RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 ARSHQ5FYA8 562 aa18.64■□□□□ 0.57
PRPF40A-204ENST00000450303 GLRA4Q5JXX5 417 aa18.64■□□□□ 0.57
PRPF40A-204ENST00000450303 GLYCTKQ8IVS8 523 aa18.64■□□□□ 0.57
PRPF40A-204ENST00000450303 TIPINQ9BVW5 301 aa18.64■□□□□ 0.57
PRPF40A-204ENST00000450303 MRPL4Q9BYD3 311 aaKnown RBP18.64■□□□□ 0.57
PRPF40A-204ENST00000450303 CDT1Q9H211 546 aa18.64■□□□□ 0.57
PRPF40A-204ENST00000450303 ZMYM2Q9UBW7 1377 aa18.64■□□□□ 0.57
PRPF40A-204ENST00000450303 SPATA31D3P0C874 917 aa18.63■□□□□ 0.57
PRPF40A-204ENST00000450303 HARSP12081 509 aaKnown RBP18.63■□□□□ 0.57
PRPF40A-204ENST00000450303 PLS3P13797 630 aa18.63■□□□□ 0.57
PRPF40A-204ENST00000450303 DSG1Q02413 1049 aa18.63■□□□□ 0.57
PRPF40A-204ENST00000450303 NAB2Q15742 525 aa18.63■□□□□ 0.57
PRPF40A-204ENST00000450303 ZNF568Q3ZCX4 644 aa18.63■□□□□ 0.57
PRPF40A-204ENST00000450303 HERC4Q5GLZ8 1057 aaPredicted RBP18.63■□□□□ 0.57
PRPF40A-204ENST00000450303 SPATA31D4Q6ZUB0 917 aa18.63■□□□□ 0.57
PRPF40A-204ENST00000450303 RIN2Q8WYP3 895 aaPredicted RBP18.63■□□□□ 0.57
PRPF40A-204ENST00000450303 ZBTB45Q96K62 511 aaPredicted RBP18.63■□□□□ 0.57
PRPF40A-204ENST00000450303 TCHPQ9BT92 498 aa18.63■□□□□ 0.57
PRPF40A-204ENST00000450303 NUP62CLQ9H1M0 184 aa18.63■□□□□ 0.57
PRPF40A-204ENST00000450303 C17orf75Q9HAS0 396 aa18.63■□□□□ 0.57
PRPF40A-204ENST00000450303 CHST7Q9NS84 486 aa18.63■□□□□ 0.57
PRPF40A-204ENST00000450303 KBTBD4Q9NVX7 518 aa18.63■□□□□ 0.57
PRPF40A-204ENST00000450303 KCND2Q9NZV8 630 aa18.63■□□□□ 0.57
PRPF40A-204ENST00000450303 SSX2IPQ9Y2D8 614 aa18.63■□□□□ 0.57
PRPF40A-204ENST00000450303 KIF4AO95239 1232 aa18.62■□□□□ 0.57
PRPF40A-204ENST00000450303 KRT18P05783 430 aaKnown RBP18.62■□□□□ 0.57
PRPF40A-204ENST00000450303 RPL17P18621 184 aaKnown RBP18.62■□□□□ 0.57
PRPF40A-204ENST00000450303 IGFBP6P24592 240 aaPredicted RBP18.62■□□□□ 0.57
PRPF40A-204ENST00000450303 MTHFRP42898 656 aa18.62■□□□□ 0.57
PRPF40A-204ENST00000450303 AFMP43652 599 aa18.62■□□□□ 0.57
PRPF40A-204ENST00000450303 USP41Q3LFD5 358 aa18.62■□□□□ 0.57
PRPF40A-204ENST00000450303 ATAT1Q5SQI0 421 aa18.62■□□□□ 0.57
PRPF40A-204ENST00000450303 APBB1IPQ7Z5R6 666 aaPredicted RBP18.62■□□□□ 0.57
PRPF40A-204ENST00000450303 GPBP1Q86WP2 473 aa18.62■□□□□ 0.57
PRPF40A-204ENST00000450303 PALB2Q86YC2 1186 aa18.62■□□□□ 0.57
PRPF40A-204ENST00000450303 CCDC47Q96A33 483 aaKnown RBP18.62■□□□□ 0.57
PRPF40A-204ENST00000450303 PAGE5Q96GU1 130 aa18.62■□□□□ 0.57
PRPF40A-204ENST00000450303 RIPOR3Q96MK2 946 aa18.62■□□□□ 0.57
PRPF40A-204ENST00000450303 NTPCRQ9BSD7 190 aaKnown RBP18.62■□□□□ 0.57
PRPF40A-204ENST00000450303 CLSTN2Q9H4D0 955 aa18.62■□□□□ 0.57
PRPF40A-204ENST00000450303 RXFP1Q9HBX9 757 aa18.62■□□□□ 0.57
PRPF40A-204ENST00000450303 PTPRHQ9HD43 1115 aa18.62■□□□□ 0.57
PRPF40A-204ENST00000450303 MYO10Q9HD67 2058 aa18.61■□□□□ 0.57
PRPF40A-204ENST00000450303 C2orf16Q68DN1 1984 aa18.61■□□□□ 0.57
PRPF40A-204ENST00000450303 ADH1AP07327 375 aa18.61■□□□□ 0.57
PRPF40A-204ENST00000450303 GRM5P41594 1212 aa18.61■□□□□ 0.57
PRPF40A-204ENST00000450303 MRE11P49959 708 aa18.61■□□□□ 0.57
PRPF40A-204ENST00000450303 SMTNP53814 917 aa18.61■□□□□ 0.57
PRPF40A-204ENST00000450303 STRN3Q13033 797 aa18.61■□□□□ 0.57
PRPF40A-204ENST00000450303 SEZ6Q53EL9 994 aa18.61■□□□□ 0.57
PRPF40A-204ENST00000450303 CCDC183Q5T5S1 534 aa18.61■□□□□ 0.57
PRPF40A-204ENST00000450303 PRSS55Q6UWB4 352 aaPredicted RBP18.61■□□□□ 0.57
PRPF40A-204ENST00000450303 CEP57Q86XR8 500 aa18.61■□□□□ 0.57
PRPF40A-204ENST00000450303 TMEM161BQ8NDZ6 487 aa18.61■□□□□ 0.57
PRPF40A-204ENST00000450303 SPIRE2Q8WWL2 714 aa18.61■□□□□ 0.57
PRPF40A-204ENST00000450303 NECTIN4Q96NY8 510 aa18.61■□□□□ 0.57
PRPF40A-204ENST00000450303 CCDC94Q9BW85 323 aaPredicted RBP18.61■□□□□ 0.57
PRPF40A-204ENST00000450303 GOLGA2P5Q9HBQ8 144 aa18.61■□□□□ 0.57
PRPF40A-204ENST00000450303 MAN1C1Q9NR34 630 aa18.61■□□□□ 0.57
PRPF40A-204ENST00000450303 SF3B1O75533 1304 aaKnown RBP eCLIP18.6■□□□□ 0.57
PRPF40A-204ENST00000450303 PRR33A8MZF0 331 aa18.6■□□□□ 0.57
PRPF40A-204ENST00000450303 C2CD4DB7Z1M9 353 aa18.6■□□□□ 0.57
PRPF40A-204ENST00000450303 ABLIM1O14639 778 aa18.6■□□□□ 0.57
PRPF40A-204ENST00000450303 SMC2O95347 1197 aa18.6■□□□□ 0.57
PRPF40A-204ENST00000450303 MAPTP10636 758 aaKnown RBP18.6■□□□□ 0.57
PRPF40A-204ENST00000450303 YARSP54577 528 aaKnown RBP18.6■□□□□ 0.57
PRPF40A-204ENST00000450303 POSTNQ15063 836 aa18.6■□□□□ 0.57
PRPF40A-204ENST00000450303 RTP2Q5QGT7 225 aa18.6■□□□□ 0.57
PRPF40A-204ENST00000450303 FAM171A1Q5VUB5 890 aa18.6■□□□□ 0.57
PRPF40A-204ENST00000450303 MPZL3Q6UWV2 235 aa18.6■□□□□ 0.57
PRPF40A-204ENST00000450303 EDAQ92838 391 aa18.6■□□□□ 0.57
PRPF40A-204ENST00000450303 PPP1R10Q96QC0 940 aaKnown RBP18.6■□□□□ 0.57
PRPF40A-204ENST00000450303 C7orf25Q9BPX7 421 aa18.6■□□□□ 0.57
PRPF40A-204ENST00000450303 REEP2Q9BRK0 252 aa18.6■□□□□ 0.57
PRPF40A-204ENST00000450303 ZHX3Q9H4I2 956 aa18.6■□□□□ 0.57
PRPF40A-204ENST00000450303 SFXN1Q9H9B4 322 aa18.6■□□□□ 0.57
PRPF40A-204ENST00000450303 ANKFY1Q9P2R3 1169 aa18.6■□□□□ 0.57
PRPF40A-204ENST00000450303 CITO14578 2027 aa18.6■□□□□ 0.57
PRPF40A-204ENST00000450303 MTCL1Q9Y4B5 1905 aaKnown RBP18.6■□□□□ 0.57
PRPF40A-204ENST00000450303 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.59■□□□□ 0.57
PRPF40A-204ENST00000450303 SMIM28A0A1B0GU29 152 aa18.59■□□□□ 0.57
PRPF40A-204ENST00000450303 LETM1O95202 739 aaPredicted RBP18.59■□□□□ 0.57
PRPF40A-204ENST00000450303 GLUD1P00367 558 aa18.59■□□□□ 0.57
PRPF40A-204ENST00000450303 MCF2P10911 925 aa18.59■□□□□ 0.57
PRPF40A-204ENST00000450303 PROZP22891 400 aa18.59■□□□□ 0.57
PRPF40A-204ENST00000450303 CLCNKBP51801 687 aa18.59■□□□□ 0.57
PRPF40A-204ENST00000450303 CAVIN1Q6NZI2 390 aaKnown RBP18.59■□□□□ 0.57
PRPF40A-204ENST00000450303 GPR149Q86SP6 731 aa18.59■□□□□ 0.57
PRPF40A-204ENST00000450303 MYCT1Q8N699 235 aa18.59■□□□□ 0.57
PRPF40A-204ENST00000450303 STAMQ92783 540 aa18.59■□□□□ 0.57
PRPF40A-204ENST00000450303 ACAP3Q96P50 834 aa18.59■□□□□ 0.57
PRPF40A-204ENST00000450303 LARSQ9P2J5 1176 aaKnown RBP18.59■□□□□ 0.57
PRPF40A-204ENST00000450303 NR2E1Q9Y466 385 aa18.59■□□□□ 0.57
PRPF40A-204ENST00000450303 VWA8A3KMH1 1905 aa18.59■□□□□ 0.57
PRPF40A-204ENST00000450303 TECTAO75443 2155 aa18.58■□□□□ 0.57
PRPF40A-204ENST00000450303 CCDC195A0A1B0GUA6 201 aa18.58■□□□□ 0.56
PRPF40A-204ENST00000450303 FAM13AO94988 1023 aa18.58■□□□□ 0.56
PRPF40A-204ENST00000450303 MATR3P43243 847 aaKnown RBP eCLIP18.58■□□□□ 0.56
PRPF40A-204ENST00000450303 NCKAP1LP55160 1127 aa18.58■□□□□ 0.56
PRPF40A-204ENST00000450303 ZXDAP98168 799 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms