RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 REPS2Q8NFH8 660 aa4.53□□□□□ -1.68
VPS41-207ENST00000439468 MDM1Q8TC05 714 aa4.53□□□□□ -1.68
VPS41-207ENST00000439468 DIS3LQ8TF46 1054 aaKnown RBP4.53□□□□□ -1.68
VPS41-207ENST00000439468 SNX33Q8WV41 574 aa4.53□□□□□ -1.68
VPS41-207ENST00000439468 STON2Q8WXE9 905 aa4.53□□□□□ -1.68
VPS41-207ENST00000439468 RUNDC1Q96C34 613 aa4.53□□□□□ -1.68
VPS41-207ENST00000439468 AIFM3Q96NN9 605 aa4.53□□□□□ -1.68
VPS41-207ENST00000439468 RBM12Q9NTZ6 932 aaKnown RBP4.53□□□□□ -1.68
VPS41-207ENST00000439468 PCDHB1Q9Y5F3 818 aa4.53□□□□□ -1.68
VPS41-207ENST00000439468 RPTORQ8N122 1335 aa4.52□□□□□ -1.69
VPS41-207ENST00000439468 GOLGA6CA6NDK9 693 aa4.52□□□□□ -1.69
VPS41-207ENST00000439468 GOLGA6BA6NDN3 693 aa4.52□□□□□ -1.69
VPS41-207ENST00000439468 LRRC14BA6NHZ5 514 aa4.52□□□□□ -1.69
VPS41-207ENST00000439468 ITGA10O75578 1167 aa4.52□□□□□ -1.69
VPS41-207ENST00000439468 PEX11BO96011 259 aa4.52□□□□□ -1.69
VPS41-207ENST00000439468 GOLGA6DP0CG33 693 aa4.52□□□□□ -1.69
VPS41-207ENST00000439468 VCAM1P19320 739 aa4.52□□□□□ -1.69
VPS41-207ENST00000439468 MEF2AQ02078 507 aaPredicted RBP4.52□□□□□ -1.69
VPS41-207ENST00000439468 APBA1Q02410 837 aa4.52□□□□□ -1.69
VPS41-207ENST00000439468 C1QL3Q5VWW1 255 aa4.52□□□□□ -1.69
VPS41-207ENST00000439468 KSR2Q6VAB6 950 aa4.52□□□□□ -1.69
VPS41-207ENST00000439468 CCDC146Q8IYE0 955 aa4.52□□□□□ -1.69
VPS41-207ENST00000439468 CCHCR1Q8TD31 782 aa4.52□□□□□ -1.69
VPS41-207ENST00000439468 MVB12AQ96EY5 273 aa4.52□□□□□ -1.69
VPS41-207ENST00000439468 CPEB1Q9BZB8 566 aaKnown RBP4.52□□□□□ -1.69
VPS41-207ENST00000439468 ENKD1Q9H0I2 346 aa4.52□□□□□ -1.69
VPS41-207ENST00000439468 NMRK2Q9NPI5 230 aa4.52□□□□□ -1.69
VPS41-207ENST00000439468 CHST12Q9NRB3 414 aa4.52□□□□□ -1.69
VPS41-207ENST00000439468 GEMIN8Q9NWZ8 242 aaKnown RBP4.52□□□□□ -1.69
VPS41-207ENST00000439468 GOLGA6AQ9NYA3 693 aa4.52□□□□□ -1.69
VPS41-207ENST00000439468 FRMPD2Q68DX3 1309 aaPredicted RBP4.51□□□□□ -1.69
VPS41-207ENST00000439468 WDR33Q9C0J8 1336 aaKnown RBP4.51□□□□□ -1.69
VPS41-207ENST00000439468 APOBEC3AP31941 199 aaPredicted RBP4.51□□□□□ -1.69
VPS41-207ENST00000439468 FSTL1Q12841 308 aa4.51□□□□□ -1.69
VPS41-207ENST00000439468 VPS72Q15906 364 aa4.51□□□□□ -1.69
VPS41-207ENST00000439468 PGS1Q32NB8 556 aa4.51□□□□□ -1.69
VPS41-207ENST00000439468 CRB2Q5IJ48 1285 aa4.51□□□□□ -1.69
VPS41-207ENST00000439468 PDZD4Q76G19 769 aaPredicted RBP4.51□□□□□ -1.69
VPS41-207ENST00000439468 OVCH2Q7RTZ1 564 aa4.51□□□□□ -1.69
VPS41-207ENST00000439468 DGKHQ86XP1 1220 aa4.51□□□□□ -1.69
VPS41-207ENST00000439468 ZGPATQ8N5A5 531 aaKnown RBP4.51□□□□□ -1.69
VPS41-207ENST00000439468 ZNF480Q8WV37 535 aa4.51□□□□□ -1.69
VPS41-207ENST00000439468 LARP4BQ92615 738 aaKnown RBP4.51□□□□□ -1.69
VPS41-207ENST00000439468 HOXB13Q92826 284 aaPredicted RBP4.51□□□□□ -1.69
VPS41-207ENST00000439468 HAS1Q92839 578 aa4.51□□□□□ -1.69
VPS41-207ENST00000439468 HDAC10Q969S8 669 aa4.51□□□□□ -1.69
VPS41-207ENST00000439468 CHFRQ96EP1 664 aa4.51□□□□□ -1.69
VPS41-207ENST00000439468 DMRTA2Q96SC8 542 aa4.51□□□□□ -1.69
VPS41-207ENST00000439468 MAP3K14Q99558 947 aa4.51□□□□□ -1.69
VPS41-207ENST00000439468 LSM14BQ9BX40 385 aaKnown RBP4.51□□□□□ -1.69
VPS41-207ENST00000439468 SLITRK6Q9H5Y7 841 aa4.51□□□□□ -1.69
VPS41-207ENST00000439468 GPRC5DQ9NZD1 345 aa4.51□□□□□ -1.69
VPS41-207ENST00000439468 TRPM5Q9NZQ8 1165 aa4.51□□□□□ -1.69
VPS41-207ENST00000439468 POGKQ9P215 609 aa4.51□□□□□ -1.69
VPS41-207ENST00000439468 ZMYM3Q14202 1370 aa4.51□□□□□ -1.69
VPS41-207ENST00000439468 CCDC194A0A1B0GVG4 234 aa4.5□□□□□ -1.69
VPS41-207ENST00000439468 AMY1AP04745 511 aa4.5□□□□□ -1.69
VPS41-207ENST00000439468 FPR1P21462 350 aa4.5□□□□□ -1.69
VPS41-207ENST00000439468 PTPN7P35236 360 aa4.5□□□□□ -1.69
VPS41-207ENST00000439468 SREBF1P36956 1147 aa4.5□□□□□ -1.69
VPS41-207ENST00000439468 WASP42768 502 aa4.5□□□□□ -1.69
VPS41-207ENST00000439468 USP14P54578 494 aa4.5□□□□□ -1.69
VPS41-207ENST00000439468 INHBCP55103 352 aa4.5□□□□□ -1.69
VPS41-207ENST00000439468 PER3P56645 1201 aa4.5□□□□□ -1.69
VPS41-207ENST00000439468 MGAT2Q10469 447 aa4.5□□□□□ -1.69
VPS41-207ENST00000439468 TARDBPQ13148 414 aaKnown RBP eCLIP4.5□□□□□ -1.69
VPS41-207ENST00000439468 NAIF1Q69YI7 327 aaPredicted RBP4.5□□□□□ -1.69
VPS41-207ENST00000439468 KCNV1Q6PIU1 500 aa4.5□□□□□ -1.69
VPS41-207ENST00000439468 HTR3DQ70Z44 454 aa4.5□□□□□ -1.69
VPS41-207ENST00000439468 DOK3Q7L591 496 aa4.5□□□□□ -1.69
VPS41-207ENST00000439468 CAMKK1Q8N5S9 505 aa4.5□□□□□ -1.69
VPS41-207ENST00000439468 RNF169Q8NCN4 708 aa4.5□□□□□ -1.69
VPS41-207ENST00000439468 OR52N2Q8NGI0 321 aa4.5□□□□□ -1.69
VPS41-207ENST00000439468 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.5□□□□□ -1.69
VPS41-207ENST00000439468 PAWRQ96IZ0 340 aaKnown RBP4.5□□□□□ -1.69
VPS41-207ENST00000439468 CCDC136Q96JN2 1154 aa4.5□□□□□ -1.69
VPS41-207ENST00000439468 UHRF1Q96T88 793 aaPredicted RBP4.5□□□□□ -1.69
VPS41-207ENST00000439468 CGRRF1Q99675 332 aa4.5□□□□□ -1.69
VPS41-207ENST00000439468 VRK1Q99986 396 aaPredicted RBP4.5□□□□□ -1.69
VPS41-207ENST00000439468 C7orf25Q9BPX7 421 aa4.5□□□□□ -1.69
VPS41-207ENST00000439468 PDCD2LQ9BRP1 358 aa4.5□□□□□ -1.69
VPS41-207ENST00000439468 LRFN3Q9BTN0 628 aa4.5□□□□□ -1.69
VPS41-207ENST00000439468 NDC1Q9BTX1 674 aa4.5□□□□□ -1.69
VPS41-207ENST00000439468 GPRC5BQ9NZH0 403 aa4.5□□□□□ -1.69
VPS41-207ENST00000439468 TRPS1Q9UHF7 1281 aa4.5□□□□□ -1.69
VPS41-207ENST00000439468 CLCA2Q9UQC9 943 aa4.5□□□□□ -1.69
VPS41-207ENST00000439468 FAM50BQ9Y247 325 aa4.5□□□□□ -1.69
VPS41-207ENST00000439468 A0A087X1B8 175 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 B5MCH6 92 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 TRIM24O15164 1050 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 PHF2O75151 1096 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 UBXN7O94888 489 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 ABHD16AO95870 558 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 U2AF1L5P0DN76 240 aaPredicted RBP4.49□□□□□ -1.69
VPS41-207ENST00000439468 MAP2K6P52564 334 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 U2AF1Q01081 240 aaKnown RBP eCLIP4.49□□□□□ -1.69
VPS41-207ENST00000439468 DPTQ07507 201 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 GBX1Q14549 363 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 MST1LQ2TV78 715 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 KHDC1Q4VXA5 237 aaKnown RBP4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms