RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 AMPD3Q01432 767 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 DR1Q01658 176 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 MRPL28Q13084 256 aaKnown RBP2.95□□□□□ -1.94
LIG4-203ENST00000442234 MTMR3Q13615 1198 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 UBE4AQ14139 1066 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 ITIH4Q14624 930 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 RABL6Q3YEC7 729 aaPredicted RBP2.95□□□□□ -1.94
LIG4-203ENST00000442234 SNX30Q5VWJ9 437 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 ZNF449Q6P9G9 518 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 CLEC4GQ6UXB4 293 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 RAD9BQ6WBX8 426 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 B3GNT6Q6ZMB0 384 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 CCDC81Q6ZN84 652 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 ZNF804AQ7Z570 1209 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 NLRP10Q86W26 655 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 FAM20CQ8IXL6 584 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 VPS52Q8N1B4 723 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 TC2NQ8N9U0 490 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 MAFAQ8NHW3 353 aaPredicted RBP2.95□□□□□ -1.94
LIG4-203ENST00000442234 AENQ8WTP8 325 aaKnown RBP2.95□□□□□ -1.94
LIG4-203ENST00000442234 TRIM47Q96LD4 638 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 HEPHQ9BQS7 1158 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 HAUS8Q9BT25 410 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 KLHL25Q9H0H3 589 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 EHMT1Q9H9B1 1298 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 METTL5Q9NRN9 209 aaKnown RBP2.95□□□□□ -1.94
LIG4-203ENST00000442234 PLSCR2Q9NRY7 297 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 TBCCD1Q9NVR7 557 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 POLR3EQ9NVU0 708 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 TRNAU1APQ9NX07 287 aaKnown RBP2.95□□□□□ -1.94
LIG4-203ENST00000442234 CYP39A1Q9NYL5 469 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 PLA2G2EQ9NZK7 142 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 IL1RAPL1Q9NZN1 696 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 DMGDHQ9UI17 866 aaKnown RBP2.95□□□□□ -1.94
LIG4-203ENST00000442234 PA2G4Q9UQ80 394 aaKnown RBP2.95□□□□□ -1.94
LIG4-203ENST00000442234 SPEF1Q9Y4P9 236 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 TTLL3Q9Y4R7 772 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 V9GY48 417 aaPredicted RBP2.95□□□□□ -1.94
LIG4-203ENST00000442234 MAP3K15Q6ZN16 1313 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 CPDO75976 1380 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 NSD2O96028 1365 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 IGF2RP11717 2491 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 XIRP2A4UGR9 3374 aa2.95□□□□□ -1.94
LIG4-203ENST00000442234 ZSCAN5BA6NJL1 495 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 MINDY4BA8MYZ0 360 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 RASA4BC9J798 803 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 H3BQ06 376 aaPredicted RBP2.94□□□□□ -1.94
LIG4-203ENST00000442234 NDC80O14777 642 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 IFIT3O14879 490 aaKnown RBP2.94□□□□□ -1.94
LIG4-203ENST00000442234 RASA4O43374 803 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 TSPAN1O60635 241 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 CNOT3O75175 753 aaKnown RBP2.94□□□□□ -1.94
LIG4-203ENST00000442234 DCTN3O75935 186 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 FBXO21O94952 628 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 C6orf222P0C671 652 aaPredicted RBP2.94□□□□□ -1.94
LIG4-203ENST00000442234 RRM1P23921 792 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 ANXA13P27216 316 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 MZF1P28698 734 aaPredicted RBP2.94□□□□□ -1.94
LIG4-203ENST00000442234 CASP14P31944 242 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 CYLC1P35663 651 aaPredicted RBP2.94□□□□□ -1.94
LIG4-203ENST00000442234 FXR1P51114 621 aaKnown RBP eCLIP2.94□□□□□ -1.94
LIG4-203ENST00000442234 NCALDP61601 193 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 POU5F1Q01860 360 aaKnown RBP2.94□□□□□ -1.94
LIG4-203ENST00000442234 PTK2Q05397 1052 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 BTKQ06187 659 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 STK11Q15831 433 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 TMCO2Q7Z6W1 182 aaPredicted RBP2.94□□□□□ -1.94
LIG4-203ENST00000442234 MCF2L2Q86YR7 1114 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP2.94□□□□□ -1.94
LIG4-203ENST00000442234 TRMT44Q8IYL2 757 aaKnown RBP2.94□□□□□ -1.94
LIG4-203ENST00000442234 TRIML2Q8N7C3 387 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 TOR1AIP2Q8NFQ8 470 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 SCG3Q8WXD2 468 aaKnown RBP2.94□□□□□ -1.94
LIG4-203ENST00000442234 ERLEC1Q96DZ1 483 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 VPS50Q96JG6 964 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 PPP1R16BQ96T49 567 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 CGREF1Q99674 301 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 MRPL9Q9BYD2 267 aaKnown RBP2.94□□□□□ -1.94
LIG4-203ENST00000442234 SLC28A3Q9HAS3 691 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 XAB2Q9HCS7 855 aaKnown RBP2.94□□□□□ -1.94
LIG4-203ENST00000442234 CCDC177Q9NQR7 707 aaPredicted RBP2.94□□□□□ -1.94
LIG4-203ENST00000442234 C8orf4Q9NR00 106 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 NMRK1Q9NWW6 199 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 DDX56Q9NY93 547 aaKnown RBP2.94□□□□□ -1.94
LIG4-203ENST00000442234 MAP3K20Q9NYL2 800 aaKnown RBP2.94□□□□□ -1.94
LIG4-203ENST00000442234 PKD2L1Q9P0L9 805 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 STK39Q9UEW8 545 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 TBK1Q9UHD2 729 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 GIT1Q9Y2X7 761 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 LRRC42Q9Y546 428 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 TIMM22Q9Y584 194 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 PCDHGA3Q9Y5H0 932 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 FAM208BQ5VWN6 2430 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 OTOGLQ3ZCN5 2332 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 ZNF804BA4D1E1 1349 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 CNTNAP4Q9C0A0 1308 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 NPHP3-ACAD11A0A0J9YXS1 232 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 CFAP69A5D8W1 941 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 POM121CA8CG34 1229 aa2.94□□□□□ -1.94
LIG4-203ENST00000442234 TNFRSF10AO00220 468 aa2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms