RNA–Protein interactions for RNA: ENST00000454134.1

NCKIPSD-208, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 3

Gene NCKIPSD, Length 998 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-208ENST00000454134 FBXO2Q9UK22 296 aaPredicted RBP18■□□□□ 0.47
NCKIPSD-208ENST00000454134 ODF2LQ9ULJ1 636 aa18■□□□□ 0.47
NCKIPSD-208ENST00000454134 MTMR6Q9Y217 621 aa18■□□□□ 0.47
NCKIPSD-208ENST00000454134 USTQ9Y2C2 406 aa18■□□□□ 0.47
NCKIPSD-208ENST00000454134 VWA8A3KMH1 1905 aa18■□□□□ 0.47
NCKIPSD-208ENST00000454134 TMEM189-UBE2V1I3L0A0 370 aa17.99■□□□□ 0.47
NCKIPSD-208ENST00000454134 FAM13AO94988 1023 aa17.99■□□□□ 0.47
NCKIPSD-208ENST00000454134 KRT18P05783 430 aaKnown RBP17.99■□□□□ 0.47
NCKIPSD-208ENST00000454134 PLA2G5P39877 138 aa17.99■□□□□ 0.47
NCKIPSD-208ENST00000454134 MATR3P43243 847 aaKnown RBP eCLIP17.99■□□□□ 0.47
NCKIPSD-208ENST00000454134 BRCC3P46736 316 aa17.99■□□□□ 0.47
NCKIPSD-208ENST00000454134 ZPBP2Q6X784 338 aa17.99■□□□□ 0.47
NCKIPSD-208ENST00000454134 ZNF707Q96C28 371 aaPredicted RBP17.99■□□□□ 0.47
NCKIPSD-208ENST00000454134 FAM122AQ96E09 287 aa17.99■□□□□ 0.47
NCKIPSD-208ENST00000454134 ASIC4Q96FT7 647 aa17.99■□□□□ 0.47
NCKIPSD-208ENST00000454134 MFSD14AQ96MC6 490 aa17.99■□□□□ 0.47
NCKIPSD-208ENST00000454134 UROC1Q96N76 676 aa17.99■□□□□ 0.47
NCKIPSD-208ENST00000454134 PLEKHA4Q9H4M7 779 aa17.99■□□□□ 0.47
NCKIPSD-208ENST00000454134 MYO10Q9HD67 2058 aa17.99■□□□□ 0.47
NCKIPSD-208ENST00000454134 K7ENM7 598 aa17.98■□□□□ 0.47
NCKIPSD-208ENST00000454134 CLDN3O15551 220 aa17.98■□□□□ 0.47
NCKIPSD-208ENST00000454134 KCNE1P15382 129 aa17.98■□□□□ 0.47
NCKIPSD-208ENST00000454134 FGFR3P22607 806 aa17.98■□□□□ 0.47
NCKIPSD-208ENST00000454134 TKTP29401 623 aaKnown RBP17.98■□□□□ 0.47
NCKIPSD-208ENST00000454134 MCL1Q07820 350 aa17.98■□□□□ 0.47
NCKIPSD-208ENST00000454134 SLC10A6Q3KNW5 377 aa17.98■□□□□ 0.47
NCKIPSD-208ENST00000454134 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.98■□□□□ 0.47
NCKIPSD-208ENST00000454134 OTOP3Q7RTS5 596 aa17.98■□□□□ 0.47
NCKIPSD-208ENST00000454134 BMP8AQ7Z5Y6 402 aa17.98■□□□□ 0.47
NCKIPSD-208ENST00000454134 PLCD3Q8N3E9 789 aa17.98■□□□□ 0.47
NCKIPSD-208ENST00000454134 TMEM130Q8N3G9 435 aa17.98■□□□□ 0.47
NCKIPSD-208ENST00000454134 HDAC7Q8WUI4 952 aa17.98■□□□□ 0.47
NCKIPSD-208ENST00000454134 LARP4BQ92615 738 aaKnown RBP17.98■□□□□ 0.47
NCKIPSD-208ENST00000454134 ACSF2Q96CM8 615 aaPredicted RBP17.98■□□□□ 0.47
NCKIPSD-208ENST00000454134 PIDD1Q9HB75 910 aa17.98■□□□□ 0.47
NCKIPSD-208ENST00000454134 PARVGQ9HBI0 331 aa17.98■□□□□ 0.47
NCKIPSD-208ENST00000454134 SLC38A7Q9NVC3 462 aa17.98■□□□□ 0.47
NCKIPSD-208ENST00000454134 CNTN3Q9P232 1028 aa17.98■□□□□ 0.47
NCKIPSD-208ENST00000454134 SORCS3Q9UPU3 1222 aa17.98■□□□□ 0.47
NCKIPSD-208ENST00000454134 CITO14578 2027 aa17.98■□□□□ 0.47
NCKIPSD-208ENST00000454134 MTCL1Q9Y4B5 1905 aaKnown RBP17.98■□□□□ 0.47
NCKIPSD-208ENST00000454134 H0YCG3 227 aa17.97■□□□□ 0.47
NCKIPSD-208ENST00000454134 PODXLO00592 558 aa17.97■□□□□ 0.47
NCKIPSD-208ENST00000454134 N4BP1O75113 896 aaKnown RBP17.97■□□□□ 0.47
NCKIPSD-208ENST00000454134 C1RP00736 705 aa17.97■□□□□ 0.47
NCKIPSD-208ENST00000454134 CXCL8P10145 99 aa17.97■□□□□ 0.47
NCKIPSD-208ENST00000454134 LIG4P49917 911 aa17.97■□□□□ 0.47
NCKIPSD-208ENST00000454134 ZNF131P52739 623 aa17.97■□□□□ 0.47
NCKIPSD-208ENST00000454134 SPAG1Q07617 926 aa17.97■□□□□ 0.47
NCKIPSD-208ENST00000454134 MTMR3Q13615 1198 aa17.97■□□□□ 0.47
NCKIPSD-208ENST00000454134 RSPO2Q6UXX9 243 aaPredicted RBP17.97■□□□□ 0.47
NCKIPSD-208ENST00000454134 DDX27Q96GQ7 796 aaKnown RBP17.97■□□□□ 0.47
NCKIPSD-208ENST00000454134 USP28Q96RU2 1077 aa17.97■□□□□ 0.47
NCKIPSD-208ENST00000454134 WDR6Q9NNW5 1121 aaKnown RBP17.97■□□□□ 0.47
NCKIPSD-208ENST00000454134 ZDHHC7Q9NXF8 308 aa17.97■□□□□ 0.47
NCKIPSD-208ENST00000454134 FBXW11Q9UKB1 542 aa17.97■□□□□ 0.47
NCKIPSD-208ENST00000454134 TBX20Q9UMR3 447 aa17.97■□□□□ 0.47
NCKIPSD-208ENST00000454134 ARIH1Q9Y4X5 557 aaPredicted RBP17.97■□□□□ 0.47
NCKIPSD-208ENST00000454134 SRPRBQ9Y5M8 271 aaKnown RBP17.97■□□□□ 0.47
NCKIPSD-208ENST00000454134 CLUHO75153 1309 aa17.97■□□□□ 0.47
NCKIPSD-208ENST00000454134 STX6O43752 255 aa17.96■□□□□ 0.47
NCKIPSD-208ENST00000454134 TRAK2O60296 914 aa17.96■□□□□ 0.47
NCKIPSD-208ENST00000454134 TBCAO75347 108 aaKnown RBP17.96■□□□□ 0.47
NCKIPSD-208ENST00000454134 ZMYND10O75800 440 aa17.96■□□□□ 0.47
NCKIPSD-208ENST00000454134 PDGFBP01127 241 aaPredicted RBP17.96■□□□□ 0.47
NCKIPSD-208ENST00000454134 NMT1P30419 496 aaKnown RBP17.96■□□□□ 0.47
NCKIPSD-208ENST00000454134 OR1D2P34982 312 aa17.96■□□□□ 0.47
NCKIPSD-208ENST00000454134 DDIT3P35638 169 aa17.96■□□□□ 0.47
NCKIPSD-208ENST00000454134 TNFSF9P41273 254 aa17.96■□□□□ 0.47
NCKIPSD-208ENST00000454134 ZBTB41Q5SVQ8 909 aa17.96■□□□□ 0.47
NCKIPSD-208ENST00000454134 PDXDC1Q6P996 788 aa17.96■□□□□ 0.47
NCKIPSD-208ENST00000454134 CYP26C1Q6V0L0 522 aa17.96■□□□□ 0.47
NCKIPSD-208ENST00000454134 PRKD2Q9BZL6 878 aa17.96■□□□□ 0.47
NCKIPSD-208ENST00000454134 MTRRQ9UBK8 725 aa17.96■□□□□ 0.47
NCKIPSD-208ENST00000454134 TUBGCP4Q9UGJ1 667 aa17.96■□□□□ 0.47
NCKIPSD-208ENST00000454134 HNRNPDLO14979 420 aaKnown RBP17.95■□□□□ 0.46
NCKIPSD-208ENST00000454134 TRAPPC3O43617 180 aa17.95■□□□□ 0.46
NCKIPSD-208ENST00000454134 CLTAP09496 248 aa17.95■□□□□ 0.46
NCKIPSD-208ENST00000454134 GBP2P32456 591 aaPredicted RBP17.95■□□□□ 0.46
NCKIPSD-208ENST00000454134 ZC2HC1CQ53FD0 456 aaPredicted RBP17.95■□□□□ 0.46
NCKIPSD-208ENST00000454134 LIN9Q5TKA1 542 aa17.95■□□□□ 0.46
NCKIPSD-208ENST00000454134 DYMQ7RTS9 669 aa17.95■□□□□ 0.46
NCKIPSD-208ENST00000454134 SUGP1Q8IWZ8 645 aaKnown RBP17.95■□□□□ 0.46
NCKIPSD-208ENST00000454134 UBALD2Q8IYN6 164 aa17.95■□□□□ 0.46
NCKIPSD-208ENST00000454134 FBXL6Q8N531 539 aa17.95■□□□□ 0.46
NCKIPSD-208ENST00000454134 MYADMQ96S97 322 aa17.95■□□□□ 0.46
NCKIPSD-208ENST00000454134 FIZ1Q96SL8 496 aa17.95■□□□□ 0.46
NCKIPSD-208ENST00000454134 RHOBTB2Q9BYZ6 727 aa17.95■□□□□ 0.46
NCKIPSD-208ENST00000454134 CCDC39Q9UFE4 941 aa17.95■□□□□ 0.46
NCKIPSD-208ENST00000454134 CDY1Q9Y6F8 540 aa17.95■□□□□ 0.46
NCKIPSD-208ENST00000454134 PAPLNO95428 1278 aa17.94■□□□□ 0.46
NCKIPSD-208ENST00000454134 C8AP07357 584 aa17.94■□□□□ 0.46
NCKIPSD-208ENST00000454134 RPL9P32969 192 aaKnown RBP17.94■□□□□ 0.46
NCKIPSD-208ENST00000454134 RAB33AQ14088 237 aa17.94■□□□□ 0.46
NCKIPSD-208ENST00000454134 PPM1LQ5SGD2 360 aa17.94■□□□□ 0.46
NCKIPSD-208ENST00000454134 IER5LQ5T953 404 aa17.94■□□□□ 0.46
NCKIPSD-208ENST00000454134 FOXD4L5Q5VV16 416 aaPredicted RBP17.94■□□□□ 0.46
NCKIPSD-208ENST00000454134 RRAGBQ5VZM2 374 aa17.94■□□□□ 0.46
NCKIPSD-208ENST00000454134 SLC39A4Q6P5W5 647 aa17.94■□□□□ 0.46
NCKIPSD-208ENST00000454134 ANKS3Q6ZW76 656 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms