RNA–Protein interactions for RNA: ENST00000404210.5

LINC00339-201, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 1,189 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-201ENST00000404210 XPOTO43592 962 aaKnown RBP13.34□□□□□ -0.27
LINC00339-201ENST00000404210 DGKIO75912 1065 aa13.34□□□□□ -0.27
LINC00339-201ENST00000404210 UPP2O95045 317 aa13.34□□□□□ -0.27
LINC00339-201ENST00000404210 THP07101 528 aa13.34□□□□□ -0.27
LINC00339-201ENST00000404210 DLATP10515 647 aaKnown RBP13.34□□□□□ -0.27
LINC00339-201ENST00000404210 TNNI1P19237 187 aa13.34□□□□□ -0.27
LINC00339-201ENST00000404210 CYP3A5P20815 502 aa13.34□□□□□ -0.27
LINC00339-201ENST00000404210 DLG4P78352 724 aa13.34□□□□□ -0.27
LINC00339-201ENST00000404210 MLLT1Q03111 559 aaPredicted RBP13.34□□□□□ -0.27
LINC00339-201ENST00000404210 KCNH2Q12809 1159 aa13.34□□□□□ -0.27
LINC00339-201ENST00000404210 MAN2A1Q16706 1144 aa13.34□□□□□ -0.27
LINC00339-201ENST00000404210 DUOXA2Q1HG44 320 aa13.34□□□□□ -0.27
LINC00339-201ENST00000404210 NOMO2Q5JPE7 1267 aa13.34□□□□□ -0.27
LINC00339-201ENST00000404210 CLLU1OSQ5K130 101 aa13.34□□□□□ -0.27
LINC00339-201ENST00000404210 C1orf220Q5T0J3 134 aa13.34□□□□□ -0.27
LINC00339-201ENST00000404210 TCERG1LQ5VWI1 586 aa13.34□□□□□ -0.27
LINC00339-201ENST00000404210 JADE1Q6IE81 842 aa13.34□□□□□ -0.27
LINC00339-201ENST00000404210 URGCPQ8TCY9 931 aa13.34□□□□□ -0.27
LINC00339-201ENST00000404210 HELQQ8TDG4 1101 aa13.34□□□□□ -0.27
LINC00339-201ENST00000404210 ZNF516Q92618 1163 aa13.34□□□□□ -0.27
LINC00339-201ENST00000404210 SLC35C1Q96A29 364 aa13.34□□□□□ -0.27
LINC00339-201ENST00000404210 ZNF689Q96CS4 500 aaPredicted RBP13.34□□□□□ -0.27
LINC00339-201ENST00000404210 KIF12Q96FN5 646 aa13.34□□□□□ -0.27
LINC00339-201ENST00000404210 ZMAT2Q96NC0 199 aaKnown RBP13.34□□□□□ -0.27
LINC00339-201ENST00000404210 SLC9A7Q96T83 725 aa13.34□□□□□ -0.27
LINC00339-201ENST00000404210 POP1Q99575 1024 aaKnown RBP13.34□□□□□ -0.27
LINC00339-201ENST00000404210 CXCL16Q9H2A7 254 aa13.34□□□□□ -0.27
LINC00339-201ENST00000404210 CXXC1Q9P0U4 656 aaPredicted RBP13.34□□□□□ -0.27
LINC00339-201ENST00000404210 UBQLN1Q9UMX0 589 aaKnown RBP13.34□□□□□ -0.27
LINC00339-201ENST00000404210 PDCD11Q14690 1871 aaKnown RBP13.33□□□□□ -0.27
LINC00339-201ENST00000404210 FNDC1Q4ZHG4 1894 aaPredicted RBP13.33□□□□□ -0.27
LINC00339-201ENST00000404210 PTGESO14684 152 aa13.33□□□□□ -0.28
LINC00339-201ENST00000404210 C4BPAP04003 597 aaKnown RBP13.33□□□□□ -0.28
LINC00339-201ENST00000404210 TPM2P07951 284 aa13.33□□□□□ -0.28
LINC00339-201ENST00000404210 FGFR1P11362 822 aa13.33□□□□□ -0.28
LINC00339-201ENST00000404210 ATP1A3P13637 1013 aa13.33□□□□□ -0.28
LINC00339-201ENST00000404210 MLH1P40692 756 aa13.33□□□□□ -0.28
LINC00339-201ENST00000404210 COPB1P53618 953 aaKnown RBP13.33□□□□□ -0.28
LINC00339-201ENST00000404210 TMEM132DQ14C87 1099 aa13.33□□□□□ -0.28
LINC00339-201ENST00000404210 KRT31Q15323 416 aa13.33□□□□□ -0.28
LINC00339-201ENST00000404210 SHHQ15465 462 aa13.33□□□□□ -0.28
LINC00339-201ENST00000404210 VWA3BQ502W6 1294 aa13.33□□□□□ -0.28
LINC00339-201ENST00000404210 APTXQ7Z2E3 356 aaKnown RBP13.33□□□□□ -0.28
LINC00339-201ENST00000404210 EFCAB13Q8IY85 973 aa13.33□□□□□ -0.28
LINC00339-201ENST00000404210 ABI1Q8IZP0 508 aa13.33□□□□□ -0.28
LINC00339-201ENST00000404210 ANKRD36BP1Q96IX9 119 aa13.33□□□□□ -0.28
LINC00339-201ENST00000404210 ZFP42Q96MM3 310 aa13.33□□□□□ -0.28
LINC00339-201ENST00000404210 PPP1R10Q96QC0 940 aaKnown RBP13.33□□□□□ -0.28
LINC00339-201ENST00000404210 UBE2OQ9C0C9 1292 aaKnown RBP13.33□□□□□ -0.28
LINC00339-201ENST00000404210 NDST4Q9H3R1 872 aa13.33□□□□□ -0.28
LINC00339-201ENST00000404210 SLC38A7Q9NVC3 462 aa13.33□□□□□ -0.28
LINC00339-201ENST00000404210 TDRD15B5MCY1 1934 aaKnown RBP13.33□□□□□ -0.28
LINC00339-201ENST00000404210 TULP1O00294 542 aaPredicted RBP13.32□□□□□ -0.28
LINC00339-201ENST00000404210 P4HA2O15460 535 aa13.32□□□□□ -0.28
LINC00339-201ENST00000404210 N4BP1O75113 896 aaKnown RBP13.32□□□□□ -0.28
LINC00339-201ENST00000404210 GJB5O95377 273 aa13.32□□□□□ -0.28
LINC00339-201ENST00000404210 POMCP01189 267 aa13.32□□□□□ -0.28
LINC00339-201ENST00000404210 TNNC2P02585 160 aa13.32□□□□□ -0.28
LINC00339-201ENST00000404210 AFPP02771 609 aaKnown RBP13.32□□□□□ -0.28
LINC00339-201ENST00000404210 NFICP08651 508 aa13.32□□□□□ -0.28
LINC00339-201ENST00000404210 TRIM49P0CI25 452 aa13.32□□□□□ -0.28
LINC00339-201ENST00000404210 TRIM49CP0CI26 452 aa13.32□□□□□ -0.28
LINC00339-201ENST00000404210 SCNN1GP51170 649 aa13.32□□□□□ -0.28
LINC00339-201ENST00000404210 AFF1P51825 1210 aaKnown RBP13.32□□□□□ -0.28
LINC00339-201ENST00000404210 HTRA4P83105 476 aaPredicted RBP13.32□□□□□ -0.28
LINC00339-201ENST00000404210 TFAMQ00059 246 aaKnown RBP13.32□□□□□ -0.28
LINC00339-201ENST00000404210 FANCCQ00597 558 aa13.32□□□□□ -0.28
LINC00339-201ENST00000404210 PLCB2Q00722 1185 aa13.32□□□□□ -0.28
LINC00339-201ENST00000404210 PPP3CAQ08209 521 aa13.32□□□□□ -0.28
LINC00339-201ENST00000404210 GRIK3Q13003 919 aa13.32□□□□□ -0.28
LINC00339-201ENST00000404210 NAB2Q15742 525 aa13.32□□□□□ -0.28
LINC00339-201ENST00000404210 FILIP1LQ4L180 1135 aa13.32□□□□□ -0.28
LINC00339-201ENST00000404210 DCAF17Q5H9S7 520 aaPredicted RBP13.32□□□□□ -0.28
LINC00339-201ENST00000404210 MIIPQ5JXC2 388 aa13.32□□□□□ -0.28
LINC00339-201ENST00000404210 C9orf50Q5SZB4 431 aa13.32□□□□□ -0.28
LINC00339-201ENST00000404210 KRT39Q6A163 491 aa13.32□□□□□ -0.28
LINC00339-201ENST00000404210 C15orf39Q6ZRI6 1047 aa13.32□□□□□ -0.28
LINC00339-201ENST00000404210 BEST2Q8NFU1 509 aa13.32□□□□□ -0.28
LINC00339-201ENST00000404210 OR5B17Q8NGF7 314 aa13.32□□□□□ -0.28
LINC00339-201ENST00000404210 MRPL9Q9BYD2 267 aaKnown RBP13.32□□□□□ -0.28
LINC00339-201ENST00000404210 VPS16Q9H269 839 aa13.32□□□□□ -0.28
LINC00339-201ENST00000404210 RC3H2Q9HBD1 1191 aaKnown RBP13.32□□□□□ -0.28
LINC00339-201ENST00000404210 TMEM8AQ9HCN3 771 aa13.32□□□□□ -0.28
LINC00339-201ENST00000404210 INPP5FQ9Y2H2 1132 aa13.32□□□□□ -0.28
LINC00339-201ENST00000404210 PTPRSQ13332 1948 aa13.31□□□□□ -0.28
LINC00339-201ENST00000404210 TBKBP1A7MCY6 615 aa13.31□□□□□ -0.28
LINC00339-201ENST00000404210 SERPINC1P01008 464 aa13.31□□□□□ -0.28
LINC00339-201ENST00000404210 TMEM191BP0C7N4 346 aa13.31□□□□□ -0.28
LINC00339-201ENST00000404210 ATP2A2P16615 1042 aaKnown RBP13.31□□□□□ -0.28
LINC00339-201ENST00000404210 LRPAP1P30533 357 aa13.31□□□□□ -0.28
LINC00339-201ENST00000404210 RPL9P32969 192 aaKnown RBP13.31□□□□□ -0.28
LINC00339-201ENST00000404210 GCLMP48507 274 aa13.31□□□□□ -0.28
LINC00339-201ENST00000404210 FMO5P49326 533 aa13.31□□□□□ -0.28
LINC00339-201ENST00000404210 TUSC3Q13454 348 aa13.31□□□□□ -0.28
LINC00339-201ENST00000404210 ZACNQ401N2 412 aa13.31□□□□□ -0.28
LINC00339-201ENST00000404210 GLRA4Q5JXX5 417 aa13.31□□□□□ -0.28
LINC00339-201ENST00000404210 LMBRD2Q68DH5 695 aaPredicted RBP13.31□□□□□ -0.28
LINC00339-201ENST00000404210 SV2AQ7L0J3 742 aa13.31□□□□□ -0.28
LINC00339-201ENST00000404210 TRAPPC11Q7Z392 1133 aa13.31□□□□□ -0.28
LINC00339-201ENST00000404210 HERC6Q8IVU3 1022 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms