RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 YEATS2Q9ULM3 1422 aa12.46□□□□□ -0.42
SYNPO-202ENST00000394243 NUDT2P50583 147 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 CDH6P55285 790 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 P3H2Q8IVL5 708 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 SCUBE1Q8IWY4 988 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 PARVAQ9NVD7 372 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 KIF28PB7ZC32 967 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 APRTP07741 180 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 TRIM49P0CI25 452 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 TRIM49CP0CI26 452 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 MAGEA4P43358 317 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 ACTR2P61160 394 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 KRT33BQ14525 404 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 DOK7Q18PE1 504 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 ZNF699Q32M78 642 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 RIN3Q8TB24 985 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 PGBD4Q96DM1 585 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 FAM213AQ9BRX8 229 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 UBN2Q6ZU65 1347 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 F8W8V4 182 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 LDHAP00338 332 aaKnown RBP12.45□□□□□ -0.42
SYNPO-202ENST00000394243 NLRP10Q86W26 655 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 GUF1Q8N442 669 aaKnown RBP12.45□□□□□ -0.42
SYNPO-202ENST00000394243 BTG4Q9NY30 223 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 ZC3H7BQ9UGR2 993 aaKnown RBP12.45□□□□□ -0.42
SYNPO-202ENST00000394243 TFR2Q9UP52 801 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 SERPINB8P50452 374 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 C16orf72Q14CZ0 275 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 SYDE2Q5VT97 1194 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 MTHFD1LQ6UB35 978 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 E2F7Q96AV8 911 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 CEP95Q96GE4 821 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 C8orf37Q96NL8 207 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 ERP44Q9BS26 406 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 PAIP1Q9H074 479 aaKnown RBP12.45□□□□□ -0.42
SYNPO-202ENST00000394243 PARVBQ9HBI1 364 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 PCDHGB4Q9UN71 923 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 TMEM191CA6NGB0 347 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 TPST1O60507 370 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 CCND2P30279 289 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 SDC4P31431 198 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 SNAP25P60880 206 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 PTK2BQ14289 1009 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 MAPRE1Q15691 268 aaKnown RBP12.45□□□□□ -0.42
SYNPO-202ENST00000394243 CC2D2BQ6DHV5 1058 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 COL23A1Q86Y22 540 aaPredicted RBP12.45□□□□□ -0.42
SYNPO-202ENST00000394243 MFN1Q8IWA4 741 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 USP38Q8NB14 1042 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 BTBD7Q9P203 1132 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 ADD3Q9UEY8 706 aaKnown RBP12.45□□□□□ -0.42
SYNPO-202ENST00000394243 GCC2Q8IWJ2 1684 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 MYO1DO94832 1006 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 SRGNP10124 158 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 GALCP54803 685 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 SUGP1Q8IWZ8 645 aaKnown RBP12.45□□□□□ -0.42
SYNPO-202ENST00000394243 BTN2A2Q8WVV5 523 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 CASKIN2Q8WXE0 1202 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 ABHD8Q96I13 439 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 RGL1Q9NZL6 768 aa12.45□□□□□ -0.42
SYNPO-202ENST00000394243 POTECB2RU33 542 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 UBOX5O94941 541 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 FKBP9O95302 570 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 CYP2E1P05181 493 aaPredicted RBP12.44□□□□□ -0.42
SYNPO-202ENST00000394243 MYL2P10916 166 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 ADARP55265 1226 aaKnown RBP12.44□□□□□ -0.42
SYNPO-202ENST00000394243 PFKFB3Q16875 520 aaPredicted RBP12.44□□□□□ -0.42
SYNPO-202ENST00000394243 FKBP9P1Q75LS8 142 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 LPCAT2Q7L5N7 544 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 BNIPLQ7Z465 357 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 OR8H2Q8N162 312 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 DHX35Q9H5Z1 703 aaKnown RBP12.44□□□□□ -0.42
SYNPO-202ENST00000394243 FAM32AQ9Y421 112 aaKnown RBP12.44□□□□□ -0.42
SYNPO-202ENST00000394243 ATP10DQ9P241 1426 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 RAPGEF6Q8TEU7 1601 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 ZNF804BA4D1E1 1349 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 RNF103O00237 685 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 APOL1O14791 398 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 WEE2P0C1S8 567 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 IMPDH2P12268 514 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 SLC9A1P19634 815 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 KANSL2Q9H9L4 492 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 AFF4Q9UHB7 1163 aaKnown RBP12.44□□□□□ -0.42
SYNPO-202ENST00000394243 NEDD4P46934 1319 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 CFAP43Q8NDM7 1665 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 H0YIN7 160 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 BMP3P12645 472 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 NLRP9Q7RTR0 991 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 RIBC1Q8N443 379 aaPredicted RBP12.44□□□□□ -0.42
SYNPO-202ENST00000394243 NLRP4Q96MN2 994 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 TRIM45Q9H8W5 580 aaPredicted RBP12.44□□□□□ -0.42
SYNPO-202ENST00000394243 SMNDC1O75940 238 aaKnown RBP eCLIP12.44□□□□□ -0.42
SYNPO-202ENST00000394243 PSAPP07602 524 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 ARPP19P56211 112 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 AASDHQ4L235 1098 aaPredicted RBP12.44□□□□□ -0.42
SYNPO-202ENST00000394243 ARHGAP17Q68EM7 881 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 NANOGNBQ7Z5D8 188 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 PRUNE1Q86TP1 453 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 ARID3BQ8IVW6 561 aaPredicted RBP12.44□□□□□ -0.42
SYNPO-202ENST00000394243 TERB1Q8NA31 727 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 OTUB1Q96FW1 271 aaPredicted RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms