RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 CCDC92Q53HC0 331 aaPredicted RBP6.62□□□□□ -1.35
VPS13D-209ENST00000487188 MDH1BQ5I0G3 518 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 CLNKQ7Z7G1 428 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 HOMEZQ8IX15 550 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 STKLD1Q8NE28 680 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 ATL2Q8NHH9 583 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 ATG4AQ8WYN0 398 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 COA7Q96BR5 231 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 RBM17Q96I25 401 aaKnown RBP6.62□□□□□ -1.35
VPS13D-209ENST00000487188 ECSITQ9BQ95 431 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 STK33Q9BYT3 514 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 OSBPL8Q9BZF1 889 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 MAD2L2Q9UI95 211 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 ACTL7BQ9Y614 415 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 IKBKGQ9Y6K9 419 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 COL14A1Q05707 1796 aaKnown RBP6.62□□□□□ -1.35
VPS13D-209ENST00000487188 A8MXQ7 604 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 B2RBV5 119 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 SPECC1L-ADORA2AF8WAN1 911 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 C2CD2LO14523 706 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 GSC2O15499 205 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 ENO1P06733 434 aaKnown RBP6.62□□□□□ -1.35
VPS13D-209ENST00000487188 EEF2P13639 858 aaKnown RBP6.62□□□□□ -1.35
VPS13D-209ENST00000487188 CTNNA2P26232 953 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 SERPINB6P35237 376 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 PSMC2P35998 433 aaKnown RBP6.62□□□□□ -1.35
VPS13D-209ENST00000487188 MARSP56192 900 aaKnown RBP6.62□□□□□ -1.35
VPS13D-209ENST00000487188 WDR4P57081 412 aaKnown RBP6.62□□□□□ -1.35
VPS13D-209ENST00000487188 EVX2Q03828 476 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 PDK4Q16654 411 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 C11orf63Q6NUN7 778 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 USP17L2Q6R6M4 530 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 ZNF564Q8TBZ8 553 aaPredicted RBP6.62□□□□□ -1.35
VPS13D-209ENST00000487188 C10orf82Q8WW14 230 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 DNAJC19Q96DA6 116 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 AGPAT1Q99943 283 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.62□□□□□ -1.352e-6■■■■■ 86.8
VPS13D-209ENST00000487188 ARL8BQ9NVJ2 186 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 NDUFA13Q9P0J0 144 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 PPARGC1AQ9UBK2 798 aaKnown RBP6.62□□□□□ -1.35
VPS13D-209ENST00000487188 SERPINA10Q9UK55 444 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 DNM3Q9UQ16 869 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 DUOX1Q9NRD9 1551 aa6.62□□□□□ -1.35
VPS13D-209ENST00000487188 SIPA1L3O60292 1781 aaPredicted RBP6.61□□□□□ -1.35
VPS13D-209ENST00000487188 COL18A1P39060 1754 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 I3L4J1 428 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 ZBED4O75132 1171 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 CCDC166P0CW27 439 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 ADARP55265 1226 aaKnown RBP6.61□□□□□ -1.35
VPS13D-209ENST00000487188 PPATQ06203 517 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 ASPHQ12797 758 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 MMEL1Q495T6 779 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 TMEM119Q4V9L6 283 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 TMEM259Q4ZIN3 620 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 OTOAQ7RTW8 1153 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 CCDC89Q8N998 374 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 WDR60Q8WVS4 1066 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 MTBPQ96DY7 904 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 PWWP2AQ96N64 755 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 RBM15Q96T37 977 aaKnown RBP eCLIP6.61□□□□□ -1.35
VPS13D-209ENST00000487188 TMEM47Q9BQJ4 181 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 THTPAQ9BU02 230 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 PHACTR1Q9C0D0 580 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 ANKRD2Q9GZV1 360 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 INTS2Q9H0H0 1204 aaKnown RBP6.61□□□□□ -1.35
VPS13D-209ENST00000487188 DDX18Q9NVP1 670 aaKnown RBP6.61□□□□□ -1.35
VPS13D-209ENST00000487188 TAS2R14Q9NYV8 317 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 SAP30BPQ9UHR5 308 aaKnown RBP6.61□□□□□ -1.35
VPS13D-209ENST00000487188 TCRBV7S2A1N4TA0A589 114 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 A6NJR5 290 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 AKAP3O75969 853 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 ANPEPP15144 967 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 RGS2P41220 211 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 MAGEA4P43358 317 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 CASP4P49662 377 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 IRX4P78413 519 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 LSAMPQ13449 338 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 GIT2Q14161 759 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 UBE2SQ16763 222 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 CERKLQ49MI3 558 aaPredicted RBP6.61□□□□□ -1.35
VPS13D-209ENST00000487188 PRUNE1Q86TP1 453 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 ANKLE1Q8NAG6 615 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 RDH13Q8NBN7 331 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 RAB3IL1Q8TBN0 382 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 MORC4Q8TE76 937 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 NRG4Q8WWG1 115 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 PRPF31Q8WWY3 499 aaKnown RBP6.61□□□□□ -1.35
VPS13D-209ENST00000487188 RILPQ96NA2 401 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 TTC25Q96NG3 672 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 NUP85Q9BW27 656 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 TSSK1BQ9BXA7 367 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 RANBP17Q9H2T7 1088 aaKnown RBP6.61□□□□□ -1.35
VPS13D-209ENST00000487188 LNPEPQ9UIQ6 1025 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 AJAP1Q9UKB5 411 aaPredicted RBP6.61□□□□□ -1.35
VPS13D-209ENST00000487188 ZMYM2Q9UBW7 1377 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 ATP8B3O60423 1300 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 FRMPD2Q68DX3 1309 aaPredicted RBP6.61□□□□□ -1.35
VPS13D-209ENST00000487188 SCN11AQ9UI33 1791 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 SMIM31A0A1B0GVY4 71 aa6.61□□□□□ -1.35
VPS13D-209ENST00000487188 MEIS1O00470 390 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms