RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 LONP1P36776 959 aaKnown RBP22.72■■□□□ 1.23
SDC1-205ENST00000447124 BRCC3P46736 316 aa22.72■■□□□ 1.23
SDC1-205ENST00000447124 CREMQ03060 361 aa22.72■■□□□ 1.23
SDC1-205ENST00000447124 STRN3Q13033 797 aa22.72■■□□□ 1.23
SDC1-205ENST00000447124 MTMR3Q13615 1198 aa22.72■■□□□ 1.23
SDC1-205ENST00000447124 SLC10A6Q3KNW5 377 aa22.72■■□□□ 1.23
SDC1-205ENST00000447124 FAM173BQ6P4H8 233 aa22.72■■□□□ 1.23
SDC1-205ENST00000447124 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.72■■□□□ 1.23
SDC1-205ENST00000447124 GPBP1Q86WP2 473 aa22.72■■□□□ 1.23
SDC1-205ENST00000447124 UBALD2Q8IYN6 164 aa22.72■■□□□ 1.23
SDC1-205ENST00000447124 ACSF2Q96CM8 615 aaPredicted RBP22.72■■□□□ 1.23
SDC1-205ENST00000447124 CALML4Q96GE6 196 aa22.72■■□□□ 1.23
SDC1-205ENST00000447124 REEP2Q9BRK0 252 aa22.72■■□□□ 1.23
SDC1-205ENST00000447124 PRKD2Q9BZL6 878 aa22.72■■□□□ 1.23
SDC1-205ENST00000447124 TOPORSQ9NS56 1045 aaPredicted RBP22.72■■□□□ 1.23
SDC1-205ENST00000447124 WDFY4Q6ZS81 3184 aa22.71■■□□□ 1.23
SDC1-205ENST00000447124 DENND4AQ7Z401 1863 aa22.71■■□□□ 1.23
SDC1-205ENST00000447124 VWA8A3KMH1 1905 aa22.71■■□□□ 1.23
SDC1-205ENST00000447124 VCPP55072 806 aaKnown RBP22.71■■□□□ 1.23
SDC1-205ENST00000447124 NCKAP1LP55160 1127 aa22.71■■□□□ 1.23
SDC1-205ENST00000447124 RESTQ13127 1097 aa22.71■■□□□ 1.23
SDC1-205ENST00000447124 ZPBP2Q6X784 338 aa22.71■■□□□ 1.23
SDC1-205ENST00000447124 HAUS6Q7Z4H7 955 aa22.71■■□□□ 1.23
SDC1-205ENST00000447124 RAD54LQ92698 747 aa22.71■■□□□ 1.23
SDC1-205ENST00000447124 KCNN1Q92952 543 aa22.71■■□□□ 1.23
SDC1-205ENST00000447124 C18orf25Q96B23 403 aaPredicted RBP22.71■■□□□ 1.23
SDC1-205ENST00000447124 EPSTI1Q96J88 318 aa22.71■■□□□ 1.23
SDC1-205ENST00000447124 UROC1Q96N76 676 aa22.71■■□□□ 1.23
SDC1-205ENST00000447124 MYADMQ96S97 322 aa22.71■■□□□ 1.23
SDC1-205ENST00000447124 KCNH6Q9H252 994 aa22.71■■□□□ 1.23
SDC1-205ENST00000447124 ZDHHC7Q9NXF8 308 aa22.71■■□□□ 1.23
SDC1-205ENST00000447124 FBXW11Q9UKB1 542 aa22.71■■□□□ 1.23
SDC1-205ENST00000447124 TKTP29401 623 aaKnown RBP22.7■■□□□ 1.22
SDC1-205ENST00000447124 MCL1Q07820 350 aa22.7■■□□□ 1.22
SDC1-205ENST00000447124 SPECC1Q5M775 1068 aa22.7■■□□□ 1.22
SDC1-205ENST00000447124 ELMSAN1Q6PJG2 1045 aa22.7■■□□□ 1.22
SDC1-205ENST00000447124 TMEM130Q8N3G9 435 aa22.7■■□□□ 1.22
SDC1-205ENST00000447124 CCSER1Q9C0I3 900 aa22.7■■□□□ 1.22
SDC1-205ENST00000447124 KCNK12Q9HB15 430 aa22.7■■□□□ 1.22
SDC1-205ENST00000447124 CNTN3Q9P232 1028 aa22.7■■□□□ 1.22
SDC1-205ENST00000447124 LARSQ9P2J5 1176 aaKnown RBP22.7■■□□□ 1.22
SDC1-205ENST00000447124 MYH11P35749 1972 aa22.69■■□□□ 1.22
SDC1-205ENST00000447124 CLUHO75153 1309 aa22.69■■□□□ 1.22
SDC1-205ENST00000447124 PODXLO00592 558 aa22.69■■□□□ 1.22
SDC1-205ENST00000447124 PDCP20941 246 aa22.69■■□□□ 1.22
SDC1-205ENST00000447124 MARCKSP29966 332 aaPredicted RBP22.69■■□□□ 1.22
SDC1-205ENST00000447124 AVPR2P30518 371 aa22.69■■□□□ 1.22
SDC1-205ENST00000447124 HOXD11P31277 338 aaPredicted RBP22.69■■□□□ 1.22
SDC1-205ENST00000447124 OR1D2P34982 312 aa22.69■■□□□ 1.22
SDC1-205ENST00000447124 ZNF131P52739 623 aa22.69■■□□□ 1.22
SDC1-205ENST00000447124 RAB33AQ14088 237 aa22.69■■□□□ 1.22
SDC1-205ENST00000447124 NOLC1Q14978 699 aaKnown RBP eCLIP22.69■■□□□ 1.22
SDC1-205ENST00000447124 SUGP1Q8IWZ8 645 aaKnown RBP22.69■■□□□ 1.22
SDC1-205ENST00000447124 PRSS33Q8NF86 280 aa22.69■■□□□ 1.22
SDC1-205ENST00000447124 DDX27Q96GQ7 796 aaKnown RBP22.69■■□□□ 1.22
SDC1-205ENST00000447124 FIZ1Q96SL8 496 aa22.69■■□□□ 1.22
SDC1-205ENST00000447124 PIDD1Q9HB75 910 aa22.69■■□□□ 1.22
SDC1-205ENST00000447124 FOXD4L1Q9NU39 408 aa22.69■■□□□ 1.22
SDC1-205ENST00000447124 SLC38A7Q9NVC3 462 aa22.69■■□□□ 1.22
SDC1-205ENST00000447124 ANKFY1Q9P2R3 1169 aa22.69■■□□□ 1.22
SDC1-205ENST00000447124 MTRRQ9UBK8 725 aa22.69■■□□□ 1.22
SDC1-205ENST00000447124 ODF2LQ9ULJ1 636 aa22.69■■□□□ 1.22
SDC1-205ENST00000447124 CLDN3O15551 220 aa22.68■■□□□ 1.22
SDC1-205ENST00000447124 DDIT3P35638 169 aa22.68■■□□□ 1.22
SDC1-205ENST00000447124 PDXDC1Q6P996 788 aa22.68■■□□□ 1.22
SDC1-205ENST00000447124 MYCT1Q8N699 235 aa22.68■■□□□ 1.22
SDC1-205ENST00000447124 RSAD2Q8WXG1 361 aa22.68■■□□□ 1.22
SDC1-205ENST00000447124 INTS4Q96HW7 963 aaKnown RBP22.68■■□□□ 1.22
SDC1-205ENST00000447124 FBXO2Q9UK22 296 aaPredicted RBP22.68■■□□□ 1.22
SDC1-205ENST00000447124 MTMR6Q9Y217 621 aa22.68■■□□□ 1.22
SDC1-205ENST00000447124 BACE2Q9Y5Z0 518 aa22.68■■□□□ 1.22
SDC1-205ENST00000447124 PIEZO1Q92508 2521 aa22.68■■□□□ 1.22
SDC1-205ENST00000447124 GBP2P32456 591 aaPredicted RBP22.67■■□□□ 1.22
SDC1-205ENST00000447124 NTHL1P78549 312 aa22.67■■□□□ 1.22
SDC1-205ENST00000447124 NHLH1Q02575 133 aa22.67■■□□□ 1.22
SDC1-205ENST00000447124 TDGQ13569 410 aa22.67■■□□□ 1.22
SDC1-205ENST00000447124 CLIC6Q96NY7 704 aa22.67■■□□□ 1.22
SDC1-205ENST00000447124 EPS15L1Q9UBC2 864 aa22.67■■□□□ 1.22
SDC1-205ENST00000447124 TBX20Q9UMR3 447 aa22.67■■□□□ 1.22
SDC1-205ENST00000447124 DOCK8Q8NF50 2099 aa22.67■■□□□ 1.22
SDC1-205ENST00000447124 TRAPPC3O43617 180 aa22.66■■□□□ 1.22
SDC1-205ENST00000447124 FAM13AO94988 1023 aa22.66■■□□□ 1.22
SDC1-205ENST00000447124 C8AP07357 584 aa22.66■■□□□ 1.22
SDC1-205ENST00000447124 CXCL8P10145 99 aa22.66■■□□□ 1.22
SDC1-205ENST00000447124 RPL9P32969 192 aaKnown RBP22.66■■□□□ 1.22
SDC1-205ENST00000447124 TNFSF9P41273 254 aa22.66■■□□□ 1.22
SDC1-205ENST00000447124 SPAG1Q07617 926 aa22.66■■□□□ 1.22
SDC1-205ENST00000447124 ZBTB41Q5SVQ8 909 aa22.66■■□□□ 1.22
SDC1-205ENST00000447124 STAMQ92783 540 aa22.66■■□□□ 1.22
SDC1-205ENST00000447124 PARVGQ9HBI0 331 aa22.66■■□□□ 1.22
SDC1-205ENST00000447124 SRPRBQ9Y5M8 271 aaKnown RBP22.66■■□□□ 1.22
SDC1-205ENST00000447124 CDY1Q9Y6F8 540 aa22.66■■□□□ 1.22
SDC1-205ENST00000447124 TTC26A0AVF1 554 aa22.65■■□□□ 1.22
SDC1-205ENST00000447124 H0YCG3 227 aa22.65■■□□□ 1.22
SDC1-205ENST00000447124 TRAK2O60296 914 aa22.65■■□□□ 1.22
SDC1-205ENST00000447124 TBC1D4O60343 1298 aa22.65■■□□□ 1.22
SDC1-205ENST00000447124 PIGRP01833 764 aa22.65■■□□□ 1.22
SDC1-205ENST00000447124 NMT1P30419 496 aaKnown RBP22.65■■□□□ 1.22
SDC1-205ENST00000447124 CEBPZQ03701 1054 aaKnown RBP22.65■■□□□ 1.22
SDC1-205ENST00000447124 MRPL58Q14197 206 aaKnown RBP22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms