ 0.34
SMPD4-220ENST00000491319 ZFHX2Q9C0A1 2572 aaPredicted RBP17.2■□□□□ 0.34
SMPD4-220ENST00000491319 TCHHQ07283 1943 aa17.2■□□□□ 0.34
SMPD4-220ENST00000491319 FAM186AA6NE01 2351 aa17.2■□□□□ 0.34
SMPD4-220ENST00000491319 TSC2P49815 1807 aa17.2■□□□□ 0.34
SMPD4-220ENST00000491319 PATJQ8NI35 1801 aa17.2■□□□□ 0.34
SMPD4-220ENST00000491319 PODXLO00592 558 aa17.2■□□□□ 0.34
SMPD4-220ENST00000491319 TRAPPC3O43617 180 aa17.2■□□□□ 0.34
SMPD4-220ENST00000491319 XYLBO75191 536 aa17.2■□□□□ 0.34
SMPD4-220ENST00000491319 PLS3P13797 630 aa17.2■□□□□ 0.34
SMPD4-220ENST00000491319 SLC12A3P55017 1021 aa17.2■□□□□ 0.34
SMPD4-220ENST00000491319 CACNB1Q02641 598 aaPredicted RBP17.2■□□□□ 0.34
SMPD4-220ENST00000491319 NOLC1Q14978 699 aaKnown RBP eCLIP17.2■□□□□ 0.34
SMPD4-220ENST00000491319 TMEM119Q4V9L6 283 aa17.2■□□□□ 0.34
SMPD4-220ENST00000491319 SEZ6Q53EL9 994 aa17.2■□□□□ 0.34
SMPD4-220ENST00000491319 ANKS3Q6ZW76 656 aa17.2■□□□□ 0.34
SMPD4-220ENST00000491319 CCDC105Q8IYK2 499 aa17.2■□□□□ 0.34
SMPD4-220ENST00000491319 SYT2Q8N9I0 419 aaPredicted RBP17.2■□□□□ 0.34
SMPD4-220ENST00000491319 TMEM161BQ8NDZ6 487 aa17.2■□□□□ 0.34
SMPD4-220ENST00000491319 GPR152Q8TDT2 470 aa17.2■□□□□ 0.34
SMPD4-220ENST00000491319 SPIRE2Q8WWL2 714 aa17.2■□□□□ 0.34
SMPD4-220ENST00000491319 FGF14Q92915 247 aa17.2■□□□□ 0.34
SMPD4-220ENST00000491319 C18orf25Q96B23 403 aaPredicted RBP17.2■□□□□ 0.34
SMPD4-220ENST00000491319 CDK5RAP3Q96JB5 506 aa17.2■□□□□ 0.34
SMPD4-220ENST00000491319 RPP25Q9BUL9 199 aaKnown RBP17.2■□□□□ 0.34
SMPD4-220ENST00000491319 SLC38A7Q9NVC3 462 aa17.2■□□□□ 0.34
SMPD4-220ENST00000491319 CNTN3Q9P232 1028 aa17.2■□□□□ 0.34
SMPD4-220ENST00000491319 CDH7Q9ULB5 785 aa17.2■□□□□ 0.34
SMPD4-220ENST00000491319 NPHP3-ACAD11A0A0J9YXS1 232 aa17.19■□□□□ 0.34
SMPD4-220ENST00000491319 PLA2G4BP0C869 781 aa17.19■□□□□ 0.34
SMPD4-220ENST00000491319 MAPTP10636 758 aaKnown RBP17.19■□□□□ 0.34
SMPD4-220ENST00000491319 KCNE1P15382 129 aa17.19■□□□□ 0.34
SMPD4-220ENST00000491319 STRN3Q13033 797 aa17.19■□□□□ 0.34
SMPD4-220ENST00000491319 ARL6IP4Q66PJ3 421 aaKnown RBP17.19■□□□□ 0.34
SMPD4-220ENST00000491319 PARM1Q6UWI2 310 aa17.19■□□□□ 0.34
SMPD4-220ENST00000491319 ITFG1Q8TB96 612 aa17.19■□□□□ 0.34
SMPD4-220ENST00000491319 FGF13Q92913 245 aa17.19■□□□□ 0.34
SMPD4-220ENST00000491319 RTP3Q9BQQ7 232 aa17.19■□□□□ 0.34
SMPD4-220ENST00000491319 NTPCRQ9BSD7 190 aaKnown RBP17.19■□□□□ 0.34
SMPD4-220ENST00000491319 TBC1D17Q9HA65 648 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms