RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ZNF302Q9NR11 478 aa14.31□□□□□ -0.12
VPS54-203ENST00000409558 FAM114A2Q9NRY5 505 aa14.31□□□□□ -0.12
VPS54-203ENST00000409558 TMEM51Q9NW97 253 aa14.31□□□□□ -0.12
VPS54-203ENST00000409558 NOCTQ9UK39 431 aaKnown RBP14.31□□□□□ -0.12
VPS54-203ENST00000409558 KCNT1Q5JUK3 1230 aa14.31□□□□□ -0.12
VPS54-203ENST00000409558 FOXR2Q6PJQ5 311 aa14.31□□□□□ -0.12
VPS54-203ENST00000409558 MYCBPAPQ8TBZ2 947 aa14.31□□□□□ -0.12
VPS54-203ENST00000409558 NAP1L3Q99457 506 aaPredicted RBP14.31□□□□□ -0.12
VPS54-203ENST00000409558 TMEM8AQ9HCN3 771 aa14.31□□□□□ -0.12
VPS54-203ENST00000409558 BRD2P25440 801 aaKnown RBP14.3□□□□□ -0.12
VPS54-203ENST00000409558 RUFY4Q6ZNE9 571 aa14.3□□□□□ -0.12
VPS54-203ENST00000409558 SLC13A5Q86YT5 568 aaPredicted RBP14.3□□□□□ -0.12
VPS54-203ENST00000409558 FAM71AQ8IYT1 594 aa14.3□□□□□ -0.12
VPS54-203ENST00000409558 SLITRK6Q9H5Y7 841 aa14.3□□□□□ -0.12
VPS54-203ENST00000409558 KCND2Q9NZV8 630 aa14.3□□□□□ -0.12
VPS54-203ENST00000409558 MTRF1LQ9UGC7 380 aaKnown RBP14.3□□□□□ -0.12
VPS54-203ENST00000409558 SIPA1L1O43166 1804 aa14.3□□□□□ -0.12
VPS54-203ENST00000409558 ETS1P14921 441 aa14.3□□□□□ -0.12
VPS54-203ENST00000409558 GNA15P30679 374 aa14.3□□□□□ -0.12
VPS54-203ENST00000409558 CHKAP35790 457 aa14.3□□□□□ -0.12
VPS54-203ENST00000409558 RAP1GAPP47736 663 aa14.3□□□□□ -0.12
VPS54-203ENST00000409558 TDRD10Q5VZ19 366 aaKnown RBP14.3□□□□□ -0.12
VPS54-203ENST00000409558 DCUN1D2Q6PH85 259 aa14.3□□□□□ -0.12
VPS54-203ENST00000409558 RHPN2Q8IUC4 686 aa14.3□□□□□ -0.12
VPS54-203ENST00000409558 MTMR12Q9C0I1 747 aa14.3□□□□□ -0.12
VPS54-203ENST00000409558 ZNF541Q9H0D2 1346 aa14.3□□□□□ -0.12
VPS54-203ENST00000409558 HMGB2P26583 209 aaKnown RBP14.3□□□□□ -0.12
VPS54-203ENST00000409558 RPL7AP62424 266 aaKnown RBP14.3□□□□□ -0.12
VPS54-203ENST00000409558 CDR2Q01850 454 aa14.3□□□□□ -0.12
VPS54-203ENST00000409558 GNPTABQ3T906 1256 aa14.3□□□□□ -0.12
VPS54-203ENST00000409558 CYP39A1Q9NYL5 469 aa14.3□□□□□ -0.12
VPS54-203ENST00000409558 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.3□□□□□ -0.12
VPS54-203ENST00000409558 HMGB1P1B2RPK0 211 aaPredicted RBP14.29□□□□□ -0.12
VPS54-203ENST00000409558 NOP56O00567 594 aaKnown RBP14.29□□□□□ -0.12
VPS54-203ENST00000409558 ECEL1O95672 775 aa14.29□□□□□ -0.12
VPS54-203ENST00000409558 CST3P01034 146 aaPredicted RBP14.29□□□□□ -0.12
VPS54-203ENST00000409558 CHN1P15882 459 aa14.29□□□□□ -0.12
VPS54-203ENST00000409558 PPP2R2AP63151 447 aa14.29□□□□□ -0.12
VPS54-203ENST00000409558 CCDC33Q8N5R6 958 aa14.29□□□□□ -0.12
VPS54-203ENST00000409558 RNF149Q8NC42 400 aa14.29□□□□□ -0.12
VPS54-203ENST00000409558 RAPGEF5Q92565 580 aa14.29□□□□□ -0.12
VPS54-203ENST00000409558 TEX13BQ9BXU2 312 aa14.29□□□□□ -0.12
VPS54-203ENST00000409558 ACAD9Q9H845 621 aa14.29□□□□□ -0.12
VPS54-203ENST00000409558 ZWILCHQ9H900 591 aa14.29□□□□□ -0.12
VPS54-203ENST00000409558 ELP3Q9H9T3 547 aa14.29□□□□□ -0.12
VPS54-203ENST00000409558 KIAA0391O15091 583 aaKnown RBP14.29□□□□□ -0.12
VPS54-203ENST00000409558 TAS1R3Q7RTX0 852 aa14.29□□□□□ -0.12
VPS54-203ENST00000409558 MAP4K3Q8IVH8 894 aa14.29□□□□□ -0.12
VPS54-203ENST00000409558 SCYL3Q8IZE3 742 aa14.29□□□□□ -0.12
VPS54-203ENST00000409558 CALR3Q96L12 384 aaKnown RBP14.29□□□□□ -0.12
VPS54-203ENST00000409558 PRMT1Q99873 361 aaKnown RBP14.29□□□□□ -0.12
VPS54-203ENST00000409558 MTFR1LQ9H019 292 aa14.29□□□□□ -0.12
VPS54-203ENST00000409558 PHF2O75151 1096 aa14.29□□□□□ -0.12
VPS54-203ENST00000409558 EDN1P05305 212 aa14.29□□□□□ -0.12
VPS54-203ENST00000409558 MIS18BP1Q6P0N0 1132 aa14.29□□□□□ -0.12
VPS54-203ENST00000409558 SHC3Q92529 594 aa14.29□□□□□ -0.12
VPS54-203ENST00000409558 IWS1Q96ST2 819 aa14.29□□□□□ -0.12
VPS54-203ENST00000409558 PCSK1NQ9UHG2 260 aa14.29□□□□□ -0.12
VPS54-203ENST00000409558 A0A0A6YYK5 440 aaPredicted RBP14.29□□□□□ -0.12
VPS54-203ENST00000409558 ADM5C9JUS6 153 aa14.29□□□□□ -0.12
VPS54-203ENST00000409558 TLR3O15455 904 aaKnown RBP14.29□□□□□ -0.12
VPS54-203ENST00000409558 GGPS1O95749 300 aa14.29□□□□□ -0.12
VPS54-203ENST00000409558 KCNA2P16389 499 aa14.29□□□□□ -0.12
VPS54-203ENST00000409558 COILP38432 576 aaPredicted RBP14.29□□□□□ -0.12
VPS54-203ENST00000409558 NLGN2Q8NFZ4 835 aa14.29□□□□□ -0.12
VPS54-203ENST00000409558 ELAC2Q9BQ52 826 aaKnown RBP14.29□□□□□ -0.12
VPS54-203ENST00000409558 EPN3Q9H201 632 aa14.29□□□□□ -0.12
VPS54-203ENST00000409558 ZNF214Q9UL59 606 aaPredicted RBP14.29□□□□□ -0.12
VPS54-203ENST00000409558 POC1B-GALNT4F8VUJ3 575 aa14.28□□□□□ -0.12
VPS54-203ENST00000409558 DDNO94850 711 aaPredicted RBP14.28□□□□□ -0.12
VPS54-203ENST00000409558 MAPTP10636 758 aaKnown RBP14.28□□□□□ -0.12
VPS54-203ENST00000409558 CTNNA2P26232 953 aa14.28□□□□□ -0.12
VPS54-203ENST00000409558 SFNP31947 248 aa14.28□□□□□ -0.12
VPS54-203ENST00000409558 MNAT1P51948 309 aa14.28□□□□□ -0.12
VPS54-203ENST00000409558 CDH8P55286 799 aa14.28□□□□□ -0.12
VPS54-203ENST00000409558 DCAF15Q66K64 600 aa14.28□□□□□ -0.12
VPS54-203ENST00000409558 ZNF365Q70YC5 407 aa14.28□□□□□ -0.12
VPS54-203ENST00000409558 TADA2BQ86TJ2 420 aa14.28□□□□□ -0.12
VPS54-203ENST00000409558 SYNGAP1Q96PV0 1343 aa14.28□□□□□ -0.12
VPS54-203ENST00000409558 SYNCQ9H7C4 482 aa14.28□□□□□ -0.12
VPS54-203ENST00000409558 ZNF148Q9UQR1 794 aa14.28□□□□□ -0.12
VPS54-203ENST00000409558 TBC1D12O60347 775 aa14.28□□□□□ -0.12
VPS54-203ENST00000409558 DGAT1O75907 488 aa14.28□□□□□ -0.12
VPS54-203ENST00000409558 DSG3P32926 999 aa14.28□□□□□ -0.12
VPS54-203ENST00000409558 CORO7P57737 925 aa14.28□□□□□ -0.12
VPS54-203ENST00000409558 TAS2R40P59535 323 aa14.28□□□□□ -0.12
VPS54-203ENST00000409558 FAM133BQ5BKY9 247 aaKnown RBP14.28□□□□□ -0.12
VPS54-203ENST00000409558 KDM7AQ6ZMT4 941 aa14.28□□□□□ -0.12
VPS54-203ENST00000409558 RASGEF1CQ8N431 466 aa14.28□□□□□ -0.12
VPS54-203ENST00000409558 C1orf131Q8NDD1 294 aaKnown RBP14.28□□□□□ -0.12
VPS54-203ENST00000409558 HAPLN2Q9GZV7 340 aa14.28□□□□□ -0.12
VPS54-203ENST00000409558 APOBEC3GQ9HC16 384 aaKnown RBP14.28□□□□□ -0.12
VPS54-203ENST00000409558 NUB1Q9Y5A7 615 aa14.28□□□□□ -0.12
VPS54-203ENST00000409558 NRXN2Q9P2S2 1712 aa14.28□□□□□ -0.12
VPS54-203ENST00000409558 TULP2O00295 520 aa14.28□□□□□ -0.12
VPS54-203ENST00000409558 BANF1O75531 89 aa14.28□□□□□ -0.12
VPS54-203ENST00000409558 SLC9A9Q8IVB4 645 aa14.28□□□□□ -0.12
VPS54-203ENST00000409558 PRPF31Q8WWY3 499 aaKnown RBP14.28□□□□□ -0.12
VPS54-203ENST00000409558 CLMNQ96JQ2 1002 aa14.28□□□□□ -0.12
VPS54-203ENST00000409558 IMPG2Q9BZV3 1241 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms