RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 WRAP73Q9P2S5 460 aaPredicted RBP10.83□□□□□ -0.68
USP39-212ENST00000465514 COL4A3BPQ9Y5P4 624 aa10.83□□□□□ -0.68
USP39-212ENST00000465514 CNTNAP2Q9UHC6 1331 aa10.83□□□□□ -0.68
USP39-212ENST00000465514 MARCH6O60337 910 aa10.82□□□□□ -0.68
USP39-212ENST00000465514 CCNT1O60563 726 aaKnown RBP10.82□□□□□ -0.68
USP39-212ENST00000465514 DTNBO60941 627 aa10.82□□□□□ -0.68
USP39-212ENST00000465514 XYLBO75191 536 aa10.82□□□□□ -0.68
USP39-212ENST00000465514 CDKL5O76039 1030 aa10.82□□□□□ -0.68
USP39-212ENST00000465514 EPN2O95208 641 aa10.82□□□□□ -0.68
USP39-212ENST00000465514 C8AP07357 584 aa10.82□□□□□ -0.68
USP39-212ENST00000465514 GCFC2P16383 781 aaKnown RBP10.82□□□□□ -0.68
USP39-212ENST00000465514 HOXA11P31270 313 aaPredicted RBP10.82□□□□□ -0.68
USP39-212ENST00000465514 HOXC13P31276 330 aa10.82□□□□□ -0.68
USP39-212ENST00000465514 RFC5P40937 340 aa10.82□□□□□ -0.68
USP39-212ENST00000465514 LAMTOR4Q0VGL1 99 aa10.82□□□□□ -0.68
USP39-212ENST00000465514 SCRN1Q12765 414 aa10.82□□□□□ -0.68
USP39-212ENST00000465514 GRM2Q14416 872 aa10.82□□□□□ -0.68
USP39-212ENST00000465514 PPP4R3AQ6IN85 833 aa10.82□□□□□ -0.68
USP39-212ENST00000465514 SRGAP1Q7Z6B7 1085 aa10.82□□□□□ -0.68
USP39-212ENST00000465514 MRPL10Q7Z7H8 261 aaKnown RBP10.82□□□□□ -0.68
USP39-212ENST00000465514 NEK8Q86SG6 692 aa10.82□□□□□ -0.68
USP39-212ENST00000465514 EXOC8Q8IYI6 725 aa10.82□□□□□ -0.68
USP39-212ENST00000465514 OXER1Q8TDS5 423 aa10.82□□□□□ -0.68
USP39-212ENST00000465514 PSPC1Q8WXF1 523 aaKnown RBP10.82□□□□□ -0.68
USP39-212ENST00000465514 FAM3CQ92520 227 aa10.82□□□□□ -0.68
USP39-212ENST00000465514 HAS1Q92839 578 aa10.82□□□□□ -0.68
USP39-212ENST00000465514 GPR62Q9BZJ7 368 aa10.82□□□□□ -0.68
USP39-212ENST00000465514 DHX33Q9H6R0 707 aaKnown RBP10.82□□□□□ -0.68
USP39-212ENST00000465514 BMP2KQ9NSY1 1161 aaPredicted RBP10.82□□□□□ -0.68
USP39-212ENST00000465514 GJB4Q9NTQ9 266 aa10.82□□□□□ -0.68
USP39-212ENST00000465514 PPME1Q9Y570 386 aa10.82□□□□□ -0.68
USP39-212ENST00000465514 KIF26AQ9ULI4 1882 aaPredicted RBP10.81□□□□□ -0.68
USP39-212ENST00000465514 ZBTB39O15060 712 aa10.81□□□□□ -0.68
USP39-212ENST00000465514 TBX3O15119 743 aa10.81□□□□□ -0.68
USP39-212ENST00000465514 CHRNB1P11230 501 aa10.81□□□□□ -0.68
USP39-212ENST00000465514 XBP1P17861 261 aa10.81□□□□□ -0.68
USP39-212ENST00000465514 CREMQ03060 361 aa10.81□□□□□ -0.68
USP39-212ENST00000465514 DSC1Q08554 894 aa10.81□□□□□ -0.68
USP39-212ENST00000465514 EPHA7Q15375 998 aa10.81□□□□□ -0.68
USP39-212ENST00000465514 USP41Q3LFD5 358 aa10.81□□□□□ -0.68
USP39-212ENST00000465514 PABPC1LQ4VXU2 614 aaKnown RBP10.81□□□□□ -0.68
USP39-212ENST00000465514 XKR9Q5GH70 373 aa10.81□□□□□ -0.68
USP39-212ENST00000465514 PLA2G2CQ5R387 149 aa10.81□□□□□ -0.68
USP39-212ENST00000465514 UBXN11Q5T124 520 aa10.81□□□□□ -0.68
USP39-212ENST00000465514 SH3PXD2AQ5TCZ1 1133 aa10.81□□□□□ -0.68
USP39-212ENST00000465514 TANGO2Q6ICL3 276 aa10.81□□□□□ -0.68
USP39-212ENST00000465514 TCEAL6Q6IPX3 200 aa10.81□□□□□ -0.68
USP39-212ENST00000465514 FUT10Q6P4F1 479 aa10.81□□□□□ -0.68
USP39-212ENST00000465514 PRSS55Q6UWB4 352 aaPredicted RBP10.81□□□□□ -0.68
USP39-212ENST00000465514 PIK3AP1Q6ZUJ8 805 aa10.81□□□□□ -0.68
USP39-212ENST00000465514 OTUD6AQ7L8S5 288 aa10.81□□□□□ -0.68
USP39-212ENST00000465514 C4orf19Q8IY42 314 aa10.81□□□□□ -0.68
USP39-212ENST00000465514 SPEM1Q8N4L4 309 aa10.81□□□□□ -0.68
USP39-212ENST00000465514 TCEAL3Q969E4 200 aa10.81□□□□□ -0.68
USP39-212ENST00000465514 MCRS1Q96EZ8 462 aa10.81□□□□□ -0.68
USP39-212ENST00000465514 DYDC2Q96IM9 177 aa10.81□□□□□ -0.68
USP39-212ENST00000465514 LXNQ9BS40 222 aa10.81□□□□□ -0.68
USP39-212ENST00000465514 BRD9Q9H8M2 597 aa10.81□□□□□ -0.68
USP39-212ENST00000465514 RGL1Q9NZL6 768 aa10.81□□□□□ -0.68
USP39-212ENST00000465514 PIAS3Q9Y6X2 628 aa10.81□□□□□ -0.68
USP39-212ENST00000465514 ASCC3Q8N3C0 2202 aaKnown RBP10.81□□□□□ -0.68
USP39-212ENST00000465514 TENM4Q6N022 2769 aa10.81□□□□□ -0.68
USP39-212ENST00000465514 ASAP2O43150 1006 aa10.8□□□□□ -0.68
USP39-212ENST00000465514 PFKFB2O60825 505 aa10.8□□□□□ -0.68
USP39-212ENST00000465514 PAPSS2O95340 614 aaPredicted RBP10.8□□□□□ -0.68
USP39-212ENST00000465514 FCARP24071 287 aa10.8□□□□□ -0.68
USP39-212ENST00000465514 HOXA9P31269 272 aa10.8□□□□□ -0.68
USP39-212ENST00000465514 YWHABP31946 246 aaKnown RBP10.8□□□□□ -0.68
USP39-212ENST00000465514 RAP1GAPP47736 663 aa10.8□□□□□ -0.68
USP39-212ENST00000465514 CTTNQ14247 550 aaKnown RBP10.8□□□□□ -0.68
USP39-212ENST00000465514 EMC2Q15006 297 aa10.8□□□□□ -0.68
USP39-212ENST00000465514 SLC5A9Q2M3M2 681 aa10.8□□□□□ -0.68
USP39-212ENST00000465514 EARS2Q5JPH6 523 aaKnown RBP10.8□□□□□ -0.68
USP39-212ENST00000465514 NCAPH2Q6IBW4 605 aa10.8□□□□□ -0.68
USP39-212ENST00000465514 KIAA1211LQ6NV74 962 aa10.8□□□□□ -0.68
USP39-212ENST00000465514 Q6ZS52 159 aa10.8□□□□□ -0.68
USP39-212ENST00000465514 FERMT3Q86UX7 667 aa10.8□□□□□ -0.68
USP39-212ENST00000465514 RNF149Q8NC42 400 aa10.8□□□□□ -0.68
USP39-212ENST00000465514 SLC7A14Q8TBB6 771 aa10.8□□□□□ -0.68
USP39-212ENST00000465514 TCP11Q8WWU5 503 aa10.8□□□□□ -0.68
USP39-212ENST00000465514 ELSPBP1Q96BH3 223 aa10.8□□□□□ -0.68
USP39-212ENST00000465514 LOXL4Q96JB6 756 aa10.8□□□□□ -0.68
USP39-212ENST00000465514 NAP1L4Q99733 375 aaKnown RBP10.8□□□□□ -0.68
USP39-212ENST00000465514 EDEM2Q9BV94 578 aa10.8□□□□□ -0.68
USP39-212ENST00000465514 ZSWIM4Q9H7M6 989 aa10.8□□□□□ -0.68
USP39-212ENST00000465514 C2orf42Q9NWW7 574 aa10.8□□□□□ -0.68
USP39-212ENST00000465514 DNMT3BQ9UBC3 853 aaKnown RBP10.8□□□□□ -0.68
USP39-212ENST00000465514 KCNH3Q9ULD8 1083 aa10.8□□□□□ -0.68
USP39-212ENST00000465514 TPCN1Q9ULQ1 816 aa10.8□□□□□ -0.68
USP39-212ENST00000465514 CACNA1EQ15878 2313 aa10.8□□□□□ -0.68
USP39-212ENST00000465514 STK36Q9NRP7 1315 aa10.8□□□□□ -0.68
USP39-212ENST00000465514 ATG2BQ96BY7 2078 aa10.8□□□□□ -0.68
USP39-212ENST00000465514 KALRNO60229 2985 aa10.79□□□□□ -0.68
USP39-212ENST00000465514 FAM205CA6NFA0 338 aa10.79□□□□□ -0.68
USP39-212ENST00000465514 ARL5CA6NH57 179 aa10.79□□□□□ -0.68
USP39-212ENST00000465514 SLITRK3O94933 977 aa10.79□□□□□ -0.68
USP39-212ENST00000465514 BAG4O95429 457 aaKnown RBP10.79□□□□□ -0.68
USP39-212ENST00000465514 CTDNEP1O95476 244 aa10.79□□□□□ -0.68
USP39-212ENST00000465514 ITGA4P13612 1032 aa10.79□□□□□ -0.68
USP39-212ENST00000465514 CEBPBP17676 345 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms