RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 KRT10P13645 584 aa22.38■■□□□ 1.17
CTCF-202ENST00000401394 CRYMQ14894 314 aa22.38■■□□□ 1.17
CTCF-202ENST00000401394 TMEM109Q9BVC6 243 aa22.38■■□□□ 1.17
CTCF-202ENST00000401394 TAOK3Q9H2K8 898 aa22.38■■□□□ 1.17
CTCF-202ENST00000401394 GSTTP1A0A1W2PQM5 241 aa22.37■■□□□ 1.17
CTCF-202ENST00000401394 ENO4A6NNW6 628 aa22.37■■□□□ 1.17
CTCF-202ENST00000401394 RASA4BC9J798 803 aa22.37■■□□□ 1.17
CTCF-202ENST00000401394 MAP3K13O43283 966 aa22.37■■□□□ 1.17
CTCF-202ENST00000401394 RASA4O43374 803 aa22.37■■□□□ 1.17
CTCF-202ENST00000401394 MAPK4P31152 587 aa22.37■■□□□ 1.17
CTCF-202ENST00000401394 PPP2R5CQ13362 524 aa22.37■■□□□ 1.17
CTCF-202ENST00000401394 ANKRD20A2Q5SQ80 823 aa22.37■■□□□ 1.17
CTCF-202ENST00000401394 ANKRD20A1Q5TYW2 823 aa22.37■■□□□ 1.17
CTCF-202ENST00000401394 ANKRD20A3Q5VUR7 823 aa22.37■■□□□ 1.17
CTCF-202ENST00000401394 STRA6Q9BX79 667 aa22.37■■□□□ 1.17
CTCF-202ENST00000401394 PITPNM3Q9BZ71 974 aa22.37■■□□□ 1.17
CTCF-202ENST00000401394 FHDC1Q9C0D6 1143 aaPredicted RBP22.37■■□□□ 1.17
CTCF-202ENST00000401394 LRRC19Q9H756 370 aa22.37■■□□□ 1.17
CTCF-202ENST00000401394 PARP2Q9UGN5 583 aa22.37■■□□□ 1.17
CTCF-202ENST00000401394 TAS2R40P59535 323 aa22.37■■□□□ 1.17
CTCF-202ENST00000401394 SPOPLQ6IQ16 392 aa22.37■■□□□ 1.17
CTCF-202ENST00000401394 ASRGL1Q7L266 308 aa22.37■■□□□ 1.17
CTCF-202ENST00000401394 ZNF622Q969S3 477 aaKnown RBP eCLIP22.37■■□□□ 1.171e-6■□□□□ 10.8
CTCF-202ENST00000401394 TRIM6Q9C030 488 aaPredicted RBP22.37■■□□□ 1.17
CTCF-202ENST00000401394 ALG13Q9NP73 1137 aaKnown RBP22.37■■□□□ 1.17
CTCF-202ENST00000401394 SLC5A4Q9NY91 659 aa22.37■■□□□ 1.17
CTCF-202ENST00000401394 NOP53Q9NZM5 478 aaKnown RBP22.37■■□□□ 1.17
CTCF-202ENST00000401394 COL20A1Q9P218 1284 aa22.37■■□□□ 1.17
CTCF-202ENST00000401394 TELO2Q9Y4R8 837 aa22.37■■□□□ 1.17
CTCF-202ENST00000401394 GOLGA8SH3BPF8 625 aa22.36■■□□□ 1.17
CTCF-202ENST00000401394 GOLGA8MH3BSY2 632 aa22.36■■□□□ 1.17
CTCF-202ENST00000401394 HAUS6Q7Z4H7 955 aa22.36■■□□□ 1.17
CTCF-202ENST00000401394 HOMER2Q9NSB8 354 aa22.36■■□□□ 1.17
CTCF-202ENST00000401394 ZHX2Q9Y6X8 837 aa22.36■■□□□ 1.17
CTCF-202ENST00000401394 CFAP73A6NFT4 308 aa22.36■■□□□ 1.17
CTCF-202ENST00000401394 GAD2Q05329 585 aa22.36■■□□□ 1.17
CTCF-202ENST00000401394 CYFIP1Q7L576 1253 aa22.36■■□□□ 1.17
CTCF-202ENST00000401394 XXYLT1Q8NBI6 393 aa22.36■■□□□ 1.17
CTCF-202ENST00000401394 TTC8Q8TAM2 541 aa22.36■■□□□ 1.17
CTCF-202ENST00000401394 HELQQ8TDG4 1101 aa22.36■■□□□ 1.17
CTCF-202ENST00000401394 MROH7Q68CQ1 1323 aa22.36■■□□□ 1.17
CTCF-202ENST00000401394 CYP1A2P05177 515 aa22.35■■□□□ 1.17
CTCF-202ENST00000401394 INTS8Q75QN2 995 aaKnown RBP22.35■■□□□ 1.17
CTCF-202ENST00000401394 TRMT10CQ7L0Y3 403 aaKnown RBP22.35■■□□□ 1.17
CTCF-202ENST00000401394 RXFP1Q9HBX9 757 aa22.35■■□□□ 1.17
CTCF-202ENST00000401394 CHKBQ9Y259 395 aa22.35■■□□□ 1.17
CTCF-202ENST00000401394 ALADP13716 330 aa22.35■■□□□ 1.17
CTCF-202ENST00000401394 ATF2P15336 505 aa22.35■■□□□ 1.17
CTCF-202ENST00000401394 HADHBP55084 474 aaKnown RBP22.35■■□□□ 1.17
CTCF-202ENST00000401394 RIPK1Q13546 671 aa22.35■■□□□ 1.17
CTCF-202ENST00000401394 DDX1Q92499 740 aaKnown RBP22.35■■□□□ 1.17
CTCF-202ENST00000401394 SNF8Q96H20 258 aa22.35■■□□□ 1.17
CTCF-202ENST00000401394 AGBL1Q96MI9 1066 aa22.35■■□□□ 1.17
CTCF-202ENST00000401394 SERPINB12Q96P63 405 aa22.35■■□□□ 1.17
CTCF-202ENST00000401394 ATP8B3O60423 1300 aa22.35■■□□□ 1.17
CTCF-202ENST00000401394 A0A1W2PPM1 405 aa22.35■■□□□ 1.17
CTCF-202ENST00000401394 FSCN2O14926 492 aa22.35■■□□□ 1.17
CTCF-202ENST00000401394 KIF1CO43896 1103 aaKnown RBP22.35■■□□□ 1.17
CTCF-202ENST00000401394 PKN2Q16513 984 aaKnown RBP22.35■■□□□ 1.17
CTCF-202ENST00000401394 TMEM179Q6ZVK1 233 aa22.35■■□□□ 1.17
CTCF-202ENST00000401394 KLF6Q99612 283 aaPredicted RBP22.35■■□□□ 1.17
CTCF-202ENST00000401394 DCLK3Q9C098 648 aa22.35■■□□□ 1.17
CTCF-202ENST00000401394 KIAA1683Q9H0B3 1180 aa22.35■■□□□ 1.17
CTCF-202ENST00000401394 CLRN2A0PK11 232 aa22.34■■□□□ 1.17
CTCF-202ENST00000401394 POLR2MP0CAP2 368 aa22.34■■□□□ 1.17
CTCF-202ENST00000401394 CRELD2Q6UXH1 353 aaPredicted RBP22.34■■□□□ 1.17
CTCF-202ENST00000401394 RUNDC3BQ96NL0 473 aa22.34■■□□□ 1.17
CTCF-202ENST00000401394 KLHL14Q9P2G3 628 aa22.34■■□□□ 1.17
CTCF-202ENST00000401394 SPATA31A6Q5VVP1 1343 aa22.34■■□□□ 1.17
CTCF-202ENST00000401394 TCP10L2B9ZVM9 353 aa22.34■■□□□ 1.17
CTCF-202ENST00000401394 ENTPD5O75356 428 aa22.34■■□□□ 1.17
CTCF-202ENST00000401394 PDHA1P08559 390 aa22.34■■□□□ 1.17
CTCF-202ENST00000401394 TUBP50607 506 aa22.34■■□□□ 1.17
CTCF-202ENST00000401394 STAT2P52630 851 aa22.34■■□□□ 1.17
CTCF-202ENST00000401394 WNT7BP56706 349 aa22.34■■□□□ 1.17
CTCF-202ENST00000401394 SNRNP35Q16560 246 aaKnown RBP22.34■■□□□ 1.17
CTCF-202ENST00000401394 TATDN1Q6P1N9 297 aa22.34■■□□□ 1.17
CTCF-202ENST00000401394 SUPT20HQ8NEM7 779 aa22.34■■□□□ 1.17
CTCF-202ENST00000401394 CHRM1P11229 460 aaPredicted RBP22.33■■□□□ 1.17
CTCF-202ENST00000401394 HSPA6P17066 643 aa22.33■■□□□ 1.17
CTCF-202ENST00000401394 YY1P25490 414 aa22.33■■□□□ 1.17
CTCF-202ENST00000401394 GCAP28676 217 aa22.33■■□□□ 1.17
CTCF-202ENST00000401394 EPHB2P29323 1055 aa22.33■■□□□ 1.17
CTCF-202ENST00000401394 OVGP1Q12889 678 aa22.33■■□□□ 1.17
CTCF-202ENST00000401394 FAM102BQ5T8I3 360 aa22.33■■□□□ 1.17
CTCF-202ENST00000401394 IZUMO3Q5VZ72 239 aa22.33■■□□□ 1.17
CTCF-202ENST00000401394 SHC3Q92529 594 aa22.33■■□□□ 1.17
CTCF-202ENST00000401394 CSRNP1Q96S65 589 aa22.33■■□□□ 1.17
CTCF-202ENST00000401394 RPA3P35244 121 aaPredicted RBP22.33■■□□□ 1.16
CTCF-202ENST00000401394 GCKP35557 465 aa22.33■■□□□ 1.16
CTCF-202ENST00000401394 P3H1Q32P28 736 aa22.33■■□□□ 1.16
CTCF-202ENST00000401394 ZFYVE27Q5T4F4 411 aa22.33■■□□□ 1.16
CTCF-202ENST00000401394 HHIPL2Q6UWX4 724 aa22.33■■□□□ 1.16
CTCF-202ENST00000401394 MIER3Q7Z3K6 550 aa22.33■■□□□ 1.16
CTCF-202ENST00000401394 VSIG1Q86XK7 387 aa22.33■■□□□ 1.16
CTCF-202ENST00000401394 ROPN1BQ9BZX4 212 aaPredicted RBP22.33■■□□□ 1.16
CTCF-202ENST00000401394 YIPF3Q9GZM5 350 aa22.33■■□□□ 1.16
CTCF-202ENST00000401394 STMN4Q9H169 189 aaPredicted RBP22.33■■□□□ 1.16
CTCF-202ENST00000401394 ROPN1Q9HAT0 212 aaPredicted RBP22.33■■□□□ 1.16
CTCF-202ENST00000401394 KCNH7Q9NS40 1196 aa22.33■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms