RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 TOR1AIP2Q8NFQ8 470 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 ANKRD49Q8WVL7 239 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 PARVGQ9HBI0 331 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 STMN1P16949 149 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 MAGEA4P43358 317 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 CALCOCO2Q13137 446 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 PLEKHA7Q6IQ23 1121 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 RABGEF1Q9UJ41 708 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 RNASEH1O60930 286 aaKnown RBP3.6□□□□□ -1.83
SYNE1-212ENST00000423061 ANPEPP15144 967 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 ALDH18A1P54886 795 aaKnown RBP3.6□□□□□ -1.83
SYNE1-212ENST00000423061 CCDC58Q4VC31 144 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 FASTKD5Q7L8L6 764 aaKnown RBP3.6□□□□□ -1.83
SYNE1-212ENST00000423061 LRRC20Q8TCA0 184 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 LRGUKQ96M69 825 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 HOMER2Q9NSB8 354 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 FETUBQ9UGM5 382 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 APPL1Q9UKG1 709 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 C12orf71A8MTZ7 269 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 A8MV72 311 aaPredicted RBP3.6□□□□□ -1.83
SYNE1-212ENST00000423061 TIGD2Q4W5G0 525 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 PAPD7Q5XG87 772 aaKnown RBP3.6□□□□□ -1.83
SYNE1-212ENST00000423061 EPM2AIP1Q7L775 607 aaPredicted RBP3.6□□□□□ -1.83
SYNE1-212ENST00000423061 AK5Q9Y6K8 562 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 CD109Q6YHK3 1445 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 TYW5A2RUC4 315 aaKnown RBP3.6□□□□□ -1.83
SYNE1-212ENST00000423061 CALML3P27482 149 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 ADSLP30566 484 aaPredicted RBP3.6□□□□□ -1.83
SYNE1-212ENST00000423061 AP3M2P53677 418 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 FAM69CQ0P6D2 419 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 CRY1Q16526 586 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 C8orf37Q96NL8 207 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 REXO4Q9GZR2 422 aaKnown RBP3.6□□□□□ -1.83
SYNE1-212ENST00000423061 PKD2L2Q9NZM6 624 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 INPP5FQ9Y2H2 1132 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 GUCY1B2O75343 617 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 FGFR4P22455 802 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 PRAMEP78395 509 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 TMED2Q15363 201 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 LETM2Q2VYF4 491 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 TCP11X2Q5H9J9 407 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 GALNT18Q6P9A2 607 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 NUP93Q8N1F7 819 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 ADCY9O60503 1353 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 H0YC42 278 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 FOSL2P15408 326 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 CCT8P50990 548 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 TPD52P55327 224 aaPredicted RBP3.6□□□□□ -1.83
SYNE1-212ENST00000423061 C21orf62-AS1Q17RA5 79 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 SLX1AQ9BQ83 275 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 SBDSQ9Y3A5 250 aaKnown RBP eCLIP3.6□□□□□ -1.83
SYNE1-212ENST00000423061 IQSEC2Q5JU85 1478 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 DNAAF5Q86Y56 855 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 POMGNT1Q8WZA1 660 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 DDX3XO00571 662 aaKnown RBP eCLIP3.6□□□□□ -1.83
SYNE1-212ENST00000423061 LONRF1Q17RB8 773 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 TTI2Q6NXR4 508 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 XKR5Q6UX68 686 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 LRRC6Q86X45 466 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 CHID1Q9BWS9 393 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 STAP2Q9UGK3 403 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 SEPT3Q9UH03 358 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 CAB39Q9Y376 341 aaPredicted RBP3.6□□□□□ -1.83
SYNE1-212ENST00000423061 NR1H2P55055 460 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 IFIT5Q13325 482 aaKnown RBP3.6□□□□□ -1.83
SYNE1-212ENST00000423061 EXOC3L1Q86VI1 746 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 LSM14BQ9BX40 385 aaKnown RBP3.6□□□□□ -1.83
SYNE1-212ENST00000423061 LRMDAQ9H2I8 198 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 GDF3Q9NR23 364 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 ASIC3Q9UHC3 531 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 PTPN22Q9Y2R2 807 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 PCDHGA8Q9Y5G5 932 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 MT-ND3P03897 115 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 PIK3CAP42336 1068 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 POLGP54098 1239 aaPredicted RBP3.6□□□□□ -1.83
SYNE1-212ENST00000423061 ERVK-9P63128 1117 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 MSLNQ13421 630 aaPredicted RBP3.6□□□□□ -1.83
SYNE1-212ENST00000423061 CYGBQ8WWM9 190 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 EME1Q96AY2 570 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 DEPDC7Q96QD5 511 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 CYP4F11Q9HBI6 524 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 SMIM31A0A1B0GVY4 71 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 RPN1P04843 607 aaKnown RBP3.6□□□□□ -1.83
SYNE1-212ENST00000423061 SRGAP2CP0DJJ0 459 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 SRGAP2BP0DMP2 458 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 IFI30P13284 250 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 TRAF2Q12933 501 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 RASA2Q15283 850 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 NXNQ6DKJ4 435 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 NOC4LQ9BVI4 516 aaKnown RBP3.6□□□□□ -1.83
SYNE1-212ENST00000423061 ZNF717Q9BY31 904 aaPredicted RBP3.6□□□□□ -1.83
SYNE1-212ENST00000423061 ADD3Q9UEY8 706 aaKnown RBP3.6□□□□□ -1.83
SYNE1-212ENST00000423061 TTLL3Q9Y4R7 772 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 ZNF12P17014 697 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 ETV3P41162 512 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 ENTPD1P49961 510 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 SEMA3AQ14563 771 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 ZYXQ15942 572 aaKnown RBP3.6□□□□□ -1.83
SYNE1-212ENST00000423061 ERMARDQ5T6L9 678 aa3.6□□□□□ -1.83
SYNE1-212ENST00000423061 NLRP10Q86W26 655 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms