RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 TMEM105Q8N8V8 129 aa18.17■□□□□ 0.5
CCDC28B-204ENST00000469003 SPIRE2Q8WWL2 714 aa18.17■□□□□ 0.5
CCDC28B-204ENST00000469003 ATOH1Q92858 354 aaPredicted RBP18.17■□□□□ 0.5
CCDC28B-204ENST00000469003 NXPE3Q969Y0 559 aa18.17■□□□□ 0.5
CCDC28B-204ENST00000469003 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.17■□□□□ 0.5
CCDC28B-204ENST00000469003 KCND2Q9NZV8 630 aa18.17■□□□□ 0.5
CCDC28B-204ENST00000469003 SMC3Q9UQE7 1217 aa18.17■□□□□ 0.5
CCDC28B-204ENST00000469003 CITO14578 2027 aa18.16■□□□□ 0.5
CCDC28B-204ENST00000469003 ADAM12O43184 909 aa18.16■□□□□ 0.5
CCDC28B-204ENST00000469003 GALR2O43603 387 aaPredicted RBP18.16■□□□□ 0.5
CCDC28B-204ENST00000469003 TRAPPC3O43617 180 aa18.16■□□□□ 0.5
CCDC28B-204ENST00000469003 PLS3P13797 630 aa18.16■□□□□ 0.5
CCDC28B-204ENST00000469003 IGFBP6P24592 240 aaPredicted RBP18.16■□□□□ 0.5
CCDC28B-204ENST00000469003 HOXA9P31269 272 aa18.16■□□□□ 0.5
CCDC28B-204ENST00000469003 CLCN5P51795 746 aa18.16■□□□□ 0.5
CCDC28B-204ENST00000469003 OSTNP61366 133 aa18.16■□□□□ 0.5
CCDC28B-204ENST00000469003 RAB33AQ14088 237 aa18.16■□□□□ 0.5
CCDC28B-204ENST00000469003 TMEM119Q4V9L6 283 aa18.16■□□□□ 0.5
CCDC28B-204ENST00000469003 DDX27Q96GQ7 796 aaKnown RBP18.16■□□□□ 0.5
CCDC28B-204ENST00000469003 CDK5RAP3Q96JB5 506 aa18.16■□□□□ 0.5
CCDC28B-204ENST00000469003 ACAP3Q96P50 834 aa18.16■□□□□ 0.5
CCDC28B-204ENST00000469003 TCHPQ9BT92 498 aa18.16■□□□□ 0.5
CCDC28B-204ENST00000469003 GOLGA2P5Q9HBQ8 144 aa18.16■□□□□ 0.5
CCDC28B-204ENST00000469003 SLC38A7Q9NVC3 462 aa18.16■□□□□ 0.5
CCDC28B-204ENST00000469003 MTRRQ9UBK8 725 aa18.16■□□□□ 0.5
CCDC28B-204ENST00000469003 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.16■□□□□ 0.5
CCDC28B-204ENST00000469003 SLC26A4O43511 780 aa18.15■□□□□ 0.5
CCDC28B-204ENST00000469003 C8AP07357 584 aa18.15■□□□□ 0.5
CCDC28B-204ENST00000469003 PLA2G4BP0C869 781 aa18.15■□□□□ 0.5
CCDC28B-204ENST00000469003 KCNE1P15382 129 aa18.15■□□□□ 0.5
CCDC28B-204ENST00000469003 SMTNP53814 917 aa18.15■□□□□ 0.5
CCDC28B-204ENST00000469003 SLC12A3P55017 1021 aa18.15■□□□□ 0.5
CCDC28B-204ENST00000469003 SOX4Q06945 474 aaPredicted RBP18.15■□□□□ 0.5
CCDC28B-204ENST00000469003 RAD51AP2Q09MP3 1159 aa18.15■□□□□ 0.5
CCDC28B-204ENST00000469003 STRN3Q13033 797 aa18.15■□□□□ 0.5
CCDC28B-204ENST00000469003 PPM1LQ5SGD2 360 aa18.15■□□□□ 0.5
CCDC28B-204ENST00000469003 GET4Q7L5D6 327 aaPredicted RBP18.15■□□□□ 0.5
CCDC28B-204ENST00000469003 C3orf58Q8NDZ4 430 aa18.15■□□□□ 0.5
CCDC28B-204ENST00000469003 TMEM161BQ8NDZ6 487 aa18.15■□□□□ 0.5
CCDC28B-204ENST00000469003 RSAD2Q8WXG1 361 aa18.15■□□□□ 0.5
CCDC28B-204ENST00000469003 AK8Q96MA6 479 aa18.15■□□□□ 0.5
CCDC28B-204ENST00000469003 PLIN2Q99541 437 aa18.15■□□□□ 0.5
CCDC28B-204ENST00000469003 FBXL21Q9UKT6 434 aa18.15■□□□□ 0.5
CCDC28B-204ENST00000469003 NARSO43776 548 aaKnown RBP18.14■□□□□ 0.49
CCDC28B-204ENST00000469003 TOM1L1O75674 476 aa18.14■□□□□ 0.49
CCDC28B-204ENST00000469003 POU2F2P09086 479 aa18.14■□□□□ 0.49
CCDC28B-204ENST00000469003 MAPTP10636 758 aaKnown RBP18.14■□□□□ 0.49
CCDC28B-204ENST00000469003 LAMP2P13473 410 aa18.14■□□□□ 0.49
CCDC28B-204ENST00000469003 TKTP29401 623 aaKnown RBP18.14■□□□□ 0.49
CCDC28B-204ENST00000469003 OR1D2P34982 312 aa18.14■□□□□ 0.49
CCDC28B-204ENST00000469003 BRCC3P46736 316 aa18.14■□□□□ 0.49
CCDC28B-204ENST00000469003 UVSSAQ2YD98 709 aa18.14■□□□□ 0.49
CCDC28B-204ENST00000469003 LARP1BQ659C4 914 aaKnown RBP18.14■□□□□ 0.49
CCDC28B-204ENST00000469003 CWF19L1Q69YN2 538 aaKnown RBP18.14■□□□□ 0.49
CCDC28B-204ENST00000469003 ANKS3Q6ZW76 656 aa18.14■□□□□ 0.49
CCDC28B-204ENST00000469003 ZBTB45Q96K62 511 aaPredicted RBP18.14■□□□□ 0.49
CCDC28B-204ENST00000469003 ZMAT2Q96NC0 199 aaKnown RBP18.14■□□□□ 0.49
CCDC28B-204ENST00000469003 TBC1D32Q96NH3 1257 aa18.14■□□□□ 0.49
CCDC28B-204ENST00000469003 CNTN3Q9P232 1028 aa18.14■□□□□ 0.49
CCDC28B-204ENST00000469003 BACE2Q9Y5Z0 518 aa18.14■□□□□ 0.49
CCDC28B-204ENST00000469003 ZFP37Q9Y6Q3 630 aaPredicted RBP18.14■□□□□ 0.49
CCDC28B-204ENST00000469003 FAM186AA6NE01 2351 aa18.14■□□□□ 0.49
CCDC28B-204ENST00000469003 PDCD11Q14690 1871 aaKnown RBP18.14■□□□□ 0.49
CCDC28B-204ENST00000469003 DOCK6Q96HP0 2047 aa18.13■□□□□ 0.49
CCDC28B-204ENST00000469003 CACNA1AO00555 2505 aa18.13■□□□□ 0.49
CCDC28B-204ENST00000469003 I3L4J1 428 aa18.13■□□□□ 0.49
CCDC28B-204ENST00000469003 PODXLO00592 558 aa18.13■□□□□ 0.49
CCDC28B-204ENST00000469003 XYLBO75191 536 aa18.13■□□□□ 0.49
CCDC28B-204ENST00000469003 HARSP12081 509 aaKnown RBP18.13■□□□□ 0.49
CCDC28B-204ENST00000469003 NPR3P17342 541 aa18.13■□□□□ 0.49
CCDC28B-204ENST00000469003 FSHRP23945 695 aa18.13■□□□□ 0.49
CCDC28B-204ENST00000469003 NOLC1Q14978 699 aaKnown RBP eCLIP18.13■□□□□ 0.49
CCDC28B-204ENST00000469003 AXDND1Q5T1B0 1012 aaPredicted RBP18.13■□□□□ 0.49
CCDC28B-204ENST00000469003 ZPBP2Q6X784 338 aa18.13■□□□□ 0.49
CCDC28B-204ENST00000469003 RTL10Q7L3V2 364 aa18.13■□□□□ 0.49
CCDC28B-204ENST00000469003 GRASPQ7Z6J2 395 aaPredicted RBP18.13■□□□□ 0.49
CCDC28B-204ENST00000469003 SLC44A3Q8N4M1 653 aa18.13■□□□□ 0.49
CCDC28B-204ENST00000469003 FLCNQ8NFG4 579 aa18.13■□□□□ 0.49
CCDC28B-204ENST00000469003 LARSQ9P2J5 1176 aaKnown RBP18.13■□□□□ 0.49
CCDC28B-204ENST00000469003 WNT16Q9UBV4 365 aa18.13■□□□□ 0.49
CCDC28B-204ENST00000469003 CDY1Q9Y6F8 540 aa18.13■□□□□ 0.49
CCDC28B-204ENST00000469003 ANHXE9PGG2 379 aa18.12■□□□□ 0.49
CCDC28B-204ENST00000469003 H0YCG3 227 aa18.12■□□□□ 0.49
CCDC28B-204ENST00000469003 CCL16O15467 120 aa18.12■□□□□ 0.49
CCDC28B-204ENST00000469003 BMP15O95972 392 aa18.12■□□□□ 0.49
CCDC28B-204ENST00000469003 SRFP11831 508 aa18.12■□□□□ 0.49
CCDC28B-204ENST00000469003 AOC1P19801 751 aa18.12■□□□□ 0.49
CCDC28B-204ENST00000469003 RPL9P32969 192 aaKnown RBP18.12■□□□□ 0.49
CCDC28B-204ENST00000469003 HTR4Q13639 388 aa18.12■□□□□ 0.49
CCDC28B-204ENST00000469003 ARSHQ5FYA8 562 aa18.12■□□□□ 0.49
CCDC28B-204ENST00000469003 RSPO2Q6UXX9 243 aaPredicted RBP18.12■□□□□ 0.49
CCDC28B-204ENST00000469003 BRAPQ7Z569 592 aa18.12■□□□□ 0.49
CCDC28B-204ENST00000469003 SIX5Q8N196 739 aa18.12■□□□□ 0.49
CCDC28B-204ENST00000469003 SLC7A14Q8TBB6 771 aa18.12■□□□□ 0.49
CCDC28B-204ENST00000469003 KCNN1Q92952 543 aa18.12■□□□□ 0.49
CCDC28B-204ENST00000469003 CALML4Q96GE6 196 aa18.12■□□□□ 0.49
CCDC28B-204ENST00000469003 ANKFY1Q9P2R3 1169 aa18.12■□□□□ 0.49
CCDC28B-204ENST00000469003 NPHP3-ACAD11A0A0J9YXS1 232 aa18.11■□□□□ 0.49
CCDC28B-204ENST00000469003 H0Y858 1186 aa18.11■□□□□ 0.49
CCDC28B-204ENST00000469003 SYN3O14994 580 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms