RNA–Protein interactions for RNA: ENST00000489072.5

HMGN1-217, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,014 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-217ENST00000489072 PALB2Q86YC2 1186 aa27.32■■□□□ 1.96
HMGN1-217ENST00000489072 C3orf58Q8NDZ4 430 aa27.32■■□□□ 1.96
HMGN1-217ENST00000489072 UROC1Q96N76 676 aa27.32■■□□□ 1.96
HMGN1-217ENST00000489072 MYO10Q9HD67 2058 aa27.32■■□□□ 1.96
HMGN1-217ENST00000489072 B3GAT3O94766 335 aa27.31■■□□□ 1.96
HMGN1-217ENST00000489072 PIGRP01833 764 aa27.31■■□□□ 1.96
HMGN1-217ENST00000489072 HSP90AA1P07900 732 aaKnown RBP27.31■■□□□ 1.96
HMGN1-217ENST00000489072 SPATA31D3P0C874 917 aa27.31■■□□□ 1.96
HMGN1-217ENST00000489072 COL9A1P20849 921 aa27.31■■□□□ 1.96
HMGN1-217ENST00000489072 ATAT1Q5SQI0 421 aa27.31■■□□□ 1.96
HMGN1-217ENST00000489072 SPATA31D4Q6ZUB0 917 aa27.31■■□□□ 1.96
HMGN1-217ENST00000489072 DYMQ7RTS9 669 aa27.31■■□□□ 1.96
HMGN1-217ENST00000489072 GPR149Q86SP6 731 aa27.31■■□□□ 1.96
HMGN1-217ENST00000489072 CEP57Q86XR8 500 aa27.31■■□□□ 1.96
HMGN1-217ENST00000489072 LNX1Q8TBB1 728 aaPredicted RBP27.31■■□□□ 1.96
HMGN1-217ENST00000489072 PIK3R5Q8WYR1 880 aa27.31■■□□□ 1.96
HMGN1-217ENST00000489072 PANK2Q9BZ23 570 aa27.31■■□□□ 1.96
HMGN1-217ENST00000489072 RAPGEFL1Q9UHV5 662 aa27.31■■□□□ 1.96
HMGN1-217ENST00000489072 MYMKA6NI61 221 aa27.3■■□□□ 1.96
HMGN1-217ENST00000489072 SPDYE4A6NLX3 237 aa27.3■■□□□ 1.96
HMGN1-217ENST00000489072 TGM5O43548 720 aa27.3■■□□□ 1.96
HMGN1-217ENST00000489072 SCP2P22307 547 aa27.3■■□□□ 1.96
HMGN1-217ENST00000489072 MATR3P43243 847 aaKnown RBP eCLIP27.3■■□□□ 1.96
HMGN1-217ENST00000489072 LIG4P49917 911 aa27.3■■□□□ 1.96
HMGN1-217ENST00000489072 ELAVL2Q12926 359 aaKnown RBP27.3■■□□□ 1.96
HMGN1-217ENST00000489072 SPRYD3Q8NCJ5 442 aa27.3■■□□□ 1.96
HMGN1-217ENST00000489072 DDX12PQ92771 950 aa27.3■■□□□ 1.96
HMGN1-217ENST00000489072 C18orf25Q96B23 403 aaPredicted RBP27.3■■□□□ 1.96
HMGN1-217ENST00000489072 ZNF396Q96N95 335 aaPredicted RBP27.3■■□□□ 1.96
HMGN1-217ENST00000489072 TSHZ2Q9NRE2 1034 aa27.3■■□□□ 1.96
HMGN1-217ENST00000489072 SLC38A7Q9NVC3 462 aa27.3■■□□□ 1.96
HMGN1-217ENST00000489072 C2CD4DB7Z1M9 353 aa27.29■■□□□ 1.96
HMGN1-217ENST00000489072 HNRNPDLO14979 420 aaKnown RBP27.29■■□□□ 1.96
HMGN1-217ENST00000489072 SPTLC2O15270 562 aa27.29■■□□□ 1.96
HMGN1-217ENST00000489072 ZSCAN22P10073 491 aaPredicted RBP27.29■■□□□ 1.96
HMGN1-217ENST00000489072 CXCL8P10145 99 aa27.29■■□□□ 1.96
HMGN1-217ENST00000489072 GTF2BQ00403 316 aa27.29■■□□□ 1.96
HMGN1-217ENST00000489072 CREMQ03060 361 aa27.29■■□□□ 1.96
HMGN1-217ENST00000489072 PSMD5Q16401 504 aa27.29■■□□□ 1.96
HMGN1-217ENST00000489072 ZC2HC1CQ53FD0 456 aaPredicted RBP27.29■■□□□ 1.96
HMGN1-217ENST00000489072 SLC39A4Q6P5W5 647 aa27.29■■□□□ 1.96
HMGN1-217ENST00000489072 LILRA6Q6PI73 481 aa27.29■■□□□ 1.96
HMGN1-217ENST00000489072 SV2BQ7L1I2 683 aa27.29■■□□□ 1.96
HMGN1-217ENST00000489072 SFR1Q86XK3 245 aa27.29■■□□□ 1.96
HMGN1-217ENST00000489072 DNAJC19Q96DA6 116 aa27.29■■□□□ 1.96
HMGN1-217ENST00000489072 CLSTN3Q9BQT9 956 aa27.29■■□□□ 1.96
HMGN1-217ENST00000489072 I3L4J1 428 aa27.28■■□□□ 1.96
HMGN1-217ENST00000489072 FAM189A1O60320 539 aa27.28■■□□□ 1.96
HMGN1-217ENST00000489072 RFPL2O75678 378 aa27.28■■□□□ 1.96
HMGN1-217ENST00000489072 C1RP00736 705 aa27.28■■□□□ 1.96
HMGN1-217ENST00000489072 FGFR3P22607 806 aa27.28■■□□□ 1.96
HMGN1-217ENST00000489072 TNFSF9P41273 254 aa27.28■■□□□ 1.96
HMGN1-217ENST00000489072 BRCC3P46736 316 aa27.28■■□□□ 1.96
HMGN1-217ENST00000489072 PKP1Q13835 747 aa27.28■■□□□ 1.96
HMGN1-217ENST00000489072 ZBTB41Q5SVQ8 909 aa27.28■■□□□ 1.96
HMGN1-217ENST00000489072 PDZRN4Q6ZMN7 1036 aaPredicted RBP27.28■■□□□ 1.96
HMGN1-217ENST00000489072 CCDC73Q6ZRK6 1079 aa27.28■■□□□ 1.96
HMGN1-217ENST00000489072 MAP4K3Q8IVH8 894 aa27.28■■□□□ 1.96
HMGN1-217ENST00000489072 CMASQ8NFW8 434 aaPredicted RBP27.28■■□□□ 1.96
HMGN1-217ENST00000489072 NR2E1Q9Y466 385 aa27.28■■□□□ 1.96
HMGN1-217ENST00000489072 PODXLO00592 558 aa27.27■■□□□ 1.96
HMGN1-217ENST00000489072 ADAM12O43184 909 aa27.27■■□□□ 1.96
HMGN1-217ENST00000489072 F13A1P00488 732 aa27.27■■□□□ 1.96
HMGN1-217ENST00000489072 CLTAP09496 248 aa27.27■■□□□ 1.96
HMGN1-217ENST00000489072 STAT6P42226 847 aa27.27■■□□□ 1.96
HMGN1-217ENST00000489072 FOXD4L6Q3SYB3 417 aaPredicted RBP27.27■■□□□ 1.96
HMGN1-217ENST00000489072 FOXD4L3Q6VB84 417 aaPredicted RBP27.27■■□□□ 1.96
HMGN1-217ENST00000489072 C15orf39Q6ZRI6 1047 aa27.27■■□□□ 1.96
HMGN1-217ENST00000489072 TMEM130Q8N3G9 435 aa27.27■■□□□ 1.96
HMGN1-217ENST00000489072 HDAC7Q8WUI4 952 aa27.27■■□□□ 1.96
HMGN1-217ENST00000489072 DDX27Q96GQ7 796 aaKnown RBP27.27■■□□□ 1.96
HMGN1-217ENST00000489072 ST6GALNAC4Q9H4F1 302 aa27.27■■□□□ 1.96
HMGN1-217ENST00000489072 TTC26A0AVF1 554 aa27.26■■□□□ 1.95
HMGN1-217ENST00000489072 PPP6R2O75170 966 aa27.26■■□□□ 1.95
HMGN1-217ENST00000489072 YEATS4O95619 227 aa27.26■■□□□ 1.95
HMGN1-217ENST00000489072 TKTP29401 623 aaKnown RBP27.26■■□□□ 1.95
HMGN1-217ENST00000489072 PDILTQ8N807 584 aa27.26■■□□□ 1.95
HMGN1-217ENST00000489072 EDAQ92838 391 aa27.26■■□□□ 1.95
HMGN1-217ENST00000489072 PLEKHA4Q9H4M7 779 aa27.26■■□□□ 1.95
HMGN1-217ENST00000489072 DPP7Q9UHL4 492 aa27.26■■□□□ 1.95
HMGN1-217ENST00000489072 DOCK6Q96HP0 2047 aa27.26■■□□□ 1.95
HMGN1-217ENST00000489072 A0A0B4J269 797 aa27.25■■□□□ 1.95
HMGN1-217ENST00000489072 CCDC195A0A1B0GUA6 201 aa27.25■■□□□ 1.95
HMGN1-217ENST00000489072 PRR33A8MZF0 331 aa27.25■■□□□ 1.95
HMGN1-217ENST00000489072 TISP43B9A030 160 aa27.25■■□□□ 1.95
HMGN1-217ENST00000489072 ANKRD63C9JTQ0 380 aa27.25■■□□□ 1.95
HMGN1-217ENST00000489072 OGTO15294 1046 aa27.25■■□□□ 1.95
HMGN1-217ENST00000489072 PDIA4P13667 645 aaKnown RBP27.25■■□□□ 1.95
HMGN1-217ENST00000489072 SPAG1Q07617 926 aa27.25■■□□□ 1.95
HMGN1-217ENST00000489072 ZNF720Q7Z2F6 126 aa27.25■■□□□ 1.95
HMGN1-217ENST00000489072 KREMEN2Q8NCW0 462 aa27.25■■□□□ 1.95
HMGN1-217ENST00000489072 ZNF707Q96C28 371 aaPredicted RBP27.25■■□□□ 1.95
HMGN1-217ENST00000489072 IKZF4Q9H2S9 585 aa27.25■■□□□ 1.95
HMGN1-217ENST00000489072 PLEKHA5Q9HAU0 1116 aa27.25■■□□□ 1.95
HMGN1-217ENST00000489072 TUBGCP4Q9UGJ1 667 aa27.25■■□□□ 1.95
HMGN1-217ENST00000489072 ANK1P16157 1881 aa27.24■■□□□ 1.95
HMGN1-217ENST00000489072 PPP1R37O75864 691 aa27.24■■□□□ 1.95
HMGN1-217ENST00000489072 PAPLNO95428 1278 aa27.24■■□□□ 1.95
HMGN1-217ENST00000489072 ABCD1P33897 745 aa27.24■■□□□ 1.95
HMGN1-217ENST00000489072 ZXDAP98168 799 aa27.24■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms