RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 RPS6KA5O75582 802 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 VNN1O95497 513 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 HLA-DRAP01903 254 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 NFICP08651 508 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 TMEM191BP0C7N4 346 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 GHRP10912 638 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 CTCFP49711 727 aaPredicted RBP7.18□□□□□ -1.26
VPS41-204ENST00000413141 MNX1P50219 401 aaPredicted RBP7.18□□□□□ -1.26
VPS41-204ENST00000413141 CDK7P50613 346 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 LBX1P52954 281 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 BIRC3Q13489 604 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 LPIN1Q14693 890 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 MTF1Q14872 753 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 PKN2Q16513 984 aaKnown RBP7.18□□□□□ -1.26
VPS41-204ENST00000413141 TSR1Q2NL82 804 aaKnown RBP7.18□□□□□ -1.26
VPS41-204ENST00000413141 SLC10A6Q3KNW5 377 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 FBXO47Q5MNV8 452 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 ZNF618Q5T7W0 954 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 SFMBT2Q5VUG0 894 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 JADE1Q6IE81 842 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 TRAF7Q6Q0C0 670 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 TOGARAM2Q6ZUX3 1019 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 TMTC1Q8IUR5 882 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 GPIHBP1Q8IV16 184 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 FAM126BQ8IXS8 530 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 C17orf53Q8N3J3 647 aaPredicted RBP7.18□□□□□ -1.26
VPS41-204ENST00000413141 HELQQ8TDG4 1101 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 U2AF1L4Q8WU68 220 aaKnown RBP7.18□□□□□ -1.26
VPS41-204ENST00000413141 FAM212AQ96EL1 285 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 SNX27Q96L92 541 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 NT5C1BQ96P26 610 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 ACAP3Q96P50 834 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 SPAG5Q96R06 1193 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 STK33Q9BYT3 514 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 TRIM6Q9C030 488 aaPredicted RBP7.18□□□□□ -1.26
VPS41-204ENST00000413141 GPR88Q9GZN0 384 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 ASB7Q9H672 318 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 AGO3Q9H9G7 860 aaKnown RBP7.18□□□□□ -1.26
VPS41-204ENST00000413141 ERVK-5Q9HDB9 667 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 C1orf112Q9NSG2 853 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 ZNHIT6Q9NWK9 470 aaKnown RBP7.18□□□□□ -1.26
VPS41-204ENST00000413141 DNAJC12Q9UKB3 198 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 ST3GAL5Q9UNP4 418 aa7.18□□□□□ -1.26
VPS41-204ENST00000413141 PDCD11Q14690 1871 aaKnown RBP7.17□□□□□ -1.26
VPS41-204ENST00000413141 GPR182O15218 404 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 ZNF500O60304 480 aaPredicted RBP7.17□□□□□ -1.26
VPS41-204ENST00000413141 RECQL4O94761 1208 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 SGPL1O95470 568 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 CD4P01730 458 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 TNNC2P02585 160 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 PLEKP08567 350 aaPredicted RBP7.17□□□□□ -1.26
VPS41-204ENST00000413141 PNMA6AP0CW24 399 aaPredicted RBP7.17□□□□□ -1.26
VPS41-204ENST00000413141 CKBP12277 381 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 CD52P31358 61 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 SOX5P35711 763 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 YARSP54577 528 aaKnown RBP7.17□□□□□ -1.26
VPS41-204ENST00000413141 TFAMQ00059 246 aaKnown RBP7.17□□□□□ -1.26
VPS41-204ENST00000413141 GCNT1Q02742 428 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 PAK2Q13177 524 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 NCOA4Q13772 614 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 MBTPS1Q14703 1052 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 DRAP1Q14919 205 aaPredicted RBP7.17□□□□□ -1.26
VPS41-204ENST00000413141 TMEM132DQ14C87 1099 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 ASIC2Q16515 512 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 DUOXA2Q1HG44 320 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 TDRD12Q587J7 1177 aaKnown RBP7.17□□□□□ -1.26
VPS41-204ENST00000413141 HGSNATQ68CP4 663 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 TWF2Q6IBS0 349 aaKnown RBP7.17□□□□□ -1.26
VPS41-204ENST00000413141 TRAPPC11Q7Z392 1133 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 NT5DC4Q86YG4 428 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 CD302Q8IX05 232 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 CCAR2Q8N163 923 aaKnown RBP7.17□□□□□ -1.26
VPS41-204ENST00000413141 PPM1KQ8N3J5 372 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 SMG8Q8ND04 991 aaKnown RBP7.17□□□□□ -1.26
VPS41-204ENST00000413141 CAGE1Q8TC20 777 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 KAT5Q92993 513 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 ANKRD36BP1Q96IX9 119 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 CHP1Q99653 195 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 DESI2Q9BSY9 194 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 PI4K2AQ9BTU6 479 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 OSBPL7Q9BZF2 842 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 NHEJ1Q9H9Q4 299 aaPredicted RBP7.17□□□□□ -1.26
VPS41-204ENST00000413141 PLEKHA5Q9HAU0 1116 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 UBE2TQ9NPD8 197 aaPredicted RBP7.17□□□□□ -1.26
VPS41-204ENST00000413141 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.17□□□□□ -1.262e-6■■■■■ 82.8
VPS41-204ENST00000413141 CHST12Q9NRB3 414 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 KCND1Q9NSA2 647 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 SNTG2Q9NY99 539 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 AIPL1Q9NZN9 384 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 CNTN3Q9P232 1028 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 ARHGAP20Q9P2F6 1191 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 DERAQ9Y315 318 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 C2CD2Q9Y426 696 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 HES2Q9Y543 173 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 IPPQ9Y573 584 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 SQORQ9Y6N5 450 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 CITO14578 2027 aa7.17□□□□□ -1.26
VPS41-204ENST00000413141 SSU72P8A0A1W2PR75 194 aa7.16□□□□□ -1.26
VPS41-204ENST00000413141 USP27XA6NNY8 438 aa7.16□□□□□ -1.26
VPS41-204ENST00000413141 EVI5O60447 810 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms