RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 TTC39CQ8N584 583 aa18.12■□□□□ 0.49
PTPRF-209ENST00000438120 EPAS1Q99814 870 aa18.12■□□□□ 0.49
PTPRF-209ENST00000438120 DYRK4Q9NR20 520 aa18.12■□□□□ 0.49
PTPRF-209ENST00000438120 KIF17Q9P2E2 1029 aa18.12■□□□□ 0.49
PTPRF-209ENST00000438120 ZNF157P51786 506 aaPredicted RBP18.12■□□□□ 0.49
PTPRF-209ENST00000438120 ETNK1Q9HBU6 452 aa18.12■□□□□ 0.49
PTPRF-209ENST00000438120 PFASO15067 1338 aa18.12■□□□□ 0.49
PTPRF-209ENST00000438120 PYGBP11216 843 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 ZFXP17010 805 aaPredicted RBP18.11■□□□□ 0.49
PTPRF-209ENST00000438120 AP1ARQ63HQ0 302 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 AGBL1Q96MI9 1066 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 GLI2P10070 1586 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 LRRC7Q96NW7 1537 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 MCF2P10911 925 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 PDHBP11177 359 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 EPC2Q52LR7 807 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 RBBP8NLQ8NC74 664 aaPredicted RBP18.11■□□□□ 0.49
PTPRF-209ENST00000438120 CRAMP1Q96RY5 1269 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 ZCWPW1Q9H0M4 648 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 FHOD1Q9Y613 1164 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 STXBP3O00186 592 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 ASMTLO95671 621 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 PRKCEQ02156 737 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 RAD51Q06609 339 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 TRIM28Q13263 835 aaKnown RBP18.11■□□□□ 0.49
PTPRF-209ENST00000438120 KCNV1Q6PIU1 500 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 ADSSL1Q8N142 457 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 LBHD1Q9BQE6 289 aaPredicted RBP18.11■□□□□ 0.49
PTPRF-209ENST00000438120 ALKQ9UM73 1620 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 RBP5P82980 135 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 TAP1Q03518 808 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 TSGA10IPQ3SY00 556 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 SEPT5Q99719 369 aaPredicted RBP18.11■□□□□ 0.49
PTPRF-209ENST00000438120 PRMT1Q99873 361 aaKnown RBP18.11■□□□□ 0.49
PTPRF-209ENST00000438120 PI4K2AQ9BTU6 479 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 UNC45AQ9H3U1 944 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 SLC16A3O15427 465 aaKnown RBP18.11■□□□□ 0.49
PTPRF-209ENST00000438120 RASA1P20936 1047 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 ALDH18A1P54886 795 aaKnown RBP18.11■□□□□ 0.49
PTPRF-209ENST00000438120 VSNL1P62760 191 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 ZNF34Q8IZ26 560 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 SEPT1Q8WYJ6 367 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 PABPC5Q96DU9 382 aaKnown RBP18.11■□□□□ 0.49
PTPRF-209ENST00000438120 CCSER1Q9C0I3 900 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 KCNH4Q9UQ05 1017 aa18.11■□□□□ 0.49
PTPRF-209ENST00000438120 UCHL3P15374 230 aa18.1■□□□□ 0.49
PTPRF-209ENST00000438120 SLC9A1P19634 815 aa18.1■□□□□ 0.49
PTPRF-209ENST00000438120 NLRP11P59045 1033 aaKnown RBP18.1■□□□□ 0.49
PTPRF-209ENST00000438120 CUL3Q13618 768 aa18.1■□□□□ 0.49
PTPRF-209ENST00000438120 PLA2G12BQ9BX93 195 aa18.1■□□□□ 0.49
PTPRF-209ENST00000438120 CLTCL1P53675 1640 aa18.1■□□□□ 0.49
PTPRF-209ENST00000438120 WEE2P0C1S8 567 aa18.1■□□□□ 0.49
PTPRF-209ENST00000438120 AARSP49588 968 aaKnown RBP eCLIP18.1■□□□□ 0.493e-8■■■■■ 82.4
PTPRF-209ENST00000438120 PCSK7Q16549 785 aa18.1■□□□□ 0.49
PTPRF-209ENST00000438120 LRRC8EQ6NSJ5 796 aa18.1■□□□□ 0.49
PTPRF-209ENST00000438120 ATL2Q8NHH9 583 aa18.1■□□□□ 0.49
PTPRF-209ENST00000438120 STK33Q9BYT3 514 aa18.1■□□□□ 0.49
PTPRF-209ENST00000438120 SMARCAD1Q9H4L7 1026 aa18.1■□□□□ 0.49
PTPRF-209ENST00000438120 CDR2LQ86X02 465 aaPredicted RBP18.1■□□□□ 0.49
PTPRF-209ENST00000438120 GFAPP14136 432 aa18.1■□□□□ 0.49
PTPRF-209ENST00000438120 ACTN3Q08043 901 aaPredicted RBP18.1■□□□□ 0.49
PTPRF-209ENST00000438120 LONRF1Q17RB8 773 aa18.1■□□□□ 0.49
PTPRF-209ENST00000438120 CEP70Q8NHQ1 597 aa18.1■□□□□ 0.49
PTPRF-209ENST00000438120 UBA3Q8TBC4 463 aa18.1■□□□□ 0.49
PTPRF-209ENST00000438120 NR1H4Q96RI1 486 aaPredicted RBP18.1■□□□□ 0.49
PTPRF-209ENST00000438120 LAMC1P11047 1609 aa18.1■□□□□ 0.49
PTPRF-209ENST00000438120 ZSCAN9O15535 394 aaPredicted RBP18.1■□□□□ 0.49
PTPRF-209ENST00000438120 ANTXR2P58335 489 aa18.1■□□□□ 0.49
PTPRF-209ENST00000438120 DHX34Q14147 1143 aaKnown RBP18.1■□□□□ 0.49
PTPRF-209ENST00000438120 YAF2Q8IY57 180 aa18.1■□□□□ 0.49
PTPRF-209ENST00000438120 PPHLN1Q8NEY8 458 aaKnown RBP18.1■□□□□ 0.49
PTPRF-209ENST00000438120 SENP7Q9BQF6 1050 aa18.1■□□□□ 0.49
PTPRF-209ENST00000438120 TARBP1Q13395 1621 aaKnown RBP18.09■□□□□ 0.49
PTPRF-209ENST00000438120 SERPIND1P05546 499 aa18.09■□□□□ 0.49
PTPRF-209ENST00000438120 SLC18A3Q16572 532 aa18.09■□□□□ 0.49
PTPRF-209ENST00000438120 SAMD7Q7Z3H4 446 aa18.09■□□□□ 0.49
PTPRF-209ENST00000438120 TRIM54Q9BYV2 358 aa18.09■□□□□ 0.49
PTPRF-209ENST00000438120 SPATS2LQ9NUQ6 558 aaKnown RBP18.09■□□□□ 0.49
PTPRF-209ENST00000438120 TAF6LQ9Y6J9 622 aa18.09■□□□□ 0.49
PTPRF-209ENST00000438120 TET3O43151 1660 aa18.09■□□□□ 0.49
PTPRF-209ENST00000438120 ADCY10Q96PN6 1610 aa18.09■□□□□ 0.49
PTPRF-209ENST00000438120 C16orf86Q6ZW13 317 aa18.09■□□□□ 0.49
PTPRF-209ENST00000438120 RAB6BQ9NRW1 208 aa18.09■□□□□ 0.49
PTPRF-209ENST00000438120 FXR1P51114 621 aaKnown RBP eCLIP18.09■□□□□ 0.49
PTPRF-209ENST00000438120 KYAT1Q16773 422 aa18.09■□□□□ 0.49
PTPRF-209ENST00000438120 C7orf25Q9BPX7 421 aa18.09■□□□□ 0.49
PTPRF-209ENST00000438120 FAM96AQ9H5X1 160 aa18.09■□□□□ 0.49
PTPRF-209ENST00000438120 FAM167BQ9BTA0 163 aa18.09■□□□□ 0.49
PTPRF-209ENST00000438120 SOX11P35716 441 aa18.09■□□□□ 0.49
PTPRF-209ENST00000438120 SF3B3Q15393 1217 aaKnown RBP18.09■□□□□ 0.49
PTPRF-209ENST00000438120 SMTNL2Q2TAL5 461 aa18.09■□□□□ 0.49
PTPRF-209ENST00000438120 KIFC3Q9BVG8 833 aa18.09■□□□□ 0.49
PTPRF-209ENST00000438120 SNX12Q9UMY4 172 aa18.09■□□□□ 0.49
PTPRF-209ENST00000438120 GH1P01241 217 aa18.08■□□□□ 0.49
PTPRF-209ENST00000438120 LMNAP02545 664 aaKnown RBP18.08■□□□□ 0.49
PTPRF-209ENST00000438120 ACBD5Q5T8D3 534 aaPredicted RBP18.08■□□□□ 0.49
PTPRF-209ENST00000438120 RCOR2Q8IZ40 523 aa18.08■□□□□ 0.49
PTPRF-209ENST00000438120 LPAR1Q92633 364 aa18.08■□□□□ 0.49
PTPRF-209ENST00000438120 C9orf72Q96LT7 481 aa18.08■□□□□ 0.49
PTPRF-209ENST00000438120 CENPKQ9BS16 269 aa18.08■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms