RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 ACOT2P49753 483 aa16.13■□□□□ 0.17
LDLR-202ENST00000455727 DHX9Q08211 1270 aaKnown RBP16.13■□□□□ 0.17
LDLR-202ENST00000455727 ZNF844Q08AG5 666 aa16.13■□□□□ 0.17
LDLR-202ENST00000455727 MCOLN2Q8IZK6 566 aa16.13■□□□□ 0.17
LDLR-202ENST00000455727 MAGOHBQ96A72 148 aaKnown RBP16.13■□□□□ 0.17
LDLR-202ENST00000455727 PCYT2Q99447 389 aa16.13■□□□□ 0.17
LDLR-202ENST00000455727 PLVAPQ9BX97 442 aa16.13■□□□□ 0.17
LDLR-202ENST00000455727 RBAKQ9NYW8 714 aaPredicted RBP16.13■□□□□ 0.17
LDLR-202ENST00000455727 ADGRA2Q96PE1 1338 aa16.13■□□□□ 0.17
LDLR-202ENST00000455727 COPB2P35606 906 aa16.13■□□□□ 0.17
LDLR-202ENST00000455727 FAM160B1Q5W0V3 765 aa16.13■□□□□ 0.17
LDLR-202ENST00000455727 FOXR1Q6PIV2 292 aa16.13■□□□□ 0.17
LDLR-202ENST00000455727 ZDHHC14Q8IZN3 488 aa16.13■□□□□ 0.17
LDLR-202ENST00000455727 C12orf50Q8NA57 414 aaPredicted RBP16.13■□□□□ 0.17
LDLR-202ENST00000455727 UBLCP1Q8WVY7 318 aaPredicted RBP16.13■□□□□ 0.17
LDLR-202ENST00000455727 CNTN6Q9UQ52 1028 aa16.13■□□□□ 0.17
LDLR-202ENST00000455727 TULP2O00295 520 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 VNN1O95497 513 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 CYP1A1P04798 512 aaPredicted RBP16.12■□□□□ 0.17
LDLR-202ENST00000455727 ACO1P21399 889 aaKnown RBP16.12■□□□□ 0.17
LDLR-202ENST00000455727 PIK3CAP42336 1068 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 STAT5BP51692 787 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 WNT7BP56706 349 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 CENPCQ03188 943 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 TRIM72Q6ZMU5 477 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 ARFGAP2Q8N6H7 521 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 C18orf8Q96DM3 657 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 BTBD6Q96KE9 485 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 CGRRF1Q99675 332 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 MSTO1Q9BUK6 570 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 SPATC1LQ9H0A9 340 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 PARP2Q9UGN5 583 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 SOWAHBA6NEL2 793 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 ADCY3O60266 1144 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 ZEB2O60315 1214 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 MAFO75444 373 aaPredicted RBP16.12■□□□□ 0.17
LDLR-202ENST00000455727 SLC1A1P43005 524 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 EIF3BP55884 814 aaKnown RBP16.12■□□□□ 0.17
LDLR-202ENST00000455727 CUL2Q13617 745 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 PRKG1Q13976 671 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 AGBL2Q5U5Z8 902 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 PPP1R2P3Q6NXS1 205 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 CCDC137Q6PK04 289 aaKnown RBP16.12■□□□□ 0.17
LDLR-202ENST00000455727 ZPBP2Q6X784 338 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 ELMO3Q96BJ8 720 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 TARS2Q9BW92 718 aaKnown RBP16.12■□□□□ 0.17
LDLR-202ENST00000455727 FAM129AQ9BZQ8 928 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 TRIM31Q9BZY9 425 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 LRRC37A2A6NM11 1700 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 OTOFQ9HC10 1997 aa16.12■□□□□ 0.17
LDLR-202ENST00000455727 TBXAS1P24557 533 aaPredicted RBP16.11■□□□□ 0.17
LDLR-202ENST00000455727 MAPK4P31152 587 aa16.11■□□□□ 0.17
LDLR-202ENST00000455727 FNTAP49354 379 aa16.11■□□□□ 0.17
LDLR-202ENST00000455727 AP3M2P53677 418 aa16.11■□□□□ 0.17
LDLR-202ENST00000455727 SIX1Q15475 284 aaPredicted RBP16.11■□□□□ 0.17
LDLR-202ENST00000455727 DNAJC21Q5F1R6 531 aaKnown RBP16.11■□□□□ 0.17
LDLR-202ENST00000455727 SRLQ86TD4 932 aa16.11■□□□□ 0.17
LDLR-202ENST00000455727 SEPT1Q8WYJ6 367 aa16.11■□□□□ 0.17
LDLR-202ENST00000455727 VCPIP1Q96JH7 1222 aa16.11■□□□□ 0.17
LDLR-202ENST00000455727 ZBTB45Q96K62 511 aaPredicted RBP16.11■□□□□ 0.17
LDLR-202ENST00000455727 LRRC19Q9H756 370 aa16.11■□□□□ 0.17
LDLR-202ENST00000455727 CSADQ9Y600 493 aa16.11■□□□□ 0.17
LDLR-202ENST00000455727 PTPRJQ12913 1337 aa16.11■□□□□ 0.17
LDLR-202ENST00000455727 CNTNAP2Q9UHC6 1331 aa16.11■□□□□ 0.17
LDLR-202ENST00000455727 SRRM3A6NNA2 597 aaPredicted RBP16.11■□□□□ 0.17
LDLR-202ENST00000455727 MYO1FO00160 1098 aa16.11■□□□□ 0.17
LDLR-202ENST00000455727 FSCN2O14926 492 aa16.11■□□□□ 0.17
LDLR-202ENST00000455727 COILP38432 576 aaPredicted RBP16.11■□□□□ 0.17
LDLR-202ENST00000455727 EFNA5P52803 228 aa16.11■□□□□ 0.17
LDLR-202ENST00000455727 CAPSQ13938 189 aa16.11■□□□□ 0.17
LDLR-202ENST00000455727 LMBRD2Q68DH5 695 aaPredicted RBP16.11■□□□□ 0.17
LDLR-202ENST00000455727 SMYD5Q6GMV2 418 aa16.11■□□□□ 0.17
LDLR-202ENST00000455727 TTC27Q6P3X3 843 aa16.11■□□□□ 0.17
LDLR-202ENST00000455727 METTL7BQ6UX53 244 aa16.11■□□□□ 0.17
LDLR-202ENST00000455727 ZDHHC24Q6UX98 284 aa16.11■□□□□ 0.17
LDLR-202ENST00000455727 SLCO2A1Q92959 643 aa16.11■□□□□ 0.17
LDLR-202ENST00000455727 FAM167AQ96KS9 214 aa16.11■□□□□ 0.17
LDLR-202ENST00000455727 RSPH14Q9UHP6 348 aa16.11■□□□□ 0.17
LDLR-202ENST00000455727 ANAPC7Q9UJX3 599 aa16.11■□□□□ 0.17
LDLR-202ENST00000455727 NSFP46459 744 aaKnown RBP16.1■□□□□ 0.17
LDLR-202ENST00000455727 GRM1Q13255 1194 aa16.1■□□□□ 0.17
LDLR-202ENST00000455727 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.1■□□□□ 0.172e-6■■□□□ 12
LDLR-202ENST00000455727 BCAS4Q8TDM0 211 aa16.1■□□□□ 0.17
LDLR-202ENST00000455727 GRHL1Q9NZI5 618 aa16.1■□□□□ 0.17
LDLR-202ENST00000455727 SBF1O95248 1867 aa16.1■□□□□ 0.17
LDLR-202ENST00000455727 IRF6O14896 467 aa16.1■□□□□ 0.17
LDLR-202ENST00000455727 GAS2O43903 313 aaKnown RBP16.1■□□□□ 0.17
LDLR-202ENST00000455727 CLTAP09496 248 aa16.1■□□□□ 0.17
LDLR-202ENST00000455727 NUDT17P0C025 328 aa16.1■□□□□ 0.17
LDLR-202ENST00000455727 RARAP10276 462 aa16.1■□□□□ 0.17
LDLR-202ENST00000455727 ATP1A2P50993 1020 aa16.1■□□□□ 0.17
LDLR-202ENST00000455727 PTP4A2Q12974 167 aa16.1■□□□□ 0.17
LDLR-202ENST00000455727 KCNV1Q6PIU1 500 aa16.1■□□□□ 0.17
LDLR-202ENST00000455727 MON1BQ7L1V2 547 aa16.1■□□□□ 0.17
LDLR-202ENST00000455727 CPNE8Q86YQ8 564 aa16.1■□□□□ 0.17
LDLR-202ENST00000455727 EXOC8Q8IYI6 725 aa16.1■□□□□ 0.17
LDLR-202ENST00000455727 OR2W6PQ8NHA6 318 aa16.1■□□□□ 0.17
LDLR-202ENST00000455727 MAIP1Q8WWC4 291 aa16.1■□□□□ 0.17
LDLR-202ENST00000455727 FAM84AQ96KN4 292 aa16.1■□□□□ 0.17
LDLR-202ENST00000455727 APOBEC3GQ9HC16 384 aaKnown RBP16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms