RNA–Protein interactions for RNA: ENST00000468040.2

SNIP1-202, Transcript of Smad nuclear interacting protein 1, humanhuman

TSL 5

Gene SNIP1, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-202ENST00000468040 PDE11AQ9HCR9 933 aa16.49■□□□□ 0.23
SNIP1-202ENST00000468040 TBC1D13Q9NVG8 400 aa16.49■□□□□ 0.23
SNIP1-202ENST00000468040 COL4A6Q14031 1691 aa16.49■□□□□ 0.23
SNIP1-202ENST00000468040 CEP290O15078 2479 aa16.48■□□□□ 0.23
SNIP1-202ENST00000468040 NFICP08651 508 aa16.48■□□□□ 0.23
SNIP1-202ENST00000468040 DLATP10515 647 aaKnown RBP16.48■□□□□ 0.23
SNIP1-202ENST00000468040 AFF1P51825 1210 aaKnown RBP16.48■□□□□ 0.23
SNIP1-202ENST00000468040 AP3M2P53677 418 aa16.48■□□□□ 0.23
SNIP1-202ENST00000468040 PAN2Q504Q3 1202 aaKnown RBP16.48■□□□□ 0.23
SNIP1-202ENST00000468040 JADE1Q6IE81 842 aa16.48■□□□□ 0.23
SNIP1-202ENST00000468040 DHX40Q8IX18 779 aaKnown RBP16.48■□□□□ 0.23
SNIP1-202ENST00000468040 PARD3BQ8TEW8 1205 aa16.48■□□□□ 0.23
SNIP1-202ENST00000468040 CACTINQ8WUQ7 758 aaKnown RBP16.48■□□□□ 0.23
SNIP1-202ENST00000468040 BORCS6Q96GS4 357 aa16.48■□□□□ 0.23
SNIP1-202ENST00000468040 CNOT6LQ96LI5 555 aaKnown RBP16.48■□□□□ 0.23
SNIP1-202ENST00000468040 ZMAT2Q96NC0 199 aaKnown RBP16.48■□□□□ 0.23
SNIP1-202ENST00000468040 PPP1R10Q96QC0 940 aaKnown RBP16.48■□□□□ 0.23
SNIP1-202ENST00000468040 CGRRF1Q99675 332 aa16.48■□□□□ 0.23
SNIP1-202ENST00000468040 CBX8Q9HC52 389 aa16.48■□□□□ 0.23
SNIP1-202ENST00000468040 UBQLN1Q9UMX0 589 aaKnown RBP16.48■□□□□ 0.23
SNIP1-202ENST00000468040 FNDC1Q4ZHG4 1894 aaPredicted RBP16.48■□□□□ 0.23
SNIP1-202ENST00000468040 CARNS1A5YM72 827 aa16.47■□□□□ 0.23
SNIP1-202ENST00000468040 STX10O60499 249 aa16.47■□□□□ 0.23
SNIP1-202ENST00000468040 TNNI1P19237 187 aa16.47■□□□□ 0.23
SNIP1-202ENST00000468040 CYP3A5P20815 502 aa16.47■□□□□ 0.23
SNIP1-202ENST00000468040 WNT7BP56706 349 aa16.47■□□□□ 0.23
SNIP1-202ENST00000468040 MCCD1P59942 119 aaPredicted RBP16.47■□□□□ 0.23
SNIP1-202ENST00000468040 TPM4P67936 248 aa16.47■□□□□ 0.23
SNIP1-202ENST00000468040 CLDN10P78369 228 aa16.47■□□□□ 0.23
SNIP1-202ENST00000468040 TFAMQ00059 246 aaKnown RBP16.47■□□□□ 0.23
SNIP1-202ENST00000468040 SPAG1Q07617 926 aa16.47■□□□□ 0.23
SNIP1-202ENST00000468040 TUSC3Q13454 348 aa16.47■□□□□ 0.23
SNIP1-202ENST00000468040 NCAPHQ15003 741 aa16.47■□□□□ 0.23
SNIP1-202ENST00000468040 IQCB1Q15051 598 aa16.47■□□□□ 0.23
SNIP1-202ENST00000468040 ZBTB6Q15916 424 aa16.47■□□□□ 0.23
SNIP1-202ENST00000468040 BEST2Q8NFU1 509 aa16.47■□□□□ 0.23
SNIP1-202ENST00000468040 SP7Q8TDD2 431 aaPredicted RBP16.47■□□□□ 0.23
SNIP1-202ENST00000468040 CXCL16Q9H2A7 254 aa16.47■□□□□ 0.23
SNIP1-202ENST00000468040 SAMSN1Q9NSI8 373 aaKnown RBP16.47■□□□□ 0.23
SNIP1-202ENST00000468040 FANCLQ9NW38 375 aa16.47■□□□□ 0.23
SNIP1-202ENST00000468040 MIOSQ9NXC5 875 aa16.47■□□□□ 0.23
SNIP1-202ENST00000468040 PLAGL2Q9UPG8 496 aa16.47■□□□□ 0.23
SNIP1-202ENST00000468040 PCDHA11Q9Y5I1 949 aa16.47■□□□□ 0.23
SNIP1-202ENST00000468040 ANK1P16157 1881 aa16.47■□□□□ 0.23
SNIP1-202ENST00000468040 PDCD11Q14690 1871 aaKnown RBP16.46■□□□□ 0.23
SNIP1-202ENST00000468040 GOLGA6L19H0YKK7 550 aa16.46■□□□□ 0.23
SNIP1-202ENST00000468040 TNNC2P02585 160 aa16.46■□□□□ 0.23
SNIP1-202ENST00000468040 TMEM191BP0C7N4 346 aa16.46■□□□□ 0.23
SNIP1-202ENST00000468040 EEF1GP26641 437 aaKnown RBP16.46■□□□□ 0.23
SNIP1-202ENST00000468040 DSC1Q08554 894 aa16.46■□□□□ 0.23
SNIP1-202ENST00000468040 RAB30Q15771 203 aa16.46■□□□□ 0.23
SNIP1-202ENST00000468040 DUOXA2Q1HG44 320 aa16.46■□□□□ 0.23
SNIP1-202ENST00000468040 DCAF17Q5H9S7 520 aaPredicted RBP16.46■□□□□ 0.23
SNIP1-202ENST00000468040 CDKAL1Q5VV42 579 aa16.46■□□□□ 0.23
SNIP1-202ENST00000468040 FAM109BQ6ICB4 259 aaPredicted RBP16.46■□□□□ 0.23
SNIP1-202ENST00000468040 IRF2BP1Q8IU81 584 aa16.46■□□□□ 0.23
SNIP1-202ENST00000468040 CREBRFQ8IUR6 639 aa16.46■□□□□ 0.23
SNIP1-202ENST00000468040 EFCAB13Q8IY85 973 aa16.46■□□□□ 0.23
SNIP1-202ENST00000468040 FIBCD1Q8N539 461 aa16.46■□□□□ 0.23
SNIP1-202ENST00000468040 ANKRD20A12PQ8NF67 263 aa16.46■□□□□ 0.23
SNIP1-202ENST00000468040 ANKRD36BP1Q96IX9 119 aa16.46■□□□□ 0.23
SNIP1-202ENST00000468040 UROC1Q96N76 676 aa16.46■□□□□ 0.23
SNIP1-202ENST00000468040 INTS13Q9NVM9 706 aa16.46■□□□□ 0.23
SNIP1-202ENST00000468040 TDRD15B5MCY1 1934 aaKnown RBP16.46■□□□□ 0.23
SNIP1-202ENST00000468040 LRRIQ3A6PVS8 624 aaPredicted RBP16.45■□□□□ 0.22
SNIP1-202ENST00000468040 GRXCR1A8MXD5 290 aa16.45■□□□□ 0.22
SNIP1-202ENST00000468040 KCNJ18B7U540 433 aa16.45■□□□□ 0.22
SNIP1-202ENST00000468040 LAG3P18627 525 aa16.45■□□□□ 0.22
SNIP1-202ENST00000468040 GTF2H1P32780 548 aa16.45■□□□□ 0.22
SNIP1-202ENST00000468040 MTIF2P46199 727 aaKnown RBP16.45■□□□□ 0.22
SNIP1-202ENST00000468040 RABGGTBP53611 331 aa16.45■□□□□ 0.22
SNIP1-202ENST00000468040 DLG4P78352 724 aa16.45■□□□□ 0.22
SNIP1-202ENST00000468040 KCNJ12Q14500 433 aa16.45■□□□□ 0.22
SNIP1-202ENST00000468040 NAB2Q15742 525 aa16.45■□□□□ 0.22
SNIP1-202ENST00000468040 TCP11X2Q5H9J9 407 aa16.45■□□□□ 0.22
SNIP1-202ENST00000468040 TCERG1LQ5VWI1 586 aa16.45■□□□□ 0.22
SNIP1-202ENST00000468040 LUZP1Q86V48 1076 aa16.45■□□□□ 0.22
SNIP1-202ENST00000468040 TRIM59Q8IWR1 403 aa16.45■□□□□ 0.22
SNIP1-202ENST00000468040 PLEKHO2Q8TD55 490 aa16.45■□□□□ 0.22
SNIP1-202ENST00000468040 C18orf25Q96B23 403 aaPredicted RBP16.45■□□□□ 0.22
SNIP1-202ENST00000468040 DDX27Q96GQ7 796 aaKnown RBP16.45■□□□□ 0.22
SNIP1-202ENST00000468040 POP1Q99575 1024 aaKnown RBP16.45■□□□□ 0.22
SNIP1-202ENST00000468040 TMEM175Q9BSA9 504 aa16.45■□□□□ 0.22
SNIP1-202ENST00000468040 MTMR12Q9C0I1 747 aa16.45■□□□□ 0.22
SNIP1-202ENST00000468040 AAASQ9NRG9 546 aa16.45■□□□□ 0.22
SNIP1-202ENST00000468040 TUBGCP4Q9UGJ1 667 aa16.45■□□□□ 0.22
SNIP1-202ENST00000468040 MSRAQ9UJ68 235 aa16.45■□□□□ 0.22
SNIP1-202ENST00000468040 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.45■□□□□ 0.22
SNIP1-202ENST00000468040 MRPL42Q9Y6G3 142 aaKnown RBP16.45■□□□□ 0.22
SNIP1-202ENST00000468040 PTPRJQ12913 1337 aa16.45■□□□□ 0.22
SNIP1-202ENST00000468040 ZC3H11AO75152 810 aaKnown RBP eCLIP16.44■□□□□ 0.22
SNIP1-202ENST00000468040 DDHD2O94830 711 aa16.44■□□□□ 0.22
SNIP1-202ENST00000468040 TRIM49P0CI25 452 aa16.44■□□□□ 0.22
SNIP1-202ENST00000468040 TRIM49CP0CI26 452 aa16.44■□□□□ 0.22
SNIP1-202ENST00000468040 ZNF18P17022 549 aa16.44■□□□□ 0.22
SNIP1-202ENST00000468040 CDK11BP21127 795 aaKnown RBP16.44■□□□□ 0.22
SNIP1-202ENST00000468040 LRPAP1P30533 357 aa16.44■□□□□ 0.22
SNIP1-202ENST00000468040 RPL9P32969 192 aaKnown RBP16.44■□□□□ 0.22
SNIP1-202ENST00000468040 SMAD3P84022 425 aaKnown RBP16.44■□□□□ 0.22
SNIP1-202ENST00000468040 HSP90AA4PQ58FG1 418 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms