RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 CRYMQ14894 314 aa8.69□□□□□ -1.02
LIMS1-203ENST00000393310 MAPRE1Q15691 268 aaKnown RBP8.69□□□□□ -1.02
LIMS1-203ENST00000393310 CEP55Q53EZ4 464 aa8.69□□□□□ -1.02
LIMS1-203ENST00000393310 LAIR1Q6GTX8 287 aa8.69□□□□□ -1.02
LIMS1-203ENST00000393310 EFCAB12Q6NXP0 572 aa8.69□□□□□ -1.02
LIMS1-203ENST00000393310 SYT10Q6XYQ8 523 aa8.69□□□□□ -1.02
LIMS1-203ENST00000393310 SH3RF1Q7Z6J0 888 aa8.69□□□□□ -1.02
LIMS1-203ENST00000393310 SRLQ86TD4 932 aa8.69□□□□□ -1.02
LIMS1-203ENST00000393310 SIX5Q8N196 739 aa8.69□□□□□ -1.02
LIMS1-203ENST00000393310 DTWD2Q8NBA8 298 aa8.69□□□□□ -1.02
LIMS1-203ENST00000393310 EFHD2Q96C19 240 aaPredicted RBP8.69□□□□□ -1.02
LIMS1-203ENST00000393310 PCMTD1Q96MG8 357 aaPredicted RBP8.69□□□□□ -1.02
LIMS1-203ENST00000393310 CD52P31358 61 aa8.69□□□□□ -1.02
LIMS1-203ENST00000393310 RECQLP46063 649 aaPredicted RBP8.69□□□□□ -1.02
LIMS1-203ENST00000393310 KCNH2Q12809 1159 aa8.69□□□□□ -1.02
LIMS1-203ENST00000393310 MYO1EQ12965 1108 aa8.69□□□□□ -1.02
LIMS1-203ENST00000393310 CUL4BQ13620 913 aa8.69□□□□□ -1.02
LIMS1-203ENST00000393310 HLTFQ14527 1009 aaKnown RBP eCLIP8.69□□□□□ -1.02
LIMS1-203ENST00000393310 VARS2Q5ST30 1063 aaKnown RBP8.69□□□□□ -1.02
LIMS1-203ENST00000393310 ZNF654Q8IZM8 581 aa8.69□□□□□ -1.02
LIMS1-203ENST00000393310 GUCD1Q96NT3 240 aa8.69□□□□□ -1.02
LIMS1-203ENST00000393310 PARVBQ9HBI1 364 aa8.69□□□□□ -1.02
LIMS1-203ENST00000393310 PLSCR2Q9NRY7 297 aa8.69□□□□□ -1.02
LIMS1-203ENST00000393310 SLC12A6Q9UHW9 1150 aa8.69□□□□□ -1.02
LIMS1-203ENST00000393310 FBXO2Q9UK22 296 aaPredicted RBP8.69□□□□□ -1.02
LIMS1-203ENST00000393310 SRPRBQ9Y5M8 271 aaKnown RBP8.69□□□□□ -1.02
LIMS1-203ENST00000393310 USP54Q70EL1 1684 aa8.69□□□□□ -1.02
LIMS1-203ENST00000393310 LSM1O15116 133 aaKnown RBP8.68□□□□□ -1.02
LIMS1-203ENST00000393310 DHPSP49366 369 aaPredicted RBP8.68□□□□□ -1.02
LIMS1-203ENST00000393310 DAB2P98082 770 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 NFE2Q16621 373 aaPredicted RBP8.68□□□□□ -1.02
LIMS1-203ENST00000393310 ZNF483Q8TF39 744 aaPredicted RBP8.68□□□□□ -1.02
LIMS1-203ENST00000393310 IFT122Q9HBG6 1241 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 DYRK4Q9NR20 520 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 BCORQ6W2J9 1755 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 DDX60Q8IY21 1712 aaKnown RBP8.68□□□□□ -1.02
LIMS1-203ENST00000393310 KLF18A0A0U1RQI7 1052 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 ADAMTS4O75173 837 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 IMPDH2P12268 514 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 HOXA13P31271 388 aaPredicted RBP8.68□□□□□ -1.02
LIMS1-203ENST00000393310 MAN1A1P33908 653 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 MLLT3P42568 568 aaPredicted RBP8.68□□□□□ -1.02
LIMS1-203ENST00000393310 SMARCB1Q12824 385 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 KRT40Q6A162 431 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 SRRTQ9BXP5 876 aaKnown RBP8.68□□□□□ -1.02
LIMS1-203ENST00000393310 SH2B1Q9NRF2 756 aaPredicted RBP8.68□□□□□ -1.02
LIMS1-203ENST00000393310 DNM3Q9UQ16 869 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 STMND1H3BQB6 276 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 IL4RP24394 825 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 LIG4P49917 911 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 STIM1Q13586 685 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 ODF2Q5BJF6 829 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 TMC5Q6UXY8 1006 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 PLPPR4Q7Z2D5 763 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 ADGRF4Q8IZF3 695 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 BBOF1Q8ND07 529 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 THOC1Q96FV9 657 aaKnown RBP8.68□□□□□ -1.02
LIMS1-203ENST00000393310 TTC1Q99614 292 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 MBTPS2O43462 519 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 CD4P01730 458 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 C21orf59P57076 290 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 CELF5Q8N6W0 485 aaKnown RBP8.68□□□□□ -1.02
LIMS1-203ENST00000393310 EXOC6Q8TAG9 804 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 RABGGTAQ92696 567 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 GFM2Q969S9 779 aaKnown RBP8.68□□□□□ -1.02
LIMS1-203ENST00000393310 MTMR9Q96QG7 549 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 PIGSQ96S52 555 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 SNX25Q9H3E2 840 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 CYP4F11Q9HBI6 524 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 CNGB3Q9NQW8 809 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 ZSCAN32Q9NX65 697 aa8.68□□□□□ -1.02
LIMS1-203ENST00000393310 ZNF862O60290 1169 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 CFIP05156 583 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 ALPPL2P10696 532 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 LY6KQ17RY6 165 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 CEP85LQ5SZL2 805 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 FAM102BQ5T8I3 360 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 AGMOQ6ZNB7 445 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 KIAA2013Q8IYS2 634 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 SUN5Q8TC36 379 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 TSC1Q92574 1164 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 MED10Q9BTT4 135 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 WNT16Q9UBV4 365 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 SCN11AQ9UI33 1791 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 BECN2A8MW95 431 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 HNRNPCP07910 306 aaKnown RBP eCLIP8.67□□□□□ -1.023e-6■□□□□ 11
LIMS1-203ENST00000393310 KRT7P08729 469 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 ICAM3P32942 547 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 SNAP25P60880 206 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 PCNX4Q63HM2 1172 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 PNMA5Q96PV4 448 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 CTAGE1Q96RT6 745 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 BACH2Q9BYV9 841 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 VCXQ9H320 206 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 CCSER2Q9H7U1 834 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 KIF9Q9HAQ2 790 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 MUTYHQ9UIF7 546 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 CA14Q9ULX7 337 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 TARSL2A2RTX5 802 aaKnown RBP8.67□□□□□ -1.02
LIMS1-203ENST00000393310 LRRD1A4D1F6 860 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms