RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 FAM189A1O60320 539 aa15.44■□□□□ 0.06
UPF3A-204ENST00000475218 B3GAT3O94766 335 aa15.44■□□□□ 0.06
UPF3A-204ENST00000475218 BMP15O95972 392 aa15.44■□□□□ 0.06
UPF3A-204ENST00000475218 HARSP12081 509 aaKnown RBP15.44■□□□□ 0.06
UPF3A-204ENST00000475218 BRCC3P46736 316 aa15.44■□□□□ 0.06
UPF3A-204ENST00000475218 MCL1Q07820 350 aa15.44■□□□□ 0.06
UPF3A-204ENST00000475218 PSMD5Q16401 504 aa15.44■□□□□ 0.06
UPF3A-204ENST00000475218 DCLRE1AQ6PJP8 1040 aa15.44■□□□□ 0.06
UPF3A-204ENST00000475218 ZPBP2Q6X784 338 aa15.44■□□□□ 0.06
UPF3A-204ENST00000475218 CCDC149Q6ZUS6 474 aa15.44■□□□□ 0.06
UPF3A-204ENST00000475218 RAD54LQ92698 747 aa15.44■□□□□ 0.06
UPF3A-204ENST00000475218 FAM122AQ96E09 287 aa15.44■□□□□ 0.06
UPF3A-204ENST00000475218 CCSER1Q9C0I3 900 aa15.44■□□□□ 0.06
UPF3A-204ENST00000475218 PLEKHA4Q9H4M7 779 aa15.44■□□□□ 0.06
UPF3A-204ENST00000475218 WDR6Q9NNW5 1121 aaKnown RBP15.44■□□□□ 0.06
UPF3A-204ENST00000475218 FBXW11Q9UKB1 542 aa15.44■□□□□ 0.06
UPF3A-204ENST00000475218 ODF2LQ9ULJ1 636 aa15.44■□□□□ 0.06
UPF3A-204ENST00000475218 TKTP29401 623 aaKnown RBP15.44■□□□□ 0.06
UPF3A-204ENST00000475218 MARCKSP29966 332 aaPredicted RBP15.44■□□□□ 0.06
UPF3A-204ENST00000475218 VCPP55072 806 aaKnown RBP15.44■□□□□ 0.06
UPF3A-204ENST00000475218 DHX8Q14562 1220 aaKnown RBP15.44■□□□□ 0.06
UPF3A-204ENST00000475218 NOLC1Q14978 699 aaKnown RBP eCLIP15.44■□□□□ 0.06
UPF3A-204ENST00000475218 ZBTB41Q5SVQ8 909 aa15.44■□□□□ 0.06
UPF3A-204ENST00000475218 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.44■□□□□ 0.06
UPF3A-204ENST00000475218 HAUS6Q7Z4H7 955 aa15.44■□□□□ 0.06
UPF3A-204ENST00000475218 SMG7Q92540 1137 aaKnown RBP15.44■□□□□ 0.06
UPF3A-204ENST00000475218 DDX27Q96GQ7 796 aaKnown RBP15.44■□□□□ 0.06
UPF3A-204ENST00000475218 INTS4Q96HW7 963 aaKnown RBP15.44■□□□□ 0.06
UPF3A-204ENST00000475218 ACAP3Q96P50 834 aa15.44■□□□□ 0.06
UPF3A-204ENST00000475218 MYADMQ96S97 322 aa15.44■□□□□ 0.06
UPF3A-204ENST00000475218 FOXD4L1Q9NU39 408 aa15.44■□□□□ 0.06
UPF3A-204ENST00000475218 ZDHHC7Q9NXF8 308 aa15.44■□□□□ 0.06
UPF3A-204ENST00000475218 ANKFY1Q9P2R3 1169 aa15.44■□□□□ 0.06
UPF3A-204ENST00000475218 MTRRQ9UBK8 725 aa15.44■□□□□ 0.06
UPF3A-204ENST00000475218 CLUHO75153 1309 aa15.43■□□□□ 0.06
UPF3A-204ENST00000475218 NOTCH4Q99466 2003 aa15.43■□□□□ 0.06
UPF3A-204ENST00000475218 SPDYE4A6NLX3 237 aa15.43■□□□□ 0.06
UPF3A-204ENST00000475218 ZMYND10O75800 440 aa15.43■□□□□ 0.06
UPF3A-204ENST00000475218 MTMR3Q13615 1198 aa15.43■□□□□ 0.06
UPF3A-204ENST00000475218 SLC39A4Q6P5W5 647 aa15.43■□□□□ 0.06
UPF3A-204ENST00000475218 CYP26C1Q6V0L0 522 aa15.43■□□□□ 0.06
UPF3A-204ENST00000475218 APBB1IPQ7Z5R6 666 aaPredicted RBP15.43■□□□□ 0.06
UPF3A-204ENST00000475218 PLCD3Q8N3E9 789 aa15.43■□□□□ 0.06
UPF3A-204ENST00000475218 FBXL6Q8N531 539 aa15.43■□□□□ 0.06
UPF3A-204ENST00000475218 CALML4Q96GE6 196 aa15.43■□□□□ 0.06
UPF3A-204ENST00000475218 MFSD14AQ96MC6 490 aa15.43■□□□□ 0.06
UPF3A-204ENST00000475218 UROC1Q96N76 676 aa15.43■□□□□ 0.06
UPF3A-204ENST00000475218 CLIC6Q96NY7 704 aa15.43■□□□□ 0.06
UPF3A-204ENST00000475218 TCHPQ9BT92 498 aa15.43■□□□□ 0.06
UPF3A-204ENST00000475218 PRKD2Q9BZL6 878 aa15.43■□□□□ 0.06
UPF3A-204ENST00000475218 TOPORSQ9NS56 1045 aaPredicted RBP15.43■□□□□ 0.06
UPF3A-204ENST00000475218 PDCP20941 246 aa15.42■□□□□ 0.06
UPF3A-204ENST00000475218 TNFSF9P41273 254 aa15.42■□□□□ 0.06
UPF3A-204ENST00000475218 SMTNP53814 917 aa15.42■□□□□ 0.06
UPF3A-204ENST00000475218 YARSP54577 528 aaKnown RBP15.42■□□□□ 0.06
UPF3A-204ENST00000475218 CREMQ03060 361 aa15.42■□□□□ 0.06
UPF3A-204ENST00000475218 ELAVL2Q12926 359 aaKnown RBP15.42■□□□□ 0.06
UPF3A-204ENST00000475218 STRN3Q13033 797 aa15.42■□□□□ 0.06
UPF3A-204ENST00000475218 OTOP3Q7RTS5 596 aa15.42■□□□□ 0.06
UPF3A-204ENST00000475218 PRSS33Q8NF86 280 aa15.42■□□□□ 0.06
UPF3A-204ENST00000475218 LARSQ9P2J5 1176 aaKnown RBP15.42■□□□□ 0.06
UPF3A-204ENST00000475218 TUBGCP4Q9UGJ1 667 aa15.42■□□□□ 0.06
UPF3A-204ENST00000475218 A0A087X0B3 334 aa15.41■□□□□ 0.06
UPF3A-204ENST00000475218 K7ELQ4 463 aaPredicted RBP15.41■□□□□ 0.06
UPF3A-204ENST00000475218 PODXLO00592 558 aa15.41■□□□□ 0.06
UPF3A-204ENST00000475218 TBC1D4O60343 1298 aa15.41■□□□□ 0.06
UPF3A-204ENST00000475218 PIGRP01833 764 aa15.41■□□□□ 0.06
UPF3A-204ENST00000475218 CXCL8P10145 99 aa15.41■□□□□ 0.06
UPF3A-204ENST00000475218 RAB33AQ14088 237 aa15.41■□□□□ 0.06
UPF3A-204ENST00000475218 ZBTB6Q15916 424 aa15.41■□□□□ 0.06
UPF3A-204ENST00000475218 UBALD2Q8IYN6 164 aa15.41■□□□□ 0.06
UPF3A-204ENST00000475218 USP28Q96RU2 1077 aa15.41■□□□□ 0.06
UPF3A-204ENST00000475218 IKZF4Q9H2S9 585 aa15.41■□□□□ 0.06
UPF3A-204ENST00000475218 DPP7Q9UHL4 492 aa15.41■□□□□ 0.06
UPF3A-204ENST00000475218 TBX20Q9UMR3 447 aa15.41■□□□□ 0.06
UPF3A-204ENST00000475218 SRPRBQ9Y5M8 271 aaKnown RBP15.41■□□□□ 0.06
UPF3A-204ENST00000475218 MYH15Q9Y2K3 1946 aa15.41■□□□□ 0.06
UPF3A-204ENST00000475218 VPS13AQ96RL7 3174 aa15.41■□□□□ 0.06
UPF3A-204ENST00000475218 TTC26A0AVF1 554 aa15.41■□□□□ 0.06
UPF3A-204ENST00000475218 NMT1P30419 496 aaKnown RBP15.41■□□□□ 0.06
UPF3A-204ENST00000475218 HOXD11P31277 338 aaPredicted RBP15.41■□□□□ 0.06
UPF3A-204ENST00000475218 OR1D2P34982 312 aa15.41■□□□□ 0.06
UPF3A-204ENST00000475218 DDIT3P35638 169 aa15.41■□□□□ 0.06
UPF3A-204ENST00000475218 NTHL1P78549 312 aa15.41■□□□□ 0.06
UPF3A-204ENST00000475218 CEBPZQ03701 1054 aaKnown RBP15.41■□□□□ 0.06
UPF3A-204ENST00000475218 SPAG1Q07617 926 aa15.41■□□□□ 0.06
UPF3A-204ENST00000475218 RSAD2Q8WXG1 361 aa15.41■□□□□ 0.06
UPF3A-204ENST00000475218 LARP4BQ92615 738 aaKnown RBP15.41■□□□□ 0.06
UPF3A-204ENST00000475218 KCNK12Q9HB15 430 aa15.41■□□□□ 0.06
UPF3A-204ENST00000475218 PARVGQ9HBI0 331 aa15.41■□□□□ 0.06
UPF3A-204ENST00000475218 SLC38A7Q9NVC3 462 aa15.41■□□□□ 0.06
UPF3A-204ENST00000475218 KCNG1Q9UIX4 513 aa15.41■□□□□ 0.06
UPF3A-204ENST00000475218 BACE2Q9Y5Z0 518 aa15.41■□□□□ 0.06
UPF3A-204ENST00000475218 CDY1Q9Y6F8 540 aa15.41■□□□□ 0.06
UPF3A-204ENST00000475218 ANK1P16157 1881 aa15.4■□□□□ 0.06
UPF3A-204ENST00000475218 TISP43B9A030 160 aa15.4■□□□□ 0.06
UPF3A-204ENST00000475218 CLDN3O15551 220 aa15.4■□□□□ 0.06
UPF3A-204ENST00000475218 C8AP07357 584 aa15.4■□□□□ 0.06
UPF3A-204ENST00000475218 MRPL58Q14197 206 aaKnown RBP15.4■□□□□ 0.06
UPF3A-204ENST00000475218 MYCT1Q8N699 235 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms