RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 CYP2W1Q8TAV3 490 aa11.75□□□□□ -0.53
LIMS1-207ENST00000422797 NSMCE1Q8WV22 266 aa11.75□□□□□ -0.53
LIMS1-207ENST00000422797 MXRA8Q9BRK3 442 aa11.75□□□□□ -0.53
LIMS1-207ENST00000422797 DCLK3Q9C098 648 aa11.75□□□□□ -0.53
LIMS1-207ENST00000422797 PHACTR1Q9C0D0 580 aa11.75□□□□□ -0.53
LIMS1-207ENST00000422797 TMEM117Q9H0C3 514 aa11.75□□□□□ -0.53
LIMS1-207ENST00000422797 KCNK9Q9NPC2 374 aa11.75□□□□□ -0.53
LIMS1-207ENST00000422797 AAASQ9NRG9 546 aa11.75□□□□□ -0.53
LIMS1-207ENST00000422797 CD2APQ9Y5K6 639 aa11.75□□□□□ -0.53
LIMS1-207ENST00000422797 UBR3Q6ZT12 1888 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 FAM47DPA6NHR8 397 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 ANKRD63C9JTQ0 380 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 KIF3CO14782 793 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 CLDN3O15551 220 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 PRPF4O43172 522 aaKnown RBP eCLIP11.74□□□□□ -0.53
LIMS1-207ENST00000422797 UNC5CO95185 931 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 ACSL3O95573 720 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 CFBP00751 764 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 LMNAP02545 664 aaKnown RBP11.74□□□□□ -0.53
LIMS1-207ENST00000422797 DLATP10515 647 aaKnown RBP11.74□□□□□ -0.53
LIMS1-207ENST00000422797 ATP2A2P16615 1042 aaKnown RBP11.74□□□□□ -0.53
LIMS1-207ENST00000422797 ITGA8P53708 1063 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 NCKAP1LP55160 1127 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 RNASELQ05823 741 aaKnown RBP11.74□□□□□ -0.53
LIMS1-207ENST00000422797 MKRN4PQ13434 485 aaPredicted RBP11.74□□□□□ -0.53
LIMS1-207ENST00000422797 CCDC38Q502W7 563 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 SLC27A3Q5K4L6 730 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 C1orf220Q5T0J3 134 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 LIN9Q5TKA1 542 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 AADACL2Q6P093 401 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 CCDC174Q6PII3 467 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 SLC51AQ86UW1 340 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 PPM1KQ8N3J5 372 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 FBXL13Q8NEE6 735 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 ZNF398Q8TD17 642 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 AGAP11Q8TF27 550 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 TBC1D31Q96DN5 1066 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 STAMBPL1Q96FJ0 436 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 VCPIP1Q96JH7 1222 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 LRMDAQ9H2I8 198 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 C17orf75Q9HAS0 396 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 SSU72Q9NP77 194 aaKnown RBP11.74□□□□□ -0.53
LIMS1-207ENST00000422797 NINJ2Q9NZG7 142 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 FAM198AQ9UFP1 575 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 AGAP1Q9UPQ3 857 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 USH1CQ9Y6N9 552 aa11.74□□□□□ -0.53
LIMS1-207ENST00000422797 DDTLA6NHG4 134 aaPredicted RBP11.73□□□□□ -0.53
LIMS1-207ENST00000422797 H0YCG3 227 aa11.73□□□□□ -0.53
LIMS1-207ENST00000422797 POLRMTO00411 1230 aaKnown RBP11.73□□□□□ -0.53
LIMS1-207ENST00000422797 CLGNO14967 610 aa11.73□□□□□ -0.53
LIMS1-207ENST00000422797 CYP26A1O43174 497 aa11.73□□□□□ -0.53
LIMS1-207ENST00000422797 CHRM1P11229 460 aaPredicted RBP11.73□□□□□ -0.53
LIMS1-207ENST00000422797 IVDP26440 423 aa11.73□□□□□ -0.53
LIMS1-207ENST00000422797 ADCY8P40145 1251 aa11.73□□□□□ -0.53
LIMS1-207ENST00000422797 POLGP54098 1239 aaPredicted RBP11.73□□□□□ -0.53
LIMS1-207ENST00000422797 YARSP54577 528 aaKnown RBP11.73□□□□□ -0.53
LIMS1-207ENST00000422797 IRX1P78414 480 aaPredicted RBP11.73□□□□□ -0.53
LIMS1-207ENST00000422797 SPARCL1Q14515 664 aa11.73□□□□□ -0.53
LIMS1-207ENST00000422797 DRICH1Q6PGQ1 229 aaPredicted RBP11.73□□□□□ -0.53
LIMS1-207ENST00000422797 HAUS6Q7Z4H7 955 aa11.73□□□□□ -0.53
LIMS1-207ENST00000422797 RHOT1Q8IXI2 618 aa11.73□□□□□ -0.53
LIMS1-207ENST00000422797 KATNAL2Q8IYT4 538 aa11.73□□□□□ -0.53
LIMS1-207ENST00000422797 ZCCHC9Q8N567 271 aaKnown RBP11.73□□□□□ -0.53
LIMS1-207ENST00000422797 ANKRD42Q8N9B4 389 aa11.73□□□□□ -0.53
LIMS1-207ENST00000422797 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.73□□□□□ -0.53
LIMS1-207ENST00000422797 FAM212AQ96EL1 285 aa11.73□□□□□ -0.53
LIMS1-207ENST00000422797 KREMEN1Q96MU8 473 aa11.73□□□□□ -0.53
LIMS1-207ENST00000422797 TUBB6Q9BUF5 446 aa11.73□□□□□ -0.53
LIMS1-207ENST00000422797 DDX23Q9BUQ8 820 aaKnown RBP11.73□□□□□ -0.53
LIMS1-207ENST00000422797 MRPL47Q9HD33 250 aaKnown RBP11.73□□□□□ -0.53
LIMS1-207ENST00000422797 ANKEF1Q9NU02 776 aa11.73□□□□□ -0.53
LIMS1-207ENST00000422797 MAP3K20Q9NYL2 800 aaKnown RBP11.73□□□□□ -0.53
LIMS1-207ENST00000422797 FETUBQ9UGM5 382 aa11.73□□□□□ -0.53
LIMS1-207ENST00000422797 KCNG1Q9UIX4 513 aa11.73□□□□□ -0.53
LIMS1-207ENST00000422797 ANAPC7Q9UJX3 599 aa11.73□□□□□ -0.53
LIMS1-207ENST00000422797 TMX2Q9Y320 296 aa11.73□□□□□ -0.53
LIMS1-207ENST00000422797 SCINQ9Y6U3 715 aa11.73□□□□□ -0.53
LIMS1-207ENST00000422797 NRXN2Q9P2S2 1712 aa11.72□□□□□ -0.53
LIMS1-207ENST00000422797 PROSCO94903 275 aa11.72□□□□□ -0.53
LIMS1-207ENST00000422797 POLD1P28340 1107 aa11.72□□□□□ -0.53
LIMS1-207ENST00000422797 QARSP47897 775 aaKnown RBP11.72□□□□□ -0.53
LIMS1-207ENST00000422797 KCNJ2P63252 427 aa11.72□□□□□ -0.53
LIMS1-207ENST00000422797 DLG4P78352 724 aa11.72□□□□□ -0.53
LIMS1-207ENST00000422797 GHRHRQ02643 423 aa11.72□□□□□ -0.53
LIMS1-207ENST00000422797 SNRNP35Q16560 246 aaKnown RBP11.72□□□□□ -0.53
LIMS1-207ENST00000422797 WASHC2DQ5SRD0 308 aa11.72□□□□□ -0.53
LIMS1-207ENST00000422797 ZNF746Q6NUN9 644 aaPredicted RBP11.72□□□□□ -0.53
LIMS1-207ENST00000422797 MAP4K3Q8IVH8 894 aa11.72□□□□□ -0.53
LIMS1-207ENST00000422797 KSR1Q8IVT5 923 aa11.72□□□□□ -0.53
LIMS1-207ENST00000422797 RDH13Q8NBN7 331 aa11.72□□□□□ -0.53
LIMS1-207ENST00000422797 RDM1Q8NG50 284 aa11.72□□□□□ -0.53
LIMS1-207ENST00000422797 EXD1Q8NHP7 514 aa11.72□□□□□ -0.53
LIMS1-207ENST00000422797 UHMK1Q8TAS1 419 aaKnown RBP11.72□□□□□ -0.53
LIMS1-207ENST00000422797 MGARPQ8TDB4 240 aa11.72□□□□□ -0.53
LIMS1-207ENST00000422797 HELQQ8TDG4 1101 aa11.72□□□□□ -0.53
LIMS1-207ENST00000422797 CBWD1Q9BRT8 395 aa11.72□□□□□ -0.53
LIMS1-207ENST00000422797 PITPNM3Q9BZ71 974 aa11.72□□□□□ -0.53
LIMS1-207ENST00000422797 KIAA1586Q9HCI6 787 aa11.72□□□□□ -0.53
LIMS1-207ENST00000422797 TBC1D22BQ9NU19 505 aa11.72□□□□□ -0.53
LIMS1-207ENST00000422797 EURLQ9NYK6 297 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms