RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 RIPPLY1Q0D2K3 151 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 SNX17Q15036 470 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 CCDC80Q76M96 950 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 MMGT1Q8N4V1 131 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 MSTO1Q9BUK6 570 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 ITM2BQ9Y287 266 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 ARSEP51690 589 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 FASTKD1Q53R41 847 aaKnown RBP13.97□□□□□ -0.17
COL6A3-209ENST00000472056 LRRC8DQ7L1W4 858 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 KCNV2Q8TDN2 545 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 AIPL1Q9NZN9 384 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 TAF2Q6P1X5 1199 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 TEKT4Q8WW24 435 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 RMND5BQ96G75 393 aaPredicted RBP13.97□□□□□ -0.17
COL6A3-209ENST00000472056 PLEKHA8Q96JA3 519 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 ZSCAN9O15535 394 aaPredicted RBP13.97□□□□□ -0.17
COL6A3-209ENST00000472056 CYP4A11Q02928 519 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 MTFR1Q15390 333 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 HSPH1Q92598 858 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 GMEB1Q9Y692 573 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 SETBP1Q9Y6X0 1596 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 FRMPD2Q68DX3 1309 aaPredicted RBP13.97□□□□□ -0.17
COL6A3-209ENST00000472056 ABCB1P08183 1280 aaPredicted RBP13.97□□□□□ -0.17
COL6A3-209ENST00000472056 TCF3P15923 654 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 KRT17Q04695 432 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 LINC00523Q86TU6 105 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 ANO3Q9BYT9 981 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 POTEFA5A3E0 1075 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 AREL1O15033 823 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 POTEIP0CG38 1075 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 FDX1P10109 184 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 KITP10721 976 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 HMOX2P30519 316 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 POTEEQ6S8J3 1075 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 THTPAQ9BU02 230 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 SLC40A1Q9NP59 571 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 EVPLLA8MZ36 301 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 CLDN3O15551 220 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 ITGA1P56199 1179 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 SPDYCQ5MJ68 293 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 CARD9Q9H257 536 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 H2AFY2Q9P0M6 372 aaPredicted RBP13.97□□□□□ -0.17
COL6A3-209ENST00000472056 CTNNAL1Q9UBT7 734 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 GGA2Q9UJY4 613 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 SF3B1O75533 1304 aaKnown RBP eCLIP13.96□□□□□ -0.17
COL6A3-209ENST00000472056 RIMBP2O15034 1052 aa13.96□□□□□ -0.17
COL6A3-209ENST00000472056 ATP1A3P13637 1013 aa13.96□□□□□ -0.17
COL6A3-209ENST00000472056 ZNF18P17022 549 aa13.96□□□□□ -0.17
COL6A3-209ENST00000472056 SPRP35270 261 aaPredicted RBP13.96□□□□□ -0.17
COL6A3-209ENST00000472056 KDSRQ06136 332 aa13.96□□□□□ -0.17
COL6A3-209ENST00000472056 RC3H1Q5TC82 1133 aaKnown RBP13.96□□□□□ -0.17
COL6A3-209ENST00000472056 FBXW10Q5XX13 1052 aa13.96□□□□□ -0.17
COL6A3-209ENST00000472056 KRT73Q86Y46 540 aa13.96□□□□□ -0.17
COL6A3-209ENST00000472056 WHRNQ9P202 907 aa13.96□□□□□ -0.17
COL6A3-209ENST00000472056 ZNF804BA4D1E1 1349 aa13.96□□□□□ -0.17
COL6A3-209ENST00000472056 ASNA1O43681 348 aa13.96□□□□□ -0.17
COL6A3-209ENST00000472056 ARIH2O95376 493 aa13.96□□□□□ -0.17
COL6A3-209ENST00000472056 ENO1P06733 434 aaKnown RBP13.96□□□□□ -0.17
COL6A3-209ENST00000472056 IMPDH2P12268 514 aa13.96□□□□□ -0.17
COL6A3-209ENST00000472056 HNRNPH1P31943 449 aaKnown RBP13.96□□□□□ -0.17
COL6A3-209ENST00000472056 MICU2Q8IYU8 434 aa13.96□□□□□ -0.17
COL6A3-209ENST00000472056 ERP27Q96DN0 273 aa13.96□□□□□ -0.17
COL6A3-209ENST00000472056 RXFP1Q9HBX9 757 aa13.96□□□□□ -0.17
COL6A3-209ENST00000472056 ABL1P00519 1130 aa13.96□□□□□ -0.17
COL6A3-209ENST00000472056 PDIA5Q14554 519 aa13.96□□□□□ -0.17
COL6A3-209ENST00000472056 ARMC3Q5W041 872 aa13.96□□□□□ -0.17
COL6A3-209ENST00000472056 HMG20AQ9NP66 347 aa13.96□□□□□ -0.17
COL6A3-209ENST00000472056 COPG2Q9UBF2 871 aa13.96□□□□□ -0.17
COL6A3-209ENST00000472056 PDZK1P1A8MUH7 402 aa13.96□□□□□ -0.17
COL6A3-209ENST00000472056 USP11P51784 963 aa13.96□□□□□ -0.17
COL6A3-209ENST00000472056 CCNYL1Q8N7R7 359 aa13.96□□□□□ -0.17
COL6A3-209ENST00000472056 RGL1Q9NZL6 768 aa13.96□□□□□ -0.17
COL6A3-209ENST00000472056 AP3M1Q9Y2T2 418 aa13.96□□□□□ -0.17
COL6A3-209ENST00000472056 ALAS1P13196 640 aa13.96□□□□□ -0.18
COL6A3-209ENST00000472056 TSPY1Q01534 308 aa13.96□□□□□ -0.18
COL6A3-209ENST00000472056 GFPT1Q06210 699 aaPredicted RBP13.96□□□□□ -0.18
COL6A3-209ENST00000472056 ARHGAP22Q7Z5H3 698 aa13.96□□□□□ -0.18
COL6A3-209ENST00000472056 RBBP8NLQ8NC74 664 aaPredicted RBP13.96□□□□□ -0.18
COL6A3-209ENST00000472056 RBM15Q96T37 977 aaKnown RBP eCLIP13.96□□□□□ -0.18
COL6A3-209ENST00000472056 SRRM3A6NNA2 597 aaPredicted RBP13.96□□□□□ -0.18
COL6A3-209ENST00000472056 ABLIM1O14639 778 aa13.96□□□□□ -0.18
COL6A3-209ENST00000472056 SNRPAP09012 282 aaKnown RBP13.96□□□□□ -0.18
COL6A3-209ENST00000472056 GNA15P30679 374 aa13.96□□□□□ -0.18
COL6A3-209ENST00000472056 PFKFB3Q16875 520 aaPredicted RBP13.96□□□□□ -0.18
COL6A3-209ENST00000472056 RTL3Q8N8U3 475 aaKnown RBP13.96□□□□□ -0.18
COL6A3-209ENST00000472056 SEPT1Q8WYJ6 367 aa13.96□□□□□ -0.18
COL6A3-209ENST00000472056 CNDP1Q96KN2 507 aa13.96□□□□□ -0.18
COL6A3-209ENST00000472056 C8orf4Q9NR00 106 aa13.96□□□□□ -0.18
COL6A3-209ENST00000472056 ZNF521Q96K83 1311 aa13.96□□□□□ -0.18
COL6A3-209ENST00000472056 HECW2Q9P2P5 1572 aa13.96□□□□□ -0.18
COL6A3-209ENST00000472056 BMP3P12645 472 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 NCAPHQ15003 741 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 TRIP13Q15645 432 aaPredicted RBP13.95□□□□□ -0.18
COL6A3-209ENST00000472056 CCDC142Q17RM4 750 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 SGSM1Q2NKQ1 1148 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 EDRF1Q3B7T1 1238 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 LARGE2Q8N3Y3 721 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 C1orf50Q9BV19 199 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 STARD13Q9Y3M8 1113 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 PDXKO00764 312 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms