RNA–Protein interactions for RNA: ENST00000469778.1

SPTLC1-204, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 2

Gene SPTLC1, Length 490 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-204ENST00000469778 ZC3H3Q8IXZ2 948 aaKnown RBP13.7□□□□□ -0.22
SPTLC1-204ENST00000469778 COLGALT2Q8IYK4 626 aa13.7□□□□□ -0.22
SPTLC1-204ENST00000469778 BEST2Q8NFU1 509 aa13.7□□□□□ -0.22
SPTLC1-204ENST00000469778 TMC2Q8TDI7 906 aa13.7□□□□□ -0.22
SPTLC1-204ENST00000469778 NOC3LQ8WTT2 800 aaKnown RBP13.7□□□□□ -0.22
SPTLC1-204ENST00000469778 NELFBQ8WX92 580 aa13.7□□□□□ -0.22
SPTLC1-204ENST00000469778 SAAL1Q96ER3 474 aa13.7□□□□□ -0.22
SPTLC1-204ENST00000469778 FNBP1Q96RU3 617 aa13.7□□□□□ -0.22
SPTLC1-204ENST00000469778 LMAN2LQ9H0V9 348 aa13.7□□□□□ -0.22
SPTLC1-204ENST00000469778 IKZF4Q9H2S9 585 aa13.7□□□□□ -0.22
SPTLC1-204ENST00000469778 NKX2-4Q9H2Z4 354 aa13.7□□□□□ -0.22
SPTLC1-204ENST00000469778 NRDE2Q9H7Z3 1164 aa13.7□□□□□ -0.22
SPTLC1-204ENST00000469778 METTL14Q9HCE5 456 aaKnown RBP13.7□□□□□ -0.22
SPTLC1-204ENST00000469778 MIOSQ9NXC5 875 aa13.7□□□□□ -0.22
SPTLC1-204ENST00000469778 TMEM63CQ9P1W3 806 aa13.7□□□□□ -0.22
SPTLC1-204ENST00000469778 LZTS1Q9Y250 596 aa13.7□□□□□ -0.22
SPTLC1-204ENST00000469778 FAN1Q9Y2M0 1017 aa13.7□□□□□ -0.22
SPTLC1-204ENST00000469778 H3BNC9 293 aa13.69□□□□□ -0.22
SPTLC1-204ENST00000469778 TMEM189-UBE2V1I3L0A0 370 aa13.69□□□□□ -0.22
SPTLC1-204ENST00000469778 SLC16A3O15427 465 aaKnown RBP13.69□□□□□ -0.22
SPTLC1-204ENST00000469778 TRAPPC3O43617 180 aa13.69□□□□□ -0.22
SPTLC1-204ENST00000469778 STX10O60499 249 aa13.69□□□□□ -0.22
SPTLC1-204ENST00000469778 GALTP07902 379 aa13.69□□□□□ -0.22
SPTLC1-204ENST00000469778 LINC00271P0C7V0 271 aa13.69□□□□□ -0.22
SPTLC1-204ENST00000469778 CCDC192P0DO97 292 aa13.69□□□□□ -0.22
SPTLC1-204ENST00000469778 KRT13P13646 458 aa13.69□□□□□ -0.22
SPTLC1-204ENST00000469778 LRPAP1P30533 357 aa13.69□□□□□ -0.22
SPTLC1-204ENST00000469778 CYP24A1Q07973 514 aa13.69□□□□□ -0.22
SPTLC1-204ENST00000469778 ELAVL2Q12926 359 aaKnown RBP13.69□□□□□ -0.22
SPTLC1-204ENST00000469778 TMEM132DQ14C87 1099 aa13.69□□□□□ -0.22
SPTLC1-204ENST00000469778 NAB2Q15742 525 aa13.69□□□□□ -0.22
SPTLC1-204ENST00000469778 STX1AQ16623 288 aa13.69□□□□□ -0.22
SPTLC1-204ENST00000469778 SEZ6Q53EL9 994 aa13.69□□□□□ -0.22
SPTLC1-204ENST00000469778 ZBTB41Q5SVQ8 909 aa13.69□□□□□ -0.22
SPTLC1-204ENST00000469778 SPATA1Q5VX52 437 aa13.69□□□□□ -0.22
SPTLC1-204ENST00000469778 TTI2Q6NXR4 508 aa13.69□□□□□ -0.22
SPTLC1-204ENST00000469778 ZNF280BQ86YH2 543 aa13.69□□□□□ -0.22
SPTLC1-204ENST00000469778 CBWD2Q8IUF1 395 aa13.69□□□□□ -0.22
SPTLC1-204ENST00000469778 WDR49Q8IV35 697 aa13.69□□□□□ -0.22
SPTLC1-204ENST00000469778 GPR65Q8IYL9 337 aa13.69□□□□□ -0.22
SPTLC1-204ENST00000469778 COLGALT1Q8NBJ5 622 aa13.69□□□□□ -0.22
SPTLC1-204ENST00000469778 LMCD1Q9NZU5 365 aa13.69□□□□□ -0.22
SPTLC1-204ENST00000469778 ARHGEF37A1IGU5 675 aa13.68□□□□□ -0.22
SPTLC1-204ENST00000469778 GOLGA8IPA6NC78 632 aa13.68□□□□□ -0.22
SPTLC1-204ENST00000469778 GOLGA8JA6NMD2 632 aa13.68□□□□□ -0.22
SPTLC1-204ENST00000469778 ZC3H11AO75152 810 aaKnown RBP eCLIP13.68□□□□□ -0.22
SPTLC1-204ENST00000469778 DDHD2O94830 711 aa13.68□□□□□ -0.22
SPTLC1-204ENST00000469778 EPB41P11171 864 aaKnown RBP13.68□□□□□ -0.22
SPTLC1-204ENST00000469778 CD44P16070 742 aaKnown RBP13.68□□□□□ -0.22
SPTLC1-204ENST00000469778 GTF2H1P32780 548 aa13.68□□□□□ -0.22
SPTLC1-204ENST00000469778 CTNNB1P35222 781 aa13.68□□□□□ -0.22
SPTLC1-204ENST00000469778 AFF1P51825 1210 aaKnown RBP13.68□□□□□ -0.22
SPTLC1-204ENST00000469778 CEP135Q66GS9 1140 aa13.68□□□□□ -0.22
SPTLC1-204ENST00000469778 KLHL10Q6JEL2 608 aa13.68□□□□□ -0.22
SPTLC1-204ENST00000469778 FRMD5Q7Z6J6 570 aa13.68□□□□□ -0.22
SPTLC1-204ENST00000469778 SLC39A11Q8N1S5 342 aa13.68□□□□□ -0.22
SPTLC1-204ENST00000469778 CSGALNACT2Q8N6G5 542 aa13.68□□□□□ -0.22
SPTLC1-204ENST00000469778 FBXO22Q8NEZ5 403 aa13.68□□□□□ -0.22
SPTLC1-204ENST00000469778 FAM212AQ96EL1 285 aa13.68□□□□□ -0.22
SPTLC1-204ENST00000469778 KIF12Q96FN5 646 aa13.68□□□□□ -0.22
SPTLC1-204ENST00000469778 TMEM169Q96HH4 297 aa13.68□□□□□ -0.22
SPTLC1-204ENST00000469778 ZMAT2Q96NC0 199 aaKnown RBP13.68□□□□□ -0.22
SPTLC1-204ENST00000469778 SSX2IPQ9Y2D8 614 aa13.68□□□□□ -0.22
SPTLC1-204ENST00000469778 R3HCC1Q9Y3T6 440 aaKnown RBP13.68□□□□□ -0.22
SPTLC1-204ENST00000469778 NRP1O14786 923 aa13.67□□□□□ -0.22
SPTLC1-204ENST00000469778 MEFVO15553 781 aaPredicted RBP13.67□□□□□ -0.22
SPTLC1-204ENST00000469778 POU3F3P20264 500 aaPredicted RBP13.67□□□□□ -0.22
SPTLC1-204ENST00000469778 PNPLA4P41247 253 aa13.67□□□□□ -0.22
SPTLC1-204ENST00000469778 PTPROQ16827 1216 aa13.67□□□□□ -0.22
SPTLC1-204ENST00000469778 UPP1Q16831 310 aa13.67□□□□□ -0.22
SPTLC1-204ENST00000469778 DPCR1Q3MIW9 517 aa13.67□□□□□ -0.22
SPTLC1-204ENST00000469778 DDX53Q86TM3 631 aaKnown RBP13.67□□□□□ -0.22
SPTLC1-204ENST00000469778 FAM114A1Q8IWE2 563 aa13.67□□□□□ -0.22
SPTLC1-204ENST00000469778 FAM186BQ8IYM0 893 aa13.67□□□□□ -0.22
SPTLC1-204ENST00000469778 RDH13Q8NBN7 331 aa13.67□□□□□ -0.22
SPTLC1-204ENST00000469778 PARD3BQ8TEW8 1205 aa13.67□□□□□ -0.22
SPTLC1-204ENST00000469778 IGSF21Q96ID5 467 aa13.67□□□□□ -0.22
SPTLC1-204ENST00000469778 ANKRD36BP1Q96IX9 119 aa13.67□□□□□ -0.22
SPTLC1-204ENST00000469778 PDE11AQ9HCR9 933 aa13.67□□□□□ -0.22
SPTLC1-204ENST00000469778 INTS13Q9NVM9 706 aa13.67□□□□□ -0.22
SPTLC1-204ENST00000469778 ARMCX3Q9UH62 379 aaPredicted RBP13.67□□□□□ -0.22
SPTLC1-204ENST00000469778 ITGA11Q9UKX5 1188 aa13.67□□□□□ -0.22
SPTLC1-204ENST00000469778 PLAGL2Q9UPG8 496 aa13.67□□□□□ -0.22
SPTLC1-204ENST00000469778 FNDC1Q4ZHG4 1894 aaPredicted RBP13.67□□□□□ -0.22
SPTLC1-204ENST00000469778 PTPRSQ13332 1948 aa13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 SOX1O00570 391 aaPredicted RBP13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 TADA2AO75478 443 aa13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 AKAP3O75969 853 aa13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 FGF18O76093 207 aa13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 B3GAT3O94766 335 aa13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 TNNC2P02585 160 aa13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 TNNI1P19237 187 aa13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 OR1G1P47890 313 aa13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 SLC11A1P49279 550 aa13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 VAMP7P51809 220 aa13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 MARSP56192 900 aaKnown RBP13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 RBP5P82980 135 aa13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 TFAMQ00059 246 aaKnown RBP13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 GPM6BQ13491 265 aa13.66□□□□□ -0.22
SPTLC1-204ENST00000469778 GLRA4Q5JXX5 417 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms