RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-231ENST00000488905 ZSCAN31Q96LW9 406 aaPredicted RBP20.24■□□□□ 0.83
HDAC6-231ENST00000488905 GOLGA2P5Q9HBQ8 144 aa20.24■□□□□ 0.83
HDAC6-231ENST00000488905 POLIQ9UNA4 740 aa20.24■□□□□ 0.83
HDAC6-231ENST00000488905 COL4A3Q01955 1670 aa20.23■□□□□ 0.83
HDAC6-231ENST00000488905 IGFBP6P24592 240 aaPredicted RBP20.23■□□□□ 0.83
HDAC6-231ENST00000488905 U2AF2P26368 475 aaKnown RBP eCLIP20.23■□□□□ 0.831e-10■■□□□ 12.6
HDAC6-231ENST00000488905 TKTP29401 623 aaKnown RBP20.23■□□□□ 0.83
HDAC6-231ENST00000488905 GRM5P41594 1212 aa20.23■□□□□ 0.83
HDAC6-231ENST00000488905 NPTX2P47972 431 aa20.23■□□□□ 0.83
HDAC6-231ENST00000488905 PEX3P56589 373 aa20.23■□□□□ 0.83
HDAC6-231ENST00000488905 PTGDRQ13258 359 aa20.23■□□□□ 0.83
HDAC6-231ENST00000488905 DMP1Q13316 513 aaPredicted RBP20.23■□□□□ 0.83
HDAC6-231ENST00000488905 UPP1Q16831 310 aa20.23■□□□□ 0.83
HDAC6-231ENST00000488905 ZNF568Q3ZCX4 644 aa20.23■□□□□ 0.83
HDAC6-231ENST00000488905 DCLRE1AQ6PJP8 1040 aa20.23■□□□□ 0.83
HDAC6-231ENST00000488905 PARM1Q6UWI2 310 aa20.23■□□□□ 0.83
HDAC6-231ENST00000488905 DAW1Q8N136 415 aa20.23■□□□□ 0.83
HDAC6-231ENST00000488905 C3orf58Q8NDZ4 430 aa20.23■□□□□ 0.83
HDAC6-231ENST00000488905 FGF13Q92913 245 aa20.23■□□□□ 0.83
HDAC6-231ENST00000488905 DDX27Q96GQ7 796 aaKnown RBP20.23■□□□□ 0.83
HDAC6-231ENST00000488905 CDT1Q9H211 546 aa20.23■□□□□ 0.83
HDAC6-231ENST00000488905 TOPORSQ9NS56 1045 aaPredicted RBP20.23■□□□□ 0.83
HDAC6-231ENST00000488905 PCDHB6Q9Y5E3 794 aa20.23■□□□□ 0.83
HDAC6-231ENST00000488905 CDY1Q9Y6F8 540 aa20.23■□□□□ 0.83
HDAC6-231ENST00000488905 CCDC169A6NNP5 214 aa20.22■□□□□ 0.83
HDAC6-231ENST00000488905 E9PMD0 336 aa20.22■□□□□ 0.83
HDAC6-231ENST00000488905 TRAPPC3O43617 180 aa20.22■□□□□ 0.83
HDAC6-231ENST00000488905 HIP1RO75146 1068 aa20.22■□□□□ 0.83
HDAC6-231ENST00000488905 TOB1P50616 345 aaPredicted RBP20.22■□□□□ 0.83
HDAC6-231ENST00000488905 YARSP54577 528 aaKnown RBP20.22■□□□□ 0.83
HDAC6-231ENST00000488905 UVSSAQ2YD98 709 aa20.22■□□□□ 0.83
HDAC6-231ENST00000488905 CD300LGQ6UXG3 332 aa20.22■□□□□ 0.83
HDAC6-231ENST00000488905 RSPO2Q6UXX9 243 aaPredicted RBP20.22■□□□□ 0.83
HDAC6-231ENST00000488905 MTSS1LQ765P7 747 aa20.22■□□□□ 0.83
HDAC6-231ENST00000488905 ACO2Q99798 780 aaKnown RBP20.22■□□□□ 0.83
HDAC6-231ENST00000488905 RPP25Q9BUL9 199 aaKnown RBP20.22■□□□□ 0.83
HDAC6-231ENST00000488905 CCDC94Q9BW85 323 aaPredicted RBP20.22■□□□□ 0.83
HDAC6-231ENST00000488905 MRPL4Q9BYD3 311 aaKnown RBP20.22■□□□□ 0.83
HDAC6-231ENST00000488905 ARHGAP28Q9P2N2 729 aa20.22■□□□□ 0.83
HDAC6-231ENST00000488905 DNM3Q9UQ16 869 aa20.22■□□□□ 0.83
HDAC6-231ENST00000488905 BACE2Q9Y5Z0 518 aa20.22■□□□□ 0.83
HDAC6-231ENST00000488905 SMIM28A0A1B0GU29 152 aa20.21■□□□□ 0.83
HDAC6-231ENST00000488905 PP2D1A8MPX8 630 aa20.21■□□□□ 0.83
HDAC6-231ENST00000488905 LAD1O00515 517 aa20.21■□□□□ 0.83
HDAC6-231ENST00000488905 SOX4Q06945 474 aaPredicted RBP20.21■□□□□ 0.83
HDAC6-231ENST00000488905 XKR4Q5GH76 650 aa20.21■□□□□ 0.83
HDAC6-231ENST00000488905 KRT79Q5XKE5 535 aa20.21■□□□□ 0.83
HDAC6-231ENST00000488905 ANKS3Q6ZW76 656 aa20.21■□□□□ 0.83
HDAC6-231ENST00000488905 TAS1R3Q7RTX0 852 aa20.21■□□□□ 0.83
HDAC6-231ENST00000488905 ITFG1Q8TB96 612 aa20.21■□□□□ 0.83
HDAC6-231ENST00000488905 SNX27Q96L92 541 aa20.21■□□□□ 0.83
HDAC6-231ENST00000488905 DRC1Q96MC2 740 aa20.21■□□□□ 0.83
HDAC6-231ENST00000488905 TMEM134Q9H6X4 195 aa20.21■□□□□ 0.83
HDAC6-231ENST00000488905 PTPRHQ9HD43 1115 aa20.21■□□□□ 0.83
HDAC6-231ENST00000488905 HCFC1R1Q9NWW0 138 aa20.21■□□□□ 0.83
HDAC6-231ENST00000488905 DLGAP2Q9P1A6 1054 aa20.21■□□□□ 0.83
HDAC6-231ENST00000488905 DNAH14Q0VDD8 3507 aa20.2■□□□□ 0.82
HDAC6-231ENST00000488905 I3L4J1 428 aa20.2■□□□□ 0.82
HDAC6-231ENST00000488905 DCNP07585 359 aaKnown RBP20.2■□□□□ 0.82
HDAC6-231ENST00000488905 PRPHP41219 470 aa20.2■□□□□ 0.82
HDAC6-231ENST00000488905 BRCC3P46736 316 aa20.2■□□□□ 0.82
HDAC6-231ENST00000488905 OSTNP61366 133 aa20.2■□□□□ 0.82
HDAC6-231ENST00000488905 MAPK7Q13164 816 aa20.2■□□□□ 0.82
HDAC6-231ENST00000488905 PABPC1LQ4VXU2 614 aaKnown RBP20.2■□□□□ 0.82
HDAC6-231ENST00000488905 SPECC1Q5M775 1068 aa20.2■□□□□ 0.82
HDAC6-231ENST00000488905 ALKAL1Q6UXT8 129 aa20.2■□□□□ 0.82
HDAC6-231ENST00000488905 RTL10Q7L3V2 364 aa20.2■□□□□ 0.82
HDAC6-231ENST00000488905 NPAS3Q8IXF0 933 aa20.2■□□□□ 0.82
HDAC6-231ENST00000488905 PJA1Q8NG27 643 aa20.2■□□□□ 0.82
HDAC6-231ENST00000488905 KIF2CQ99661 725 aa20.2■□□□□ 0.82
HDAC6-231ENST00000488905 RUSC1Q9BVN2 902 aa20.2■□□□□ 0.82
HDAC6-231ENST00000488905 KMT5AQ9NQR1 393 aa20.2■□□□□ 0.82
HDAC6-231ENST00000488905 SLC38A7Q9NVC3 462 aa20.2■□□□□ 0.82
HDAC6-231ENST00000488905 KCNH3Q9ULD8 1083 aa20.2■□□□□ 0.82
HDAC6-231ENST00000488905 SIT1Q9Y3P8 196 aa20.2■□□□□ 0.82
HDAC6-231ENST00000488905 OTOGLQ3ZCN5 2332 aa20.19■□□□□ 0.82
HDAC6-231ENST00000488905 PODXLO00592 558 aa20.19■□□□□ 0.82
HDAC6-231ENST00000488905 PROZP22891 400 aa20.19■□□□□ 0.82
HDAC6-231ENST00000488905 GPC5P78333 572 aa20.19■□□□□ 0.82
HDAC6-231ENST00000488905 RINT1Q6NUQ1 792 aa20.19■□□□□ 0.82
HDAC6-231ENST00000488905 ADSSL1Q8N142 457 aa20.19■□□□□ 0.82
HDAC6-231ENST00000488905 ZMAT2Q96NC0 199 aaKnown RBP20.19■□□□□ 0.82
HDAC6-231ENST00000488905 TARS2Q9BW92 718 aaKnown RBP20.19■□□□□ 0.82
HDAC6-231ENST00000488905 FOXQ1Q9C009 403 aa20.19■□□□□ 0.82
HDAC6-231ENST00000488905 DNMT3BQ9UBC3 853 aaKnown RBP20.19■□□□□ 0.82
HDAC6-231ENST00000488905 ABLIM1O14639 778 aa20.18■□□□□ 0.82
HDAC6-231ENST00000488905 MCF2P10911 925 aa20.18■□□□□ 0.82
HDAC6-231ENST00000488905 CDC25AP30304 524 aa20.18■□□□□ 0.82
HDAC6-231ENST00000488905 STARD6P59095 220 aa20.18■□□□□ 0.82
HDAC6-231ENST00000488905 ROR1Q01973 937 aa20.18■□□□□ 0.82
HDAC6-231ENST00000488905 IL17AQ16552 155 aa20.18■□□□□ 0.82
HDAC6-231ENST00000488905 VARS2Q5ST30 1063 aaKnown RBP20.18■□□□□ 0.82
HDAC6-231ENST00000488905 SLC8B1Q6J4K2 584 aa20.18■□□□□ 0.82
HDAC6-231ENST00000488905 MPZL3Q6UWV2 235 aa20.18■□□□□ 0.82
HDAC6-231ENST00000488905 C1orf186Q6ZWK4 172 aa20.18■□□□□ 0.82
HDAC6-231ENST00000488905 KCNK18Q7Z418 384 aa20.18■□□□□ 0.82
HDAC6-231ENST00000488905 ING5Q8WYH8 240 aa20.18■□□□□ 0.82
HDAC6-231ENST00000488905 SHDQ96IW2 340 aa20.18■□□□□ 0.82
HDAC6-231ENST00000488905 MMTAG2Q9BU76 263 aaKnown RBP20.18■□□□□ 0.82
HDAC6-231ENST00000488905 C17orf75Q9HAS0 396 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms