RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 SLC12A3P55017 1021 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 KCNJ2P63252 427 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 IZUMO3Q5VZ72 239 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 EEPD1Q7L9B9 569 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 ARHGEF19Q8IW93 802 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 ANKRD35Q8N283 1001 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 PDCD7Q8N8D1 485 aaKnown RBP12.67□□□□□ -0.38
HMGB1-206ENST00000405805 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.67□□□□□ -0.38
HMGB1-206ENST00000405805 JDP2Q8WYK2 163 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 CNKSR1Q969H4 720 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 NUDCD1Q96RS6 583 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 PPP1R16BQ96T49 567 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 ATP6V0A4Q9HBG4 840 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 ZNF277Q9NRM2 450 aaPredicted RBP12.67□□□□□ -0.38
HMGB1-206ENST00000405805 HSPBP1Q9NZL4 362 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 ACOT2P49753 483 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 OVGP1Q12889 678 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 ORC2Q13416 577 aaPredicted RBP12.67□□□□□ -0.38
HMGB1-206ENST00000405805 DHX34Q14147 1143 aaKnown RBP12.67□□□□□ -0.38
HMGB1-206ENST00000405805 KBTBD12Q3ZCT8 623 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 ZBTB33Q86T24 672 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 ZBED8Q8IZ13 594 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 HIPK4Q8NE63 616 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 ATP8B4Q8TF62 1192 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 RSAD2Q8WXG1 361 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 SLC5A5Q92911 643 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 TTC17Q96AE7 1141 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 MMADHCQ9H3L0 296 aaPredicted RBP12.67□□□□□ -0.38
HMGB1-206ENST00000405805 ARHGAP42A6NI28 874 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 UBTFL6P0CB48 400 aaPredicted RBP12.66□□□□□ -0.38
HMGB1-206ENST00000405805 KRT10P13645 584 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 COILP38432 576 aaPredicted RBP12.66□□□□□ -0.38
HMGB1-206ENST00000405805 GPS1Q13098 491 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 Q4G0T1 1027 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 ZNF662Q6ZS27 426 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 SCFD2Q8WU76 684 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 CALN1Q9BXU9 219 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 GINM1Q9NU53 330 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 MAGED2Q9UNF1 606 aaPredicted RBP12.66□□□□□ -0.38
HMGB1-206ENST00000405805 M0R2N6 131 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 CASQ2O14958 399 aaPredicted RBP12.66□□□□□ -0.38
HMGB1-206ENST00000405805 PAX3P23760 479 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 TARSP26639 723 aaKnown RBP12.66□□□□□ -0.38
HMGB1-206ENST00000405805 PCYT1AP49585 367 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 TRPC3Q13507 836 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 RASA3Q14644 834 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 MDH1BQ5I0G3 518 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 CASC4Q6P4E1 433 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 SLC13A5Q86YT5 568 aaPredicted RBP12.66□□□□□ -0.38
HMGB1-206ENST00000405805 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.66□□□□□ -0.38
HMGB1-206ENST00000405805 MAIP1Q8WWC4 291 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 FAM129AQ9BZQ8 928 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 PCSK1NQ9UHG2 260 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 PITPNM2Q9BZ72 1349 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 SIPA1L3O60292 1781 aaPredicted RBP12.66□□□□□ -0.38
HMGB1-206ENST00000405805 PKD1L3Q7Z443 1732 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 CFAP69A5D8W1 941 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 FSBPO95073 299 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 STAMBPO95630 424 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 HSPA6P17066 643 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 ASTE1Q2TB18 679 aaPredicted RBP12.66□□□□□ -0.38
HMGB1-206ENST00000405805 GRK7Q8WTQ7 553 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 TRIM11Q96F44 468 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 CENPKQ9BS16 269 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 MAK16Q9BXY0 300 aaKnown RBP12.66□□□□□ -0.38
HMGB1-206ENST00000405805 PALMDQ9NP74 551 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 BAZ2AQ9UIF9 1905 aaKnown RBP12.66□□□□□ -0.38
HMGB1-206ENST00000405805 AGTP01019 485 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 RARAP10276 462 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 KITP10721 976 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 PTENP60484 403 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 ACCSLQ4AC99 568 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 FAM81AQ8TBF8 368 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 LRRC37BQ96QE4 947 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 TMEM206Q9H813 350 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 PNMA3Q9UL41 463 aa12.66□□□□□ -0.38
HMGB1-206ENST00000405805 ZCCHC18P0CG32 403 aa12.65□□□□□ -0.38
HMGB1-206ENST00000405805 TROVE2P10155 538 aaKnown RBP eCLIP12.65□□□□□ -0.38
HMGB1-206ENST00000405805 RALAP11233 206 aa12.65□□□□□ -0.38
HMGB1-206ENST00000405805 KCNA3P22001 575 aa12.65□□□□□ -0.38
HMGB1-206ENST00000405805 CCDC62Q6P9F0 684 aa12.65□□□□□ -0.38
HMGB1-206ENST00000405805 AGBL1Q96MI9 1066 aa12.65□□□□□ -0.38
HMGB1-206ENST00000405805 RBM15Q96T37 977 aaKnown RBP eCLIP12.65□□□□□ -0.38
HMGB1-206ENST00000405805 ZSWIM1Q9BR11 485 aa12.65□□□□□ -0.38
HMGB1-206ENST00000405805 PIK3R2O00459 728 aa12.65□□□□□ -0.38
HMGB1-206ENST00000405805 FAM200BP0CF97 657 aa12.65□□□□□ -0.38
HMGB1-206ENST00000405805 PPATQ06203 517 aa12.65□□□□□ -0.38
HMGB1-206ENST00000405805 CHADLQ6NUI6 762 aa12.65□□□□□ -0.38
HMGB1-206ENST00000405805 DCAF4Q8WV16 495 aa12.65□□□□□ -0.38
HMGB1-206ENST00000405805 PRMT6Q96LA8 375 aaPredicted RBP12.65□□□□□ -0.38
HMGB1-206ENST00000405805 TMEM237Q96Q45 408 aa12.65□□□□□ -0.38
HMGB1-206ENST00000405805 ANLNQ9NQW6 1124 aa12.65□□□□□ -0.38
HMGB1-206ENST00000405805 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.65□□□□□ -0.38
HMGB1-206ENST00000405805 SPECC1L-ADORA2AF8WAN1 911 aa12.65□□□□□ -0.38
HMGB1-206ENST00000405805 MAP3K7O43318 606 aa12.65□□□□□ -0.38
HMGB1-206ENST00000405805 RTN2O75298 545 aa12.65□□□□□ -0.38
HMGB1-206ENST00000405805 P3H1Q32P28 736 aa12.65□□□□□ -0.38
HMGB1-206ENST00000405805 DEPTORQ8TB45 409 aa12.65□□□□□ -0.38
HMGB1-206ENST00000405805 TATDN2Q93075 761 aa12.65□□□□□ -0.38
HMGB1-206ENST00000405805 DTNBP1Q96EV8 351 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms