RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 SMG8Q8ND04 991 aaKnown RBP13.31□□□□□ -0.28
PTPRF-208ENST00000437607 MCPH1Q8NEM0 835 aa13.31□□□□□ -0.28
PTPRF-208ENST00000437607 SPATA20Q8TB22 786 aa13.31□□□□□ -0.28
PTPRF-208ENST00000437607 SLC7A3Q8WY07 619 aa13.31□□□□□ -0.28
PTPRF-208ENST00000437607 DRC1Q96MC2 740 aa13.31□□□□□ -0.28
PTPRF-208ENST00000437607 JPH2Q9BR39 696 aaPredicted RBP13.31□□□□□ -0.28
PTPRF-208ENST00000437607 TMEM175Q9BSA9 504 aa13.31□□□□□ -0.28
PTPRF-208ENST00000437607 PATJQ8NI35 1801 aa13.31□□□□□ -0.28
PTPRF-208ENST00000437607 PRR23AA6NEV1 266 aa13.3□□□□□ -0.28
PTPRF-208ENST00000437607 PI15O43692 258 aa13.3□□□□□ -0.28
PTPRF-208ENST00000437607 POMCP01189 267 aa13.3□□□□□ -0.28
PTPRF-208ENST00000437607 SOD2P04179 222 aa13.3□□□□□ -0.28
PTPRF-208ENST00000437607 GAP43P17677 238 aa13.3□□□□□ -0.28
PTPRF-208ENST00000437607 KLRC2P26717 231 aa13.3□□□□□ -0.28
PTPRF-208ENST00000437607 CLCN5P51795 746 aa13.3□□□□□ -0.28
PTPRF-208ENST00000437607 NLRP12P59046 1061 aa13.3□□□□□ -0.28
PTPRF-208ENST00000437607 EMC2Q15006 297 aa13.3□□□□□ -0.28
PTPRF-208ENST00000437607 KMT5BQ4FZB7 885 aa13.3□□□□□ -0.28
PTPRF-208ENST00000437607 C1orf186Q6ZWK4 172 aa13.3□□□□□ -0.28
PTPRF-208ENST00000437607 RNF168Q8IYW5 571 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-208ENST00000437607 URGCPQ8TCY9 931 aa13.3□□□□□ -0.28
PTPRF-208ENST00000437607 EMILIN2Q9BXX0 1053 aa13.3□□□□□ -0.28
PTPRF-208ENST00000437607 PANK4Q9NVE7 773 aa13.3□□□□□ -0.28
PTPRF-208ENST00000437607 MIOSQ9NXC5 875 aa13.3□□□□□ -0.28
PTPRF-208ENST00000437607 FAN1Q9Y2M0 1017 aa13.3□□□□□ -0.28
PTPRF-208ENST00000437607 CNTNAP2Q9UHC6 1331 aa13.3□□□□□ -0.28
PTPRF-208ENST00000437607 NPHP3-ACAD11A0A0J9YXS1 232 aa13.29□□□□□ -0.28
PTPRF-208ENST00000437607 F8W810 466 aa13.29□□□□□ -0.28
PTPRF-208ENST00000437607 INPPL1O15357 1258 aa13.29□□□□□ -0.28
PTPRF-208ENST00000437607 GAS2O43903 313 aaKnown RBP13.29□□□□□ -0.28
PTPRF-208ENST00000437607 KLRC4O43908 158 aa13.29□□□□□ -0.28
PTPRF-208ENST00000437607 HIP1RO75146 1068 aa13.29□□□□□ -0.28
PTPRF-208ENST00000437607 RHOBTB3O94955 611 aa13.29□□□□□ -0.28
PTPRF-208ENST00000437607 ALDH2P05091 517 aa13.29□□□□□ -0.28
PTPRF-208ENST00000437607 TDGQ13569 410 aa13.29□□□□□ -0.28
PTPRF-208ENST00000437607 STIM1Q13586 685 aa13.29□□□□□ -0.28
PTPRF-208ENST00000437607 MORC3Q14149 939 aa13.29□□□□□ -0.28
PTPRF-208ENST00000437607 DPCR1Q3MIW9 517 aa13.29□□□□□ -0.28
PTPRF-208ENST00000437607 FAM26FQ5R3K3 315 aa13.29□□□□□ -0.28
PTPRF-208ENST00000437607 CCDC149Q6ZUS6 474 aa13.29□□□□□ -0.28
PTPRF-208ENST00000437607 EXOC8Q8IYI6 725 aa13.29□□□□□ -0.28
PTPRF-208ENST00000437607 COLGALT2Q8IYK4 626 aa13.29□□□□□ -0.28
PTPRF-208ENST00000437607 PSPC1Q8WXF1 523 aaKnown RBP13.29□□□□□ -0.28
PTPRF-208ENST00000437607 ACSF2Q96CM8 615 aaPredicted RBP13.29□□□□□ -0.28
PTPRF-208ENST00000437607 DNAJC19Q96DA6 116 aa13.29□□□□□ -0.28
PTPRF-208ENST00000437607 FUCA2Q9BTY2 467 aa13.29□□□□□ -0.28
PTPRF-208ENST00000437607 HERC2P3Q9BVR0 1158 aa13.29□□□□□ -0.28
PTPRF-208ENST00000437607 EIF2AQ9BY44 585 aaKnown RBP13.29□□□□□ -0.28
PTPRF-208ENST00000437607 NAT10Q9H0A0 1025 aaKnown RBP13.29□□□□□ -0.28
PTPRF-208ENST00000437607 RNF39Q9H2S5 420 aa13.29□□□□□ -0.28
PTPRF-208ENST00000437607 KCNK12Q9HB15 430 aa13.29□□□□□ -0.28
PTPRF-208ENST00000437607 PARVGQ9HBI0 331 aa13.29□□□□□ -0.28
PTPRF-208ENST00000437607 XPNPEP1Q9NQW7 623 aa13.29□□□□□ -0.28
PTPRF-208ENST00000437607 MAN1C1Q9NR34 630 aa13.29□□□□□ -0.28
PTPRF-208ENST00000437607 MRPL17Q9NRX2 175 aaKnown RBP13.29□□□□□ -0.28
PTPRF-208ENST00000437607 SEL1LQ9UBV2 794 aa13.29□□□□□ -0.28
PTPRF-208ENST00000437607 DUSP12Q9UNI6 340 aa13.29□□□□□ -0.28
PTPRF-208ENST00000437607 COL4A3Q01955 1670 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 CACNA1AO00555 2505 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 FRMD3A2A2Y4 597 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 C2CD2LO14523 706 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 TEX28O15482 410 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 NARSO43776 548 aaKnown RBP13.28□□□□□ -0.28
PTPRF-208ENST00000437607 TSPAN1O60635 241 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 CAVIN2O95810 425 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 AOC1P19801 751 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 PPP1R2P41236 205 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 DSC1Q08554 894 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 ANO6Q4KMQ2 910 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 ARSHQ5FYA8 562 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 ZNF658Q5TYW1 1059 aaPredicted RBP13.28□□□□□ -0.28
PTPRF-208ENST00000437607 KIAA0319Q5VV43 1072 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 ISM2Q6H9L7 571 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 C15orf39Q6ZRI6 1047 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 MAEAQ7L5Y9 396 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 OTOP3Q7RTS5 596 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 FRMD5Q7Z6J6 570 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 SFR1Q86XK3 245 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 RNF149Q8NC42 400 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 FLCNQ8NFG4 579 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 CMASQ8NFW8 434 aaPredicted RBP13.28□□□□□ -0.28
PTPRF-208ENST00000437607 KIFAP3Q92845 792 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 FAM193BQ96PV7 902 aaPredicted RBP13.28□□□□□ -0.28
PTPRF-208ENST00000437607 RPS6KC1Q96S38 1066 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 DNAJC25Q9H1X3 360 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 MFSD1Q9H3U5 465 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 KANSL3Q9P2N6 904 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 STK39Q9UEW8 545 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 PRG3Q9Y2Y8 225 aaPredicted RBP13.28□□□□□ -0.28
PTPRF-208ENST00000437607 HES2Q9Y543 173 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 IPPQ9Y573 584 aa13.28□□□□□ -0.28
PTPRF-208ENST00000437607 EP300Q09472 2414 aaPredicted RBP13.28□□□□□ -0.28
PTPRF-208ENST00000437607 PDCD11Q14690 1871 aaKnown RBP13.27□□□□□ -0.28
PTPRF-208ENST00000437607 CITO14578 2027 aa13.27□□□□□ -0.28
PTPRF-208ENST00000437607 CCDC195A0A1B0GUA6 201 aa13.27□□□□□ -0.29
PTPRF-208ENST00000437607 ARL5CA6NH57 179 aa13.27□□□□□ -0.29
PTPRF-208ENST00000437607 ASAP2O43150 1006 aa13.27□□□□□ -0.29
PTPRF-208ENST00000437607 KIF20AO95235 890 aa13.27□□□□□ -0.29
PTPRF-208ENST00000437607 PAPLNO95428 1278 aa13.27□□□□□ -0.29
PTPRF-208ENST00000437607 MYBP10242 640 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms