RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 ZNF543Q08ER8 600 aa20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 TMEM154Q6P9G4 183 aa20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 BTNL9Q6UXG8 535 aa20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 NPHS2Q9NP85 383 aa20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 HSPBP1Q9NZL4 362 aa20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 WDR35Q9P2L0 1181 aa20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 NPHP3-ACAD11A0A0J9YXS1 232 aa20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 O00370 1275 aa20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 ACADSP16219 412 aa20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 XPAP23025 273 aaPredicted RBP20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 HDAC4P56524 1084 aa20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 TBCCQ15814 346 aa20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 ACTRT1Q8TDG2 376 aa20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 ALG6Q9Y672 507 aa20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 CD44P16070 742 aaKnown RBP20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 PMLP29590 882 aa20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 TYK2P29597 1187 aa20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 PPARGP37231 505 aaPredicted RBP20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 ARHGDIAP52565 204 aa20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 YWHAHQ04917 246 aaPredicted RBP20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 CUL3Q13618 768 aa20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 DDX42Q86XP3 938 aaKnown RBP eCLIP20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 THNSL1Q8IYQ7 743 aa20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 KIF2BQ8N4N8 673 aa20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 TTC8Q8TAM2 541 aa20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 RNF103-CHMP3A0A140T963 221 aa20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 EIF3EP60228 445 aaKnown RBP20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 AP1B1Q10567 949 aa20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 OR6B3Q8NGW1 331 aa20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 ADA2Q9NZK5 511 aa20.05■□□□□ 0.8
CCDC88B-204ENST00000463837 FDX1P10109 184 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 COILP38432 576 aaPredicted RBP20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 SLC27A3Q5K4L6 730 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 MIGA2Q7L4E1 593 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 POLR3CQ9BUI4 534 aaPredicted RBP20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 SENP2Q9HC62 589 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 MTMR4Q9NYA4 1195 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 M0QYV0 167 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 SLC9A1P19634 815 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 MAGEA4P43358 317 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 SLC29A2Q14542 456 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 CEP55Q53EZ4 464 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 MTHFD1LQ6UB35 978 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 ZNF677Q86XU0 584 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 UBN1Q9NPG3 1134 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 NRXN1Q9ULB1 1477 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 C21orf2O43822 256 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 VHLP40337 213 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 HERVK_113P62684 666 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 TRIM65Q6PJ69 517 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 NSUN6Q8TEA1 469 aaKnown RBP20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 RAPGEF5Q92565 580 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 ANKRD27Q96NW4 1050 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 PPP1R16BQ96T49 567 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 ZNF341Q9BYN7 854 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 RBAKQ9NYW8 714 aaPredicted RBP20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 EHD2Q9NZN4 543 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 GOLGA8RI6L899 631 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 APOL1O14791 398 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 ENO1P06733 434 aaKnown RBP20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 COMTP21964 271 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 KDSRQ06136 332 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 STXBP2Q15833 593 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 ARL8AQ96BM9 186 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 MAGEB5Q9BZ81 275 aa20.04■□□□□ 0.8
CCDC88B-204ENST00000463837 PIGHQ14442 188 aaPredicted RBP20.03■□□□□ 0.8
CCDC88B-204ENST00000463837 CEP19Q96LK0 163 aa20.03■□□□□ 0.8
CCDC88B-204ENST00000463837 ZMAT2Q96NC0 199 aaKnown RBP20.03■□□□□ 0.8
CCDC88B-204ENST00000463837 MRPL4Q9BYD3 311 aaKnown RBP20.03■□□□□ 0.8
CCDC88B-204ENST00000463837 PDP2Q9P2J9 529 aa20.03■□□□□ 0.8
CCDC88B-204ENST00000463837 AGO2Q9UKV8 859 aaKnown RBP20.03■□□□□ 0.8
CCDC88B-204ENST00000463837 STAP1Q9ULZ2 295 aa20.03■□□□□ 0.8
CCDC88B-204ENST00000463837 TNS3Q68CZ2 1445 aa20.03■□□□□ 0.8
CCDC88B-204ENST00000463837 GHRP10912 638 aa20.03■□□□□ 0.8
CCDC88B-204ENST00000463837 MAPK7Q13164 816 aa20.03■□□□□ 0.8
CCDC88B-204ENST00000463837 ANKMY2Q8IV38 441 aa20.03■□□□□ 0.8
CCDC88B-204ENST00000463837 CMTM5Q96DZ9 223 aa20.03■□□□□ 0.8
CCDC88B-204ENST00000463837 POLR3FQ9H1D9 316 aaPredicted RBP20.03■□□□□ 0.8
CCDC88B-204ENST00000463837 NQO1P15559 274 aaKnown RBP20.03■□□□□ 0.8
CCDC88B-204ENST00000463837 SCTRP47872 440 aa20.03■□□□□ 0.8
CCDC88B-204ENST00000463837 CCNYL1Q8N7R7 359 aa20.03■□□□□ 0.8
CCDC88B-204ENST00000463837 CD248Q9HCU0 757 aa20.03■□□□□ 0.8
CCDC88B-204ENST00000463837 HOXC10Q9NYD6 342 aa20.03■□□□□ 0.8
CCDC88B-204ENST00000463837 AP3B1O00203 1094 aa20.03■□□□□ 0.8
CCDC88B-204ENST00000463837 AKR1B1P15121 316 aa20.03■□□□□ 0.8
CCDC88B-204ENST00000463837 PHKA2P46019 1235 aa20.03■□□□□ 0.8
CCDC88B-204ENST00000463837 STX3Q13277 289 aa20.03■□□□□ 0.8
CCDC88B-204ENST00000463837 NLRP4Q96MN2 994 aa20.03■□□□□ 0.8
CCDC88B-204ENST00000463837 CELF4Q9BZC1 486 aaKnown RBP20.03■□□□□ 0.8
CCDC88B-204ENST00000463837 FAM8A1Q9UBU6 413 aa20.03■□□□□ 0.8
CCDC88B-204ENST00000463837 CNGA3Q16281 694 aa20.02■□□□□ 0.8
CCDC88B-204ENST00000463837 HABP4Q5JVS0 413 aaKnown RBP20.02■□□□□ 0.8
CCDC88B-204ENST00000463837 LRRC34Q8IZ02 419 aa20.02■□□□□ 0.8
CCDC88B-204ENST00000463837 NSL1Q96IY1 281 aa20.02■□□□□ 0.8
CCDC88B-204ENST00000463837 KYAT1Q16773 422 aa20.02■□□□□ 0.8
CCDC88B-204ENST00000463837 ZNF568Q3ZCX4 644 aa20.02■□□□□ 0.8
CCDC88B-204ENST00000463837 NT5DC1Q5TFE4 455 aa20.02■□□□□ 0.8
CCDC88B-204ENST00000463837 EEPD1Q7L9B9 569 aa20.02■□□□□ 0.8
CCDC88B-204ENST00000463837 CPS1P31327 1500 aa20.02■□□□□ 0.8
CCDC88B-204ENST00000463837 F5H423 210 aaPredicted RBP20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms