RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	PDHB	P11177	359 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	ACADS	P16219	412 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	ZNF18	P17022	549 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	KRT9	P35527	623 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	PAFAH1B1	P43034	410 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	CTCF	P49711	727 aa	Predicted RBP	5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	CLCN2	P51788	898 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	KLC1	Q07866	573 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	MYO1E	Q12965	1108 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	MTX1	Q13505	466 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	STK38	Q15208	465 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	E2F5	Q15329	346 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	CLEC16A	Q2KHT3	1053 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	THEMIS2	Q5TEJ8	643 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	CREB3L3	Q68CJ9	461 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	IRGC	Q6NXR0	463 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	RNF111	Q6ZNA4	994 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	TOGARAM2	Q6ZUX3	1019 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	ZNF365	Q70YC5	407 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	FERMT3	Q86UX7	667 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	MYOCD	Q8IZQ8	938 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	IQCK	Q8N0W5	287 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	SLC35F6	Q8N357	371 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	PDILT	Q8N807	584 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	LINC00301	Q8NCQ3	95 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	CCDC197	Q8NCU1	140 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	SSH3	Q8TE77	659 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	ZNF526	Q8TF50	670 aa	Predicted RBP	5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	MAIP1	Q8WWC4	291 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	ATRIP	Q8WXE1	791 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	PIGB	Q92521	554 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	TBC1D5	Q92609	795 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	BRF1	Q92994	677 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	TEKT1	Q969V4	418 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	LRRC45	Q96CN5	670 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	HVCN1	Q96D96	273 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	NAF1	Q96HR8	494 aa	Known RBP	5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	NUP58	Q9BVL2	599 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	HDAC8	Q9BY41	377 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	YIPF3	Q9GZM5	350 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	UNC45A	Q9H3U1	944 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	RABEP2	Q9H5N1	569 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	RMI1	Q9H9A7	625 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	PCDH18	Q9HCL0	1135 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	IL1RAPL1	Q9NZN1	696 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	PDP2	Q9P2J9	529 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	BAIAP2L1	Q9UHR4	511 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	MRC1	P22897	1456 aa		5.12	□□□□□ -1.59
PTCD3-212	ENST00000477520	DOT1L	Q8TEK3	1739 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	BTBD19	C9JJ37	291 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520		E7EVH7	732 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	WDR46	O15213	610 aa	Known RBP	5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	SPTLC2	O15270	562 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	KCNQ2	O43526	872 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	USO1	O60763	962 aa	Known RBP	5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	MFAP3L	O75121	409 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	HIP1R	O75146	1068 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	ALDH1L1	O75891	902 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	LARGE1	O95461	756 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	VDR	P11473	427 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	ATP2A2	P16615	1042 aa	Known RBP	5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	ATP6V1C1	P21283	382 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	RPL13	P26373	211 aa	Known RBP	5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	CYLC1	P35663	651 aa	Predicted RBP	5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	SYK	P43405	635 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	TNNI2	P48788	182 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	ACADVL	P49748	655 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	YARS	P54577	528 aa	Known RBP	5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	SLURP1	P55000	103 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	EIF3B	P55884	814 aa	Known RBP	5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	PSMC1	P62191	440 aa	Known RBP	5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	ST3GAL1	Q11201	340 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	PDCL	Q13371	301 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	BYSL	Q13895	437 aa	Known RBP	5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	SPIDR	Q14159	915 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	KARS	Q15046	597 aa	Known RBP	5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	PPP1R7	Q15435	360 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	GSTA3	Q16772	222 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520		Q4G0T1	1027 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	TMEM201	Q5SNT2	666 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	GJC2	Q5T442	439 aa	Predicted RBP	5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	NT5DC1	Q5TFE4	455 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	HIBCH	Q6NVY1	386 aa	Predicted RBP	5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	ZNF790	Q6PG37	636 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	SND1	Q7KZF4	910 aa	Known RBP eCLIP	5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	CPLX4	Q7Z7G2	160 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	SLFN12	Q8IYM2	578 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	SMC1B	Q8NDV3	1235 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	ERMN	Q8TAM6	284 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	ZNF653	Q96CK0	615 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	ZNF274	Q96GC6	653 aa	Predicted RBP	5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	SEC16B	Q96JE7	1060 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	GPR20	Q99678	358 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	MEIS3	Q99687	375 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	SLF1	Q9BQI6	1058 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	ASPN	Q9BXN1	380 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	SIL1	Q9H173	461 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	NDST4	Q9H3R1	872 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	PLEKHA4	Q9H4M7	779 aa		5.11	□□□□□ -1.59
PTCD3-212	ENST00000477520	TAF1D	Q9H5J8	278 aa	Predicted RBP	5.11	□□□□□ -1.59

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