RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 CCDC62Q6P9F0 684 aa7.67□□□□□ -1.18
USP40-202ENST00000409945 C14orf80Q86SX3 495 aa7.67□□□□□ -1.18
USP40-202ENST00000409945 WDR75Q8IWA0 830 aaKnown RBP7.67□□□□□ -1.18
USP40-202ENST00000409945 DDX11Q96FC9 970 aa7.67□□□□□ -1.18
USP40-202ENST00000409945 ZSWIM3Q96MP5 696 aa7.67□□□□□ -1.18
USP40-202ENST00000409945 COA1Q9GZY4 146 aa7.67□□□□□ -1.18
USP40-202ENST00000409945 CNTD2Q9H8S5 307 aa7.67□□□□□ -1.18
USP40-202ENST00000409945 GPRC5DQ9NZD1 345 aa7.67□□□□□ -1.18
USP40-202ENST00000409945 MROH5Q6ZUA9 1318 aa7.67□□□□□ -1.18
USP40-202ENST00000409945 PLIN1O60240 522 aa7.66□□□□□ -1.18
USP40-202ENST00000409945 CD40P25942 277 aa7.66□□□□□ -1.18
USP40-202ENST00000409945 HERVK_113P62684 666 aa7.66□□□□□ -1.18
USP40-202ENST00000409945 SLC6A3Q01959 620 aa7.66□□□□□ -1.18
USP40-202ENST00000409945 ATF7IPQ6VMQ6 1270 aa7.66□□□□□ -1.18
USP40-202ENST00000409945 AGBL3Q8NEM8 1001 aa7.66□□□□□ -1.18
USP40-202ENST00000409945 FAM168AQ92567 244 aa7.66□□□□□ -1.18
USP40-202ENST00000409945 SUCLG2Q96I99 432 aa7.66□□□□□ -1.18
USP40-202ENST00000409945 QRSL1Q9H0R6 528 aaKnown RBP7.66□□□□□ -1.18
USP40-202ENST00000409945 BICC1Q9H694 974 aaKnown RBP7.66□□□□□ -1.18
USP40-202ENST00000409945 CNOT7Q9UIV1 285 aaKnown RBP7.66□□□□□ -1.18
USP40-202ENST00000409945 HDAC9Q9UKV0 1011 aa7.66□□□□□ -1.18
USP40-202ENST00000409945 PSMD14O00487 310 aa7.66□□□□□ -1.18
USP40-202ENST00000409945 IL18BPO95998 194 aa7.66□□□□□ -1.18
USP40-202ENST00000409945 CDR1P51861 262 aa7.66□□□□□ -1.18
USP40-202ENST00000409945 SRSF3P84103 164 aaKnown RBP7.66□□□□□ -1.18
USP40-202ENST00000409945 CAVIN4Q5BKX8 364 aa7.66□□□□□ -1.18
USP40-202ENST00000409945 PASD1Q8IV76 773 aa7.66□□□□□ -1.18
USP40-202ENST00000409945 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.66□□□□□ -1.18
USP40-202ENST00000409945 UBE2Q2Q8WVN8 375 aa7.66□□□□□ -1.18
USP40-202ENST00000409945 NOX5Q96PH1 765 aa7.66□□□□□ -1.18
USP40-202ENST00000409945 USP44Q9H0E7 712 aa7.66□□□□□ -1.18
USP40-202ENST00000409945 CHMP4BQ9H444 224 aaKnown RBP7.66□□□□□ -1.18
USP40-202ENST00000409945 GABBR1Q9UBS5 961 aa7.66□□□□□ -1.18
USP40-202ENST00000409945 MBD1Q9UIS9 605 aaPredicted RBP7.66□□□□□ -1.18
USP40-202ENST00000409945 PCDHA5Q9Y5H7 936 aa7.66□□□□□ -1.18
USP40-202ENST00000409945 SPEF2Q9C093 1822 aa7.65□□□□□ -1.18
USP40-202ENST00000409945 UBA6A0AVT1 1052 aaPredicted RBP7.65□□□□□ -1.18
USP40-202ENST00000409945 ZNF839A8K0R7 811 aa7.65□□□□□ -1.18
USP40-202ENST00000409945 FRAT2O75474 233 aaPredicted RBP7.65□□□□□ -1.18
USP40-202ENST00000409945 PRPF6O94906 941 aaKnown RBP7.65□□□□□ -1.18
USP40-202ENST00000409945 RBP3P10745 1247 aa7.65□□□□□ -1.18
USP40-202ENST00000409945 PTGS1P23219 599 aa7.65□□□□□ -1.18
USP40-202ENST00000409945 EPS15P42566 896 aa7.65□□□□□ -1.18
USP40-202ENST00000409945 UBE4AQ14139 1066 aa7.65□□□□□ -1.18
USP40-202ENST00000409945 RABL6Q3YEC7 729 aaPredicted RBP7.65□□□□□ -1.18
USP40-202ENST00000409945 METTL24Q5JXM2 366 aa7.65□□□□□ -1.18
USP40-202ENST00000409945 PRAMEF9Q5VWM5 478 aa7.65□□□□□ -1.18
USP40-202ENST00000409945 FRMD7Q6ZUT3 714 aa7.65□□□□□ -1.18
USP40-202ENST00000409945 IGDCC3Q8IVU1 814 aa7.65□□□□□ -1.18
USP40-202ENST00000409945 CNTROBQ8N137 903 aa7.65□□□□□ -1.18
USP40-202ENST00000409945 C7orf31Q8N865 590 aa7.65□□□□□ -1.18
USP40-202ENST00000409945 SMARCC2Q8TAQ2 1214 aa7.65□□□□□ -1.18
USP40-202ENST00000409945 JPH3Q8WXH2 748 aaPredicted RBP7.65□□□□□ -1.18
USP40-202ENST00000409945 JADE3Q92613 823 aa7.65□□□□□ -1.18
USP40-202ENST00000409945 TUBGCP5Q96RT8 1024 aa7.65□□□□□ -1.18
USP40-202ENST00000409945 MCOLN1Q9GZU1 580 aa7.65□□□□□ -1.18
USP40-202ENST00000409945 ZNF180Q9UJW8 692 aa7.65□□□□□ -1.18
USP40-202ENST00000409945 DUOX1Q9NRD9 1551 aa7.65□□□□□ -1.19
USP40-202ENST00000409945 YDJCA8MPS7 323 aa7.64□□□□□ -1.19
USP40-202ENST00000409945 XPOTO43592 962 aaKnown RBP7.64□□□□□ -1.19
USP40-202ENST00000409945 IFIT1P09914 478 aaKnown RBP7.64□□□□□ -1.19
USP40-202ENST00000409945 ZSCAN20P17040 1043 aaPredicted RBP7.64□□□□□ -1.19
USP40-202ENST00000409945 ENPP1P22413 925 aa7.64□□□□□ -1.19
USP40-202ENST00000409945 FXR1P51114 621 aaKnown RBP eCLIP7.64□□□□□ -1.19
USP40-202ENST00000409945 NOLC1Q14978 699 aaKnown RBP eCLIP7.64□□□□□ -1.19
USP40-202ENST00000409945 CLUL1Q15846 466 aa7.64□□□□□ -1.19
USP40-202ENST00000409945 FSCN1Q16658 493 aaKnown RBP7.64□□□□□ -1.19
USP40-202ENST00000409945 SKIDA1Q1XH10 827 aa7.64□□□□□ -1.19
USP40-202ENST00000409945 TOR2AQ5JU69 321 aa7.64□□□□□ -1.19
USP40-202ENST00000409945 STRIP1Q5VSL9 837 aa7.64□□□□□ -1.19
USP40-202ENST00000409945 MPZL3Q6UWV2 235 aa7.64□□□□□ -1.19
USP40-202ENST00000409945 KCNK18Q7Z418 384 aa7.64□□□□□ -1.19
USP40-202ENST00000409945 DCPSQ96C86 337 aaKnown RBP7.64□□□□□ -1.19
USP40-202ENST00000409945 GORASP1Q9BQQ3 440 aa7.64□□□□□ -1.19
USP40-202ENST00000409945 NSUN3Q9H649 340 aaKnown RBP7.64□□□□□ -1.19
USP40-202ENST00000409945 MKS1Q9NXB0 559 aa7.64□□□□□ -1.19
USP40-202ENST00000409945 ARHGAP28Q9P2N2 729 aa7.64□□□□□ -1.19
USP40-202ENST00000409945 MAGEL2Q9UJ55 1249 aa7.64□□□□□ -1.19
USP40-202ENST00000409945 NUB1Q9Y5A7 615 aa7.64□□□□□ -1.19
USP40-202ENST00000409945 TAF5LO75529 589 aa7.64□□□□□ -1.19
USP40-202ENST00000409945 GNAI2P04899 355 aa7.64□□□□□ -1.19
USP40-202ENST00000409945 GLRBP48167 497 aa7.64□□□□□ -1.19
USP40-202ENST00000409945 ALDH6A1Q02252 535 aaKnown RBP7.64□□□□□ -1.19
USP40-202ENST00000409945 ADAM9Q13443 819 aa7.64□□□□□ -1.19
USP40-202ENST00000409945 EPHA10Q5JZY3 1008 aa7.64□□□□□ -1.19
USP40-202ENST00000409945 TTLL5Q6EMB2 1281 aa7.64□□□□□ -1.19
USP40-202ENST00000409945 C15orf52Q6ZUT6 534 aaKnown RBP7.64□□□□□ -1.19
USP40-202ENST00000409945 NOL8Q76FK4 1167 aaKnown RBP7.64□□□□□ -1.19
USP40-202ENST00000409945 Q8N3U1 123 aa7.64□□□□□ -1.19
USP40-202ENST00000409945 GCM1Q9NP62 436 aa7.64□□□□□ -1.19
USP40-202ENST00000409945 INCENPQ9NQS7 918 aa7.64□□□□□ -1.19
USP40-202ENST00000409945 DNAJC28Q9NX36 388 aa7.64□□□□□ -1.19
USP40-202ENST00000409945 SERPINB13Q9UIV8 391 aa7.64□□□□□ -1.19
USP40-202ENST00000409945 ASB1Q9Y576 335 aa7.64□□□□□ -1.19
USP40-202ENST00000409945 IRS2Q9Y4H2 1338 aa7.64□□□□□ -1.19
USP40-202ENST00000409945 TRIM75PA6NK02 468 aa7.63□□□□□ -1.19
USP40-202ENST00000409945 BCAR3O75815 825 aa7.63□□□□□ -1.19
USP40-202ENST00000409945 TRIM27P14373 513 aa7.63□□□□□ -1.19
USP40-202ENST00000409945 SLFN12LQ6IEE8 588 aa7.63□□□□□ -1.19
USP40-202ENST00000409945 CPA6Q8N4T0 437 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms