RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 VGLL4Q14135 290 aa12.78□□□□□ -0.36
SMPD4-213ENST00000454468 SMTNL2Q2TAL5 461 aa12.78□□□□□ -0.36
SMPD4-213ENST00000454468 APOBEC3FQ8IUX4 373 aaKnown RBP12.78□□□□□ -0.36
SMPD4-213ENST00000454468 RBBP8NLQ8NC74 664 aaPredicted RBP12.78□□□□□ -0.36
SMPD4-213ENST00000454468 SLITRK6Q9H5Y7 841 aa12.78□□□□□ -0.36
SMPD4-213ENST00000454468 CEP83Q9Y592 693 aa12.78□□□□□ -0.36
SMPD4-213ENST00000454468 UBE4BO95155 1302 aa12.78□□□□□ -0.36
SMPD4-213ENST00000454468 DLEC1Q9Y238 1755 aa12.78□□□□□ -0.36
SMPD4-213ENST00000454468 SPDYE16A6NNV3 312 aaPredicted RBP12.78□□□□□ -0.36
SMPD4-213ENST00000454468 FOXO6A8MYZ6 492 aa12.78□□□□□ -0.36
SMPD4-213ENST00000454468 CFHP08603 1231 aa12.78□□□□□ -0.36
SMPD4-213ENST00000454468 CDR2Q01850 454 aa12.78□□□□□ -0.36
SMPD4-213ENST00000454468 KRT17Q04695 432 aa12.78□□□□□ -0.36
SMPD4-213ENST00000454468 Q3C1V9 767 aa12.78□□□□□ -0.36
SMPD4-213ENST00000454468 ZNF568Q3ZCX4 644 aa12.78□□□□□ -0.36
SMPD4-213ENST00000454468 DCAF12L1Q5VU92 463 aa12.78□□□□□ -0.36
SMPD4-213ENST00000454468 SRLQ86TD4 932 aa12.78□□□□□ -0.36
SMPD4-213ENST00000454468 MAP4K3Q8IVH8 894 aa12.78□□□□□ -0.36
SMPD4-213ENST00000454468 CARD9Q9H257 536 aa12.78□□□□□ -0.36
SMPD4-213ENST00000454468 XPNPEP1Q9NQW7 623 aa12.78□□□□□ -0.36
SMPD4-213ENST00000454468 CAPN7Q9Y6W3 813 aa12.78□□□□□ -0.36
SMPD4-213ENST00000454468 UMODL1Q5DID0 1318 aa12.77□□□□□ -0.36
SMPD4-213ENST00000454468 THSD7AQ9UPZ6 1657 aa12.77□□□□□ -0.36
SMPD4-213ENST00000454468 MIF4GDA9UHW6 222 aaKnown RBP12.77□□□□□ -0.36
SMPD4-213ENST00000454468 POC1B-GALNT4F8VUJ3 575 aa12.77□□□□□ -0.36
SMPD4-213ENST00000454468 IRF6O14896 467 aa12.77□□□□□ -0.36
SMPD4-213ENST00000454468 GAS8O95995 478 aa12.77□□□□□ -0.36
SMPD4-213ENST00000454468 SHBGP04278 402 aa12.77□□□□□ -0.36
SMPD4-213ENST00000454468 CDO1Q16878 200 aa12.77□□□□□ -0.36
SMPD4-213ENST00000454468 LONRF1Q17RB8 773 aa12.77□□□□□ -0.36
SMPD4-213ENST00000454468 SCYL2Q6P3W7 929 aa12.77□□□□□ -0.36
SMPD4-213ENST00000454468 SESTD1Q86VW0 696 aa12.77□□□□□ -0.36
SMPD4-213ENST00000454468 CEP120Q8N960 986 aa12.77□□□□□ -0.36
SMPD4-213ENST00000454468 GDAP1Q8TB36 358 aa12.77□□□□□ -0.36
SMPD4-213ENST00000454468 SCFD2Q8WU76 684 aa12.77□□□□□ -0.36
SMPD4-213ENST00000454468 HES6Q96HZ4 224 aa12.77□□□□□ -0.36
SMPD4-213ENST00000454468 C9orf72Q96LT7 481 aa12.77□□□□□ -0.36
SMPD4-213ENST00000454468 MYCBPQ99417 103 aaPredicted RBP12.77□□□□□ -0.36
SMPD4-213ENST00000454468 FAM49AQ9H0Q0 323 aaPredicted RBP12.77□□□□□ -0.36
SMPD4-213ENST00000454468 ZNF214Q9UL59 606 aaPredicted RBP12.77□□□□□ -0.36
SMPD4-213ENST00000454468 EIF3HO15372 352 aaKnown RBP eCLIP12.77□□□□□ -0.374e-7■□□□□ 8.8
SMPD4-213ENST00000454468 CAND2O75155 1236 aa12.77□□□□□ -0.37
SMPD4-213ENST00000454468 ATF2P15336 505 aa12.77□□□□□ -0.37
SMPD4-213ENST00000454468 LSP1P33241 339 aa12.77□□□□□ -0.37
SMPD4-213ENST00000454468 FAM160B1Q5W0V3 765 aa12.77□□□□□ -0.37
SMPD4-213ENST00000454468 FOXR2Q6PJQ5 311 aa12.77□□□□□ -0.37
SMPD4-213ENST00000454468 TMEM130Q8N3G9 435 aa12.77□□□□□ -0.37
SMPD4-213ENST00000454468 GPR88Q9GZN0 384 aa12.77□□□□□ -0.37
SMPD4-213ENST00000454468 KRT1P04264 644 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 RARAP10276 462 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 RALAP11233 206 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 GTF2H1P32780 548 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 RAP1GAPP47736 663 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 TGFB2P61812 414 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 ITIH3Q06033 890 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 MAPK6Q16659 721 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 WDR72Q3MJ13 1102 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.76□□□□□ -0.37
SMPD4-213ENST00000454468 C10orf88Q9H8K7 445 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 C19orf81C9J6K1 198 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 TXNP10599 105 aaKnown RBP12.76□□□□□ -0.37
SMPD4-213ENST00000454468 KCNA2P16389 499 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 KIF22Q14807 665 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 DNAJC24Q6P3W2 148 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 CCDC121Q6ZUS5 278 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 HOOK3Q86VS8 718 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 SLC13A5Q86YT5 568 aaPredicted RBP12.76□□□□□ -0.37
SMPD4-213ENST00000454468 EPS8L3Q8TE67 593 aaKnown RBP12.76□□□□□ -0.37
SMPD4-213ENST00000454468 CAVIN3Q969G5 261 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 VPS37BQ9H9H4 285 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 PSD3Q9NYI0 1048 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 O00370 1275 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 RGS20O76081 388 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 MAP3K6O95382 1288 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 MAPTP10636 758 aaKnown RBP12.76□□□□□ -0.37
SMPD4-213ENST00000454468 CHRNB2P17787 502 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 GLRA2P23416 452 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 RPS12P25398 132 aaKnown RBP12.76□□□□□ -0.37
SMPD4-213ENST00000454468 RPL21P46778 160 aaKnown RBP12.76□□□□□ -0.37
SMPD4-213ENST00000454468 MYL6P60660 151 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 KYNUQ16719 465 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 KCNT1Q5JUK3 1230 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 ACAD10Q6JQN1 1059 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 SLC39A4Q6P5W5 647 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 C1orf131Q8NDD1 294 aaKnown RBP12.76□□□□□ -0.37
SMPD4-213ENST00000454468 SLC16A10Q8TF71 515 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 PSPC1Q8WXF1 523 aaKnown RBP12.76□□□□□ -0.37
SMPD4-213ENST00000454468 CALR3Q96L12 384 aaKnown RBP12.76□□□□□ -0.37
SMPD4-213ENST00000454468 MCEEQ96PE7 176 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 CHST7Q9NS84 486 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 ANAPC5Q9UJX4 755 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 INTUQ9ULD6 942 aa12.76□□□□□ -0.37
SMPD4-213ENST00000454468 HMGB1P1B2RPK0 211 aaPredicted RBP12.75□□□□□ -0.37
SMPD4-213ENST00000454468 DDX3YO15523 660 aaKnown RBP12.75□□□□□ -0.37
SMPD4-213ENST00000454468 EXTL3O43909 919 aa12.75□□□□□ -0.37
SMPD4-213ENST00000454468 GRAP2O75791 330 aa12.75□□□□□ -0.37
SMPD4-213ENST00000454468 PPP1R37O75864 691 aa12.75□□□□□ -0.37
SMPD4-213ENST00000454468 PIAS1O75925 651 aa12.75□□□□□ -0.37
SMPD4-213ENST00000454468 MUTP22033 750 aa12.75□□□□□ -0.37
SMPD4-213ENST00000454468 UBA1P22314 1058 aaKnown RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms