RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 TMEM196Q5HYL7 178 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 PDXDC1Q6P996 788 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 MFSD6Q6ZSS7 791 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 TOGARAM2Q6ZUX3 1019 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 RALGPS2Q86X27 583 aaPredicted RBP5.43□□□□□ -1.54
USP4-209ENST00000475873 KSR1Q8IVT5 923 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 SYNPOQ8N3V7 929 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 CAMKK1Q8N5S9 505 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 SMARCC2Q8TAQ2 1214 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 ZSCAN18Q8TBC5 510 aaPredicted RBP5.43□□□□□ -1.54
USP4-209ENST00000475873 PANK1Q8TE04 598 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 HASPINQ8TF76 798 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 SPIRE2Q8WWL2 714 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 NLRP7Q8WX94 980 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 ESR2Q92731 530 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 MSANTD3Q96H12 275 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 FAM227BQ96M60 508 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 FAM193BQ96PV7 902 aaPredicted RBP5.43□□□□□ -1.54
USP4-209ENST00000475873 FNBP1Q96RU3 617 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 MAP7D2Q96T17 732 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 MXRA8Q9BRK3 442 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 FDXACB1Q9BRP7 624 aaPredicted RBP5.43□□□□□ -1.54
USP4-209ENST00000475873 TPSD1Q9BZJ3 242 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 C8orf33Q9H7E9 229 aaPredicted RBP5.43□□□□□ -1.54
USP4-209ENST00000475873 MINDY3Q9H8M7 445 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 CAPN10Q9HC96 672 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 POLMQ9NP87 494 aaPredicted RBP5.43□□□□□ -1.54
USP4-209ENST00000475873 ZNF302Q9NR11 478 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 AGPAT5Q9NUQ2 364 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 HSPBP1Q9NZL4 362 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 ZSWIM5Q9P217 1185 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 ANKMY1Q9P2S6 941 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 EBF1Q9UH73 591 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 ADAM28Q9UKQ2 775 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 SLC8A2Q9UPR5 921 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 HES2Q9Y543 173 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 MAFBQ9Y5Q3 323 aaPredicted RBP5.43□□□□□ -1.54
USP4-209ENST00000475873 DNHD1Q96M86 4753 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 ZMYM6O95789 1325 aa5.43□□□□□ -1.54
USP4-209ENST00000475873 ARHGEF37A1IGU5 675 aa5.42□□□□□ -1.54
USP4-209ENST00000475873 TMEM150BA6NC51 233 aa5.42□□□□□ -1.54
USP4-209ENST00000475873 CHADO15335 359 aa5.42□□□□□ -1.54
USP4-209ENST00000475873 MAGEB2O15479 319 aa5.42□□□□□ -1.54
USP4-209ENST00000475873 MAFGO15525 162 aa5.42□□□□□ -1.54
USP4-209ENST00000475873 SLC28A2O43868 658 aa5.42□□□□□ -1.54
USP4-209ENST00000475873 RNF40O75150 1001 aa5.42□□□□□ -1.54
USP4-209ENST00000475873 KIF4AO95239 1232 aa5.42□□□□□ -1.54
USP4-209ENST00000475873 EGFP01133 1207 aa5.42□□□□□ -1.54
USP4-209ENST00000475873 HNRNPLP14866 589 aaKnown RBP eCLIP5.42□□□□□ -1.54
USP4-209ENST00000475873 POU3F2P20265 443 aaPredicted RBP5.42□□□□□ -1.54
USP4-209ENST00000475873 OR1D2P34982 312 aa5.42□□□□□ -1.54
USP4-209ENST00000475873 DHPSP49366 369 aaPredicted RBP5.42□□□□□ -1.54
USP4-209ENST00000475873 LMAN2Q12907 356 aa5.42□□□□□ -1.54
USP4-209ENST00000475873 KARSQ15046 597 aaKnown RBP5.42□□□□□ -1.54
USP4-209ENST00000475873 PSMD5Q16401 504 aa5.42□□□□□ -1.54
USP4-209ENST00000475873 UGCGQ16739 394 aa5.42□□□□□ -1.54
USP4-209ENST00000475873 STXBP5Q5T5C0 1151 aa5.42□□□□□ -1.54
USP4-209ENST00000475873 PEAR1Q5VY43 1037 aaPredicted RBP5.42□□□□□ -1.54
USP4-209ENST00000475873 HIST2H2BCQ6DN03 193 aa5.42□□□□□ -1.54
USP4-209ENST00000475873 SLC23A3Q6PIS1 610 aa5.42□□□□□ -1.54
USP4-209ENST00000475873 ARMCX6Q7L4S7 300 aa5.42□□□□□ -1.54
USP4-209ENST00000475873 MINDY1Q8N5J2 469 aa5.42□□□□□ -1.54
USP4-209ENST00000475873 PGBD1Q96JS3 809 aa5.42□□□□□ -1.54
USP4-209ENST00000475873 SCLT1Q96NL6 688 aa5.42□□□□□ -1.54
USP4-209ENST00000475873 CORO1BQ9BR76 489 aa5.42□□□□□ -1.54
USP4-209ENST00000475873 SDF4Q9BRK5 362 aa5.42□□□□□ -1.54
USP4-209ENST00000475873 EIF2AQ9BY44 585 aaKnown RBP5.42□□□□□ -1.54
USP4-209ENST00000475873 CXCL16Q9H2A7 254 aa5.42□□□□□ -1.54
USP4-209ENST00000475873 IFT122Q9HBG6 1241 aa5.42□□□□□ -1.54
USP4-209ENST00000475873 KANSL3Q9P2N6 904 aa5.42□□□□□ -1.54
USP4-209ENST00000475873 LRBAP50851 2863 aa5.42□□□□□ -1.54
USP4-209ENST00000475873 CNTNAP2Q9UHC6 1331 aa5.42□□□□□ -1.54
USP4-209ENST00000475873 PLXND1Q9Y4D7 1925 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 TEX51A0A1B0GUA7 166 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 CAPN9O14815 690 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 SEC24AO95486 1093 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 APBB3O95704 486 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 PCP11498 1178 aaKnown RBP5.41□□□□□ -1.54
USP4-209ENST00000475873 SKIP12755 728 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 GP1BBP13224 206 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 ITPKAP23677 461 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 U2AF2P26368 475 aaKnown RBP eCLIP5.41□□□□□ -1.54
USP4-209ENST00000475873 RDXP35241 583 aaKnown RBP5.41□□□□□ -1.54
USP4-209ENST00000475873 CREMQ03060 361 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 DMC1Q14565 340 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 TEAD2Q15562 447 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 TARBP2Q15633 366 aaKnown RBP5.41□□□□□ -1.54
USP4-209ENST00000475873 FAM171A1Q5VUB5 890 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 FAM160B1Q5W0V3 765 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 GPR155Q7Z3F1 870 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 GLRX5Q86SX6 157 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 RASSF3Q86WH2 238 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 IQCA1Q86XH1 822 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 SYT12Q8IV01 421 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 FTSJ3Q8IY81 847 aaKnown RBP5.41□□□□□ -1.54
USP4-209ENST00000475873 CKAP2LQ8IYA6 745 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 OLIG1Q8TAK6 271 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 SHKBP1Q8TBC3 707 aa5.41□□□□□ -1.54
USP4-209ENST00000475873 CSGALNACT1Q8TDX6 532 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms