RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 C1orf112Q9NSG2 853 aa20.43■□□□□ 0.86
VIM-203ENST00000469543 MROH7Q68CQ1 1323 aa20.43■□□□□ 0.86
VIM-203ENST00000469543 PARP14Q460N5 1801 aa20.43■□□□□ 0.86
VIM-203ENST00000469543 K7ERI5 159 aa20.43■□□□□ 0.86
VIM-203ENST00000469543 MAPK4P31152 587 aa20.43■□□□□ 0.86
VIM-203ENST00000469543 PMS2P54278 862 aa20.43■□□□□ 0.86
VIM-203ENST00000469543 TMEM270Q6UE05 265 aa20.43■□□□□ 0.86
VIM-203ENST00000469543 C15orf39Q6ZRI6 1047 aa20.43■□□□□ 0.86
VIM-203ENST00000469543 PRUNE1Q86TP1 453 aa20.43■□□□□ 0.86
VIM-203ENST00000469543 SLC16A10Q8TF71 515 aa20.43■□□□□ 0.86
VIM-203ENST00000469543 PSPC1Q8WXF1 523 aaKnown RBP20.43■□□□□ 0.86
VIM-203ENST00000469543 PWWP2AQ96N64 755 aa20.43■□□□□ 0.86
VIM-203ENST00000469543 ZNF302Q9NR11 478 aa20.43■□□□□ 0.86
VIM-203ENST00000469543 SLC12A6Q9UHW9 1150 aa20.43■□□□□ 0.86
VIM-203ENST00000469543 PNMA2Q9UL42 364 aa20.43■□□□□ 0.86
VIM-203ENST00000469543 MYPNQ86TC9 1320 aa20.43■□□□□ 0.86
VIM-203ENST00000469543 C4BPAP04003 597 aaKnown RBP20.42■□□□□ 0.86
VIM-203ENST00000469543 COILP38432 576 aaPredicted RBP20.42■□□□□ 0.86
VIM-203ENST00000469543 LIG3P49916 1009 aa20.42■□□□□ 0.86
VIM-203ENST00000469543 XKR3Q5GH77 459 aa20.42■□□□□ 0.86
VIM-203ENST00000469543 MIS18BP1Q6P0N0 1132 aa20.42■□□□□ 0.86
VIM-203ENST00000469543 MCOLN2Q8IZK6 566 aa20.42■□□□□ 0.86
VIM-203ENST00000469543 RDM1Q8NG50 284 aa20.42■□□□□ 0.86
VIM-203ENST00000469543 C17orf75Q9HAS0 396 aa20.42■□□□□ 0.86
VIM-203ENST00000469543 FOXO6A8MYZ6 492 aa20.42■□□□□ 0.86
VIM-203ENST00000469543 CHRNA3P32297 505 aa20.42■□□□□ 0.86
VIM-203ENST00000469543 TNFSF9P41273 254 aa20.42■□□□□ 0.86
VIM-203ENST00000469543 PIK3CAP42336 1068 aa20.42■□□□□ 0.86
VIM-203ENST00000469543 RWDD2BP57060 319 aa20.42■□□□□ 0.86
VIM-203ENST00000469543 PDE4CQ08493 712 aa20.42■□□□□ 0.86
VIM-203ENST00000469543 SLC17A8Q8NDX2 589 aa20.42■□□□□ 0.86
VIM-203ENST00000469543 C11orf70Q9BRQ4 267 aa20.42■□□□□ 0.86
VIM-203ENST00000469543 AFG3L2Q9Y4W6 797 aa20.42■□□□□ 0.86
VIM-203ENST00000469543 EXTL3O43909 919 aa20.41■□□□□ 0.86
VIM-203ENST00000469543 MTA2O94776 668 aa20.41■□□□□ 0.86
VIM-203ENST00000469543 CST3P01034 146 aaPredicted RBP20.41■□□□□ 0.86
VIM-203ENST00000469543 GARTP22102 1010 aa20.41■□□□□ 0.86
VIM-203ENST00000469543 MARK3P27448 753 aa20.41■□□□□ 0.86
VIM-203ENST00000469543 GJC1P36383 396 aa20.41■□□□□ 0.86
VIM-203ENST00000469543 VPS41P49754 854 aa20.41■□□□□ 0.86
VIM-203ENST00000469543 IFI35P80217 286 aaPredicted RBP20.41■□□□□ 0.86
VIM-203ENST00000469543 DHX34Q14147 1143 aaKnown RBP20.41■□□□□ 0.86
VIM-203ENST00000469543 TCEAL1Q15170 157 aa20.41■□□□□ 0.86
VIM-203ENST00000469543 GNPTABQ3T906 1256 aa20.41■□□□□ 0.86
VIM-203ENST00000469543 ZACNQ401N2 412 aa20.41■□□□□ 0.86
VIM-203ENST00000469543 ZNF394Q53GI3 561 aa20.41■□□□□ 0.86
VIM-203ENST00000469543 ANKS1BQ7Z6G8 1248 aa20.41■□□□□ 0.86
VIM-203ENST00000469543 PCYT2Q99447 389 aa20.41■□□□□ 0.86
VIM-203ENST00000469543 BTBD7Q9P203 1132 aa20.41■□□□□ 0.86
VIM-203ENST00000469543 POLR2AP24928 1970 aaKnown RBP20.41■□□□□ 0.86
VIM-203ENST00000469543 RGPD3A6NKT7 1758 aaPredicted RBP20.41■□□□□ 0.86
VIM-203ENST00000469543 RGPD4Q7Z3J3 1758 aa20.41■□□□□ 0.86
VIM-203ENST00000469543 TP73O15350 636 aa20.41■□□□□ 0.86
VIM-203ENST00000469543 GCNT1Q02742 428 aa20.41■□□□□ 0.86
VIM-203ENST00000469543 STRN3Q13033 797 aa20.41■□□□□ 0.86
VIM-203ENST00000469543 EMC10Q5UCC4 262 aa20.41■□□□□ 0.86
VIM-203ENST00000469543 XRRA1Q6P2D8 792 aa20.41■□□□□ 0.86
VIM-203ENST00000469543 ZBTB33Q86T24 672 aa20.41■□□□□ 0.86
VIM-203ENST00000469543 NLRP14Q86W24 1093 aa20.41■□□□□ 0.86
VIM-203ENST00000469543 CDR2LQ86X02 465 aaPredicted RBP20.41■□□□□ 0.86
VIM-203ENST00000469543 TRIM50Q86XT4 487 aa20.41■□□□□ 0.86
VIM-203ENST00000469543 MYCBPAPQ8TBZ2 947 aa20.41■□□□□ 0.86
VIM-203ENST00000469543 FAM212AQ96EL1 285 aa20.41■□□□□ 0.86
VIM-203ENST00000469543 KLHL11Q9NVR0 708 aa20.41■□□□□ 0.86
VIM-203ENST00000469543 RBAKQ9NYW8 714 aaPredicted RBP20.41■□□□□ 0.86
VIM-203ENST00000469543 PCYOX1Q9UHG3 505 aa20.41■□□□□ 0.86
VIM-203ENST00000469543 NUB1Q9Y5A7 615 aa20.41■□□□□ 0.86
VIM-203ENST00000469543 MAFBQ9Y5Q3 323 aaPredicted RBP20.41■□□□□ 0.86
VIM-203ENST00000469543 MCCD1P59942 119 aaPredicted RBP20.4■□□□□ 0.86
VIM-203ENST00000469543 STXBP2Q15833 593 aa20.4■□□□□ 0.86
VIM-203ENST00000469543 QPCTQ16769 361 aa20.4■□□□□ 0.86
VIM-203ENST00000469543 TMEM63BQ5T3F8 832 aa20.4■□□□□ 0.86
VIM-203ENST00000469543 ZNF473Q8WTR7 871 aaKnown RBP20.4■□□□□ 0.86
VIM-203ENST00000469543 PABPC3Q9H361 631 aaKnown RBP20.4■□□□□ 0.86
VIM-203ENST00000469543 R3HDM2Q9Y2K5 976 aaKnown RBP20.4■□□□□ 0.86
VIM-203ENST00000469543 OATP04181 439 aa20.4■□□□□ 0.86
VIM-203ENST00000469543 GJB1P08034 283 aa20.4■□□□□ 0.86
VIM-203ENST00000469543 FDX1P10109 184 aa20.4■□□□□ 0.86
VIM-203ENST00000469543 MTMR3Q13615 1198 aa20.4■□□□□ 0.86
VIM-203ENST00000469543 LY6KQ17RY6 165 aa20.4■□□□□ 0.86
VIM-203ENST00000469543 ATP13A4Q4VNC1 1196 aa20.4■□□□□ 0.86
VIM-203ENST00000469543 RUFY4Q6ZNE9 571 aa20.4■□□□□ 0.86
VIM-203ENST00000469543 VTI1AQ96AJ9 217 aa20.4■□□□□ 0.86
VIM-203ENST00000469543 HVCN1Q96D96 273 aa20.4■□□□□ 0.86
VIM-203ENST00000469543 MSTO1Q9BUK6 570 aa20.4■□□□□ 0.86
VIM-203ENST00000469543 PORCNQ9H237 461 aa20.4■□□□□ 0.86
VIM-203ENST00000469543 HOXC10Q9NYD6 342 aa20.4■□□□□ 0.86
VIM-203ENST00000469543 USTQ9Y2C2 406 aa20.4■□□□□ 0.86
VIM-203ENST00000469543 FAM187AA6NFU0 413 aa20.4■□□□□ 0.86
VIM-203ENST00000469543 TCF4P15884 667 aa20.4■□□□□ 0.86
VIM-203ENST00000469543 NLGN2Q8NFZ4 835 aa20.4■□□□□ 0.86
VIM-203ENST00000469543 DEPTORQ8TB45 409 aa20.4■□□□□ 0.86
VIM-203ENST00000469543 EPS8L3Q8TE67 593 aaKnown RBP20.4■□□□□ 0.86
VIM-203ENST00000469543 UVRAGQ9P2Y5 699 aa20.4■□□□□ 0.86
VIM-203ENST00000469543 PHIPQ8WWQ0 1821 aa20.39■□□□□ 0.86
VIM-203ENST00000469543 ACO1P21399 889 aaKnown RBP20.39■□□□□ 0.85
VIM-203ENST00000469543 UBA1P22314 1058 aaKnown RBP20.39■□□□□ 0.85
VIM-203ENST00000469543 CCDC38Q502W7 563 aa20.39■□□□□ 0.85
VIM-203ENST00000469543 WDR44Q5JSH3 913 aa20.39■□□□□ 0.85
VIM-203ENST00000469543 DDX23Q9BUQ8 820 aaKnown RBP20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms