RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 SCP2P22307 547 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 GLRA2P23416 452 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 RRM1P23921 792 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 MAPK4P31152 587 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 SSTR3P32745 418 aaPredicted RBP9.57□□□□□ -0.88
SYNE1-217ENST00000466159 COILP38432 576 aaPredicted RBP9.57□□□□□ -0.88
SYNE1-217ENST00000466159 PMS2P54278 862 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 MAGOHP61326 146 aaKnown RBP9.57□□□□□ -0.88
SYNE1-217ENST00000466159 CLDN10P78369 228 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 IFFO1Q0D2I5 559 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 STRN3Q13033 797 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 PSMD6Q15008 389 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 ZACNQ401N2 412 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 MCOLN2Q8IZK6 566 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 ZNF302Q9NR11 478 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 HOXC10Q9NYD6 342 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 SLC12A6Q9UHW9 1150 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 MAFBQ9Y5Q3 323 aaPredicted RBP9.57□□□□□ -0.88
SYNE1-217ENST00000466159 FAM169AQ9Y6X4 670 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 MYPNQ86TC9 1320 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 PODXLO00592 558 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 ZC3H11AO75152 810 aaKnown RBP eCLIP9.57□□□□□ -0.88
SYNE1-217ENST00000466159 STAM2O75886 525 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 VNN1O95497 513 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 OATP04181 439 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 EDN1P05305 212 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 PIK3CAP42336 1068 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 STXBP2Q15833 593 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 CYP1B1Q16678 543 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 SEZ6Q53EL9 994 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 WDR44Q5JSH3 913 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 AGBL2Q5U5Z8 902 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 DAB2IPQ5VWQ8 1189 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 SCARA3Q6AZY7 606 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 DLK2Q6UY11 383 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 ENOSF1Q7L5Y1 443 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 RNF25Q96BH1 459 aaPredicted RBP9.57□□□□□ -0.88
SYNE1-217ENST00000466159 CYFIP2Q96F07 1278 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 TARS2Q9BW92 718 aaKnown RBP9.57□□□□□ -0.88
SYNE1-217ENST00000466159 PABPC3Q9H361 631 aaKnown RBP9.57□□□□□ -0.88
SYNE1-217ENST00000466159 PPANQ9NQ55 473 aaKnown RBP9.57□□□□□ -0.88
SYNE1-217ENST00000466159 GGA3Q9NZ52 723 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 ANKFY1Q9P2R3 1169 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 MTUS1Q9ULD2 1270 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 AFG3L2Q9Y4W6 797 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 MROH7Q68CQ1 1323 aa9.57□□□□□ -0.88
SYNE1-217ENST00000466159 POLR2AP24928 1970 aaKnown RBP9.57□□□□□ -0.88
SYNE1-217ENST00000466159 H0YCG3 227 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 K7ERI5 159 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 CAND2O75155 1236 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 PPP2R2AP63151 447 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 NLRP14Q86W24 1093 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 APOBEC3FQ8IUX4 373 aaKnown RBP9.56□□□□□ -0.88
SYNE1-217ENST00000466159 ANKRD35Q8N283 1001 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 ARFGAP2Q8N6H7 521 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 C1orf54Q8WWF1 131 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 CCT8L2Q96SF2 557 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 FAM107BQ9H098 131 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 PORCNQ9H237 461 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 SEMA4AQ9H3S1 761 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 DHX33Q9H6R0 707 aaKnown RBP9.56□□□□□ -0.88
SYNE1-217ENST00000466159 APOBEC3GQ9HC16 384 aaKnown RBP9.56□□□□□ -0.88
SYNE1-217ENST00000466159 KIAA1586Q9HCI6 787 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 FBXO40Q9UH90 709 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 PCDHB2Q9Y5E7 798 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 STYXL1Q9Y6J8 313 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 E7EVH7 732 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 ATG7O95352 703 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 ARL2P36404 184 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 MAGEA9P43362 315 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 ENPEPQ07075 957 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 PDE4CQ08493 712 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 SNX1Q13596 522 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 SLC29A2Q14542 456 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 SPDYCQ5MJ68 293 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 PASD1Q8IV76 773 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 UHMK1Q8TAS1 419 aaKnown RBP9.56□□□□□ -0.88
SYNE1-217ENST00000466159 DEPTORQ8TB45 409 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 MYCBPAPQ8TBZ2 947 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 ZNF473Q8WTR7 871 aaKnown RBP9.56□□□□□ -0.88
SYNE1-217ENST00000466159 CEP89Q96ST8 783 aa9.56□□□□□ -0.88
SYNE1-217ENST00000466159 RBAKQ9NYW8 714 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-217ENST00000466159 SSC5DA1L4H1 1573 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 HARSP12081 509 aaKnown RBP9.55□□□□□ -0.88
SYNE1-217ENST00000466159 ACO1P21399 889 aaKnown RBP9.55□□□□□ -0.88
SYNE1-217ENST00000466159 HIRAP54198 1017 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-217ENST00000466159 EIF3BP55884 814 aaKnown RBP9.55□□□□□ -0.88
SYNE1-217ENST00000466159 TREML2Q5T2D2 321 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 TMEM270Q6UE05 265 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 EFCAB13Q8IY85 973 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 SLC7A3Q8WY07 619 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 HERPUD2Q9BSE4 406 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 MSTO1Q9BUK6 570 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 TSPYL1Q9H0U9 437 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 UMODL1Q5DID0 1318 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 TLDC2A0PJX2 215 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 SMIM23A6NLE4 172 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 TTLL13PA6NNM8 815 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 O00370 1275 aa9.55□□□□□ -0.88
SYNE1-217ENST00000466159 FSCN2O14926 492 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms