RNA–Protein interactions for RNA: ENST00000392449.4

PTPRK-208, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 1,456 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-208ENST00000392449 C8AP07357 584 aa18.18■□□□□ 0.5
PTPRK-208ENST00000392449 CFHP08603 1231 aa18.18■□□□□ 0.5
PTPRK-208ENST00000392449 NPR3P17342 541 aa18.18■□□□□ 0.5
PTPRK-208ENST00000392449 FGFR3P22607 806 aa18.18■□□□□ 0.5
PTPRK-208ENST00000392449 PROZP22891 400 aa18.18■□□□□ 0.5
PTPRK-208ENST00000392449 GUCY2CP25092 1073 aa18.18■□□□□ 0.5
PTPRK-208ENST00000392449 YARSP54577 528 aaKnown RBP18.18■□□□□ 0.5
PTPRK-208ENST00000392449 SLC12A3P55017 1021 aa18.18■□□□□ 0.5
PTPRK-208ENST00000392449 ASTLQ6HA08 431 aaPredicted RBP18.18■□□□□ 0.5
PTPRK-208ENST00000392449 ALKAL1Q6UXT8 129 aa18.18■□□□□ 0.5
PTPRK-208ENST00000392449 CYP26C1Q6V0L0 522 aa18.18■□□□□ 0.5
PTPRK-208ENST00000392449 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.18■□□□□ 0.5
PTPRK-208ENST00000392449 SIX5Q8N196 739 aa18.18■□□□□ 0.5
PTPRK-208ENST00000392449 SLC7A14Q8TBB6 771 aa18.18■□□□□ 0.5
PTPRK-208ENST00000392449 C18orf25Q96B23 403 aaPredicted RBP18.18■□□□□ 0.5
PTPRK-208ENST00000392449 DDX27Q96GQ7 796 aaKnown RBP18.18■□□□□ 0.5
PTPRK-208ENST00000392449 SNX27Q96L92 541 aa18.18■□□□□ 0.5
PTPRK-208ENST00000392449 PRRX2Q99811 253 aa18.18■□□□□ 0.5
PTPRK-208ENST00000392449 TCHPQ9BT92 498 aa18.18■□□□□ 0.5
PTPRK-208ENST00000392449 FBXL21Q9UKT6 434 aa18.18■□□□□ 0.5
PTPRK-208ENST00000392449 SMC3Q9UQE7 1217 aa18.18■□□□□ 0.5
PTPRK-208ENST00000392449 VPS13AQ96RL7 3174 aa18.18■□□□□ 0.5
PTPRK-208ENST00000392449 DMDP11532 3685 aa18.17■□□□□ 0.5
PTPRK-208ENST00000392449 TMEM189-UBE2V1I3L0A0 370 aa18.17■□□□□ 0.5
PTPRK-208ENST00000392449 PLA2G4BP0C869 781 aa18.17■□□□□ 0.5
PTPRK-208ENST00000392449 GRIN1Q05586 938 aa18.17■□□□□ 0.5
PTPRK-208ENST00000392449 ELAVL2Q12926 359 aaKnown RBP18.17■□□□□ 0.5
PTPRK-208ENST00000392449 TMEM119Q4V9L6 283 aa18.17■□□□□ 0.5
PTPRK-208ENST00000392449 XKR4Q5GH76 650 aa18.17■□□□□ 0.5
PTPRK-208ENST00000392449 PPM1LQ5SGD2 360 aa18.17■□□□□ 0.5
PTPRK-208ENST00000392449 LIN9Q5TKA1 542 aa18.17■□□□□ 0.5
PTPRK-208ENST00000392449 DCLRE1AQ6PJP8 1040 aa18.17■□□□□ 0.5
PTPRK-208ENST00000392449 MPZL3Q6UWV2 235 aa18.17■□□□□ 0.5
PTPRK-208ENST00000392449 APBB1IPQ7Z5R6 666 aaPredicted RBP18.17■□□□□ 0.5
PTPRK-208ENST00000392449 SYT2Q8N9I0 419 aaPredicted RBP18.17■□□□□ 0.5
PTPRK-208ENST00000392449 TMEM161BQ8NDZ6 487 aa18.17■□□□□ 0.5
PTPRK-208ENST00000392449 HCFC1R1Q9NWW0 138 aa18.17■□□□□ 0.5
PTPRK-208ENST00000392449 IGSF9Q9P2J2 1179 aa18.17■□□□□ 0.5
PTPRK-208ENST00000392449 MTRRQ9UBK8 725 aa18.17■□□□□ 0.5
PTPRK-208ENST00000392449 POLIQ9UNA4 740 aa18.17■□□□□ 0.5
PTPRK-208ENST00000392449 CDY1Q9Y6F8 540 aa18.17■□□□□ 0.5
PTPRK-208ENST00000392449 PDCD11Q14690 1871 aaKnown RBP18.17■□□□□ 0.5
PTPRK-208ENST00000392449 NOTCH4Q99466 2003 aa18.16■□□□□ 0.5
PTPRK-208ENST00000392449 GALR2O43603 387 aaPredicted RBP18.16■□□□□ 0.5
PTPRK-208ENST00000392449 C1RP00736 705 aa18.16■□□□□ 0.5
PTPRK-208ENST00000392449 MAPTP10636 758 aaKnown RBP18.16■□□□□ 0.5
PTPRK-208ENST00000392449 MCF2P10911 925 aa18.16■□□□□ 0.5
PTPRK-208ENST00000392449 LAMP2P13473 410 aa18.16■□□□□ 0.5
PTPRK-208ENST00000392449 PLS3P13797 630 aa18.16■□□□□ 0.5
PTPRK-208ENST00000392449 ARSHQ5FYA8 562 aa18.16■□□□□ 0.5
PTPRK-208ENST00000392449 SLC44A3Q8N4M1 653 aa18.16■□□□□ 0.5
PTPRK-208ENST00000392449 ATOH1Q92858 354 aaPredicted RBP18.16■□□□□ 0.5
PTPRK-208ENST00000392449 CDK5RAP3Q96JB5 506 aa18.16■□□□□ 0.5
PTPRK-208ENST00000392449 TBC1D32Q96NH3 1257 aa18.16■□□□□ 0.5
PTPRK-208ENST00000392449 RPP25Q9BUL9 199 aaKnown RBP18.16■□□□□ 0.5
PTPRK-208ENST00000392449 HAPLN2Q9GZV7 340 aa18.16■□□□□ 0.5
PTPRK-208ENST00000392449 TOPORSQ9NS56 1045 aaPredicted RBP18.16■□□□□ 0.5
PTPRK-208ENST00000392449 RBM19Q9Y4C8 960 aaKnown RBP18.16■□□□□ 0.5
PTPRK-208ENST00000392449 COL4A3Q01955 1670 aa18.15■□□□□ 0.5
PTPRK-208ENST00000392449 KRBA1A5PL33 1030 aa18.15■□□□□ 0.5
PTPRK-208ENST00000392449 PODXLO00592 558 aa18.15■□□□□ 0.5
PTPRK-208ENST00000392449 FSHRP23945 695 aa18.15■□□□□ 0.5
PTPRK-208ENST00000392449 RAB33AQ14088 237 aa18.15■□□□□ 0.5
PTPRK-208ENST00000392449 DHX8Q14562 1220 aaKnown RBP18.15■□□□□ 0.5
PTPRK-208ENST00000392449 AXDND1Q5T1B0 1012 aaPredicted RBP18.15■□□□□ 0.5
PTPRK-208ENST00000392449 LARP1BQ659C4 914 aaKnown RBP18.15■□□□□ 0.5
PTPRK-208ENST00000392449 UROC1Q96N76 676 aa18.15■□□□□ 0.5
PTPRK-208ENST00000392449 ACAP3Q96P50 834 aa18.15■□□□□ 0.5
PTPRK-208ENST00000392449 NTPCRQ9BSD7 190 aaKnown RBP18.15■□□□□ 0.5
PTPRK-208ENST00000392449 C17orf75Q9HAS0 396 aa18.15■□□□□ 0.5
PTPRK-208ENST00000392449 UPF2Q9HAU5 1272 aaKnown RBP18.15■□□□□ 0.5
PTPRK-208ENST00000392449 CA14Q9ULX7 337 aa18.15■□□□□ 0.5
PTPRK-208ENST00000392449 NUMBLQ9Y6R0 609 aa18.15■□□□□ 0.5
PTPRK-208ENST00000392449 SPAG1Q07617 926 aa18.14■□□□□ 0.5
PTPRK-208ENST00000392449 STRN3Q13033 797 aa18.14■□□□□ 0.5
PTPRK-208ENST00000392449 HTR4Q13639 388 aa18.14■□□□□ 0.5
PTPRK-208ENST00000392449 NOLC1Q14978 699 aaKnown RBP eCLIP18.14■□□□□ 0.5
PTPRK-208ENST00000392449 ARL6IP4Q66PJ3 421 aaKnown RBP18.14■□□□□ 0.5
PTPRK-208ENST00000392449 ITFG1Q8TB96 612 aa18.14■□□□□ 0.5
PTPRK-208ENST00000392449 SPIRE2Q8WWL2 714 aa18.14■□□□□ 0.5
PTPRK-208ENST00000392449 TIPINQ9BVW5 301 aa18.14■□□□□ 0.5
PTPRK-208ENST00000392449 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.14■□□□□ 0.5
PTPRK-208ENST00000392449 CNTN3Q9P232 1028 aa18.14■□□□□ 0.5
PTPRK-208ENST00000392449 TUBGCP4Q9UGJ1 667 aa18.14■□□□□ 0.5
PTPRK-208ENST00000392449 MYH15Q9Y2K3 1946 aa18.14■□□□□ 0.5
PTPRK-208ENST00000392449 KCNE1P15382 129 aa18.14■□□□□ 0.49
PTPRK-208ENST00000392449 SLC10A6Q3KNW5 377 aa18.14■□□□□ 0.49
PTPRK-208ENST00000392449 PDXDC1Q6P996 788 aa18.14■□□□□ 0.49
PTPRK-208ENST00000392449 FGF14Q92915 247 aa18.14■□□□□ 0.49
PTPRK-208ENST00000392449 REEP2Q9BRK0 252 aa18.14■□□□□ 0.49
PTPRK-208ENST00000392449 ANHXE9PGG2 379 aa18.13■□□□□ 0.49
PTPRK-208ENST00000392449 TOM1L1O75674 476 aa18.13■□□□□ 0.49
PTPRK-208ENST00000392449 HNRNPA1P09651 372 aaKnown RBP eCLIP18.13■□□□□ 0.49
PTPRK-208ENST00000392449 CXCL8P10145 99 aa18.13■□□□□ 0.49
PTPRK-208ENST00000392449 AOC1P19801 751 aa18.13■□□□□ 0.49
PTPRK-208ENST00000392449 TNFSF9P41273 254 aa18.13■□□□□ 0.49
PTPRK-208ENST00000392449 CLCN5P51795 746 aa18.13■□□□□ 0.49
PTPRK-208ENST00000392449 ARPP19P56211 112 aa18.13■□□□□ 0.49
PTPRK-208ENST00000392449 KARSQ15046 597 aaKnown RBP18.13■□□□□ 0.49
PTPRK-208ENST00000392449 VARS2Q5ST30 1063 aaKnown RBP18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms