RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 ZNHIT6Q9NWK9 470 aaKnown RBP11.05□□□□□ -0.64
VPS53-202ENST00000389040 CXXC1Q9P0U4 656 aaPredicted RBP11.05□□□□□ -0.64
VPS53-202ENST00000389040 KANSL3Q9P2N6 904 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 LRFN2Q9ULH4 789 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 COLQQ9Y215 455 aaPredicted RBP11.05□□□□□ -0.64
VPS53-202ENST00000389040 SIK3Q9Y2K2 1263 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 PCDHB2Q9Y5E7 798 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 PCDHA11Q9Y5I1 949 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 STYXL1Q9Y6J8 313 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 HNRNPDLO14979 420 aaKnown RBP11.05□□□□□ -0.64
VPS53-202ENST00000389040 CLDN3O15551 220 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 FGFR4P22455 802 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 NMT1P30419 496 aaKnown RBP11.05□□□□□ -0.64
VPS53-202ENST00000389040 HTRA4P83105 476 aaPredicted RBP11.05□□□□□ -0.64
VPS53-202ENST00000389040 C1QBPQ07021 282 aaKnown RBP11.05□□□□□ -0.64
VPS53-202ENST00000389040 MCL1Q07820 350 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 ELF2Q15723 593 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 RAB30Q15771 203 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 CCDC40Q4G0X9 1142 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 GPR153Q6NV75 609 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 MPZL3Q6UWV2 235 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 ZNF598Q86UK7 904 aaKnown RBP11.05□□□□□ -0.64
VPS53-202ENST00000389040 LRRN4CLQ8ND94 238 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 LINC01599Q8WXQ3 324 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 PDZD7Q9H5P4 517 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 SSUH2Q9Y2M2 353 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 GIT1Q9Y2X7 761 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 PDE4DIPQ5VU43 2346 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 TMEM265A0A087WTH1 108 aa11.04□□□□□ -0.64
VPS53-202ENST00000389040 INPPL1O15357 1258 aa11.04□□□□□ -0.64
VPS53-202ENST00000389040 DGKIO75912 1065 aa11.04□□□□□ -0.64
VPS53-202ENST00000389040 ARHGAP25P42331 645 aa11.04□□□□□ -0.64
VPS53-202ENST00000389040 LIG4P49917 911 aa11.04□□□□□ -0.64
VPS53-202ENST00000389040 CDK17Q00537 523 aa11.04□□□□□ -0.64
VPS53-202ENST00000389040 TCTN1Q2MV58 587 aa11.04□□□□□ -0.64
VPS53-202ENST00000389040 EDRF1Q3B7T1 1238 aa11.04□□□□□ -0.64
VPS53-202ENST00000389040 UBXN11Q5T124 520 aa11.04□□□□□ -0.64
VPS53-202ENST00000389040 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.04□□□□□ -0.64
VPS53-202ENST00000389040 ZC3H3Q8IXZ2 948 aaKnown RBP11.04□□□□□ -0.64
VPS53-202ENST00000389040 MNS1Q8NEH6 495 aa11.04□□□□□ -0.64
VPS53-202ENST00000389040 BICD1Q96G01 975 aa11.04□□□□□ -0.64
VPS53-202ENST00000389040 TCHPQ9BT92 498 aa11.04□□□□□ -0.64
VPS53-202ENST00000389040 ZBED2Q9BTP6 218 aa11.04□□□□□ -0.64
VPS53-202ENST00000389040 MSRAQ9UJ68 235 aa11.04□□□□□ -0.64
VPS53-202ENST00000389040 REXO2Q9Y3B8 237 aaKnown RBP11.04□□□□□ -0.64
VPS53-202ENST00000389040 MRFAP1Q9Y605 127 aa11.04□□□□□ -0.64
VPS53-202ENST00000389040 EVPLQ92817 2033 aa11.04□□□□□ -0.64
VPS53-202ENST00000389040 B4GALT5O43286 388 aa11.03□□□□□ -0.64
VPS53-202ENST00000389040 LDHAP00338 332 aaKnown RBP11.03□□□□□ -0.64
VPS53-202ENST00000389040 GARTP22102 1010 aa11.03□□□□□ -0.64
VPS53-202ENST00000389040 CASP5P51878 434 aa11.03□□□□□ -0.64
VPS53-202ENST00000389040 MARSP56192 900 aaKnown RBP11.03□□□□□ -0.64
VPS53-202ENST00000389040 MYBPC2Q14324 1141 aa11.03□□□□□ -0.64
VPS53-202ENST00000389040 KNOP1Q1ED39 458 aaKnown RBP11.03□□□□□ -0.64
VPS53-202ENST00000389040 ZNF569Q5MCW4 686 aa11.03□□□□□ -0.64
VPS53-202ENST00000389040 HS2ST1Q7LGA3 356 aa11.03□□□□□ -0.64
VPS53-202ENST00000389040 CMTR2Q8IYT2 770 aaKnown RBP11.03□□□□□ -0.64
VPS53-202ENST00000389040 SYCP3Q8IZU3 236 aa11.03□□□□□ -0.64
VPS53-202ENST00000389040 ZNF689Q96CS4 500 aaPredicted RBP11.03□□□□□ -0.64
VPS53-202ENST00000389040 TARS2Q9BW92 718 aaKnown RBP11.03□□□□□ -0.64
VPS53-202ENST00000389040 MRPL9Q9BYD2 267 aaKnown RBP11.03□□□□□ -0.64
VPS53-202ENST00000389040 TMEM117Q9H0C3 514 aa11.03□□□□□ -0.64
VPS53-202ENST00000389040 GBP3Q9H0R5 595 aa11.03□□□□□ -0.64
VPS53-202ENST00000389040 KIAA1586Q9HCI6 787 aa11.03□□□□□ -0.64
VPS53-202ENST00000389040 TOPORSQ9NS56 1045 aaPredicted RBP11.03□□□□□ -0.64
VPS53-202ENST00000389040 FAM207AQ9NSI2 230 aaPredicted RBP11.03□□□□□ -0.64
VPS53-202ENST00000389040 MYO1AQ9UBC5 1043 aa11.03□□□□□ -0.64
VPS53-202ENST00000389040 A0A0B4J269 797 aa11.03□□□□□ -0.64
VPS53-202ENST00000389040 TLL1O43897 1013 aa11.03□□□□□ -0.64
VPS53-202ENST00000389040 ITGA4P13612 1032 aa11.03□□□□□ -0.64
VPS53-202ENST00000389040 HNRNPH3P31942 346 aaKnown RBP11.03□□□□□ -0.64
VPS53-202ENST00000389040 CYLC1P35663 651 aaPredicted RBP11.03□□□□□ -0.64
VPS53-202ENST00000389040 GRM5P41594 1212 aa11.03□□□□□ -0.64
VPS53-202ENST00000389040 KRT83P78385 493 aa11.03□□□□□ -0.64
VPS53-202ENST00000389040 DEFB103AP81534 67 aa11.03□□□□□ -0.64
VPS53-202ENST00000389040 ERCC6LQ2NKX8 1250 aa11.03□□□□□ -0.64
VPS53-202ENST00000389040 ZC2HC1CQ53FD0 456 aaPredicted RBP11.03□□□□□ -0.64
VPS53-202ENST00000389040 GLB1LQ6UWU2 654 aa11.03□□□□□ -0.64
VPS53-202ENST00000389040 CCDC170Q8IYT3 715 aa11.03□□□□□ -0.64
VPS53-202ENST00000389040 ABI1Q8IZP0 508 aa11.03□□□□□ -0.64
VPS53-202ENST00000389040 CPB2Q96IY4 423 aa11.03□□□□□ -0.64
VPS53-202ENST00000389040 CARD6Q9BX69 1037 aa11.03□□□□□ -0.64
VPS53-202ENST00000389040 MMRN2Q9H8L6 949 aa11.03□□□□□ -0.64
VPS53-202ENST00000389040 NHEJ1Q9H9Q4 299 aaPredicted RBP11.03□□□□□ -0.64
VPS53-202ENST00000389040 PLEKHA5Q9HAU0 1116 aa11.03□□□□□ -0.64
VPS53-202ENST00000389040 RWDD3Q9Y3V2 267 aa11.03□□□□□ -0.64
VPS53-202ENST00000389040 IPPQ9Y573 584 aa11.03□□□□□ -0.64
VPS53-202ENST00000389040 EFCAB8A8MWE9 144 aa11.02□□□□□ -0.65
VPS53-202ENST00000389040 PDXKO00764 312 aa11.02□□□□□ -0.65
VPS53-202ENST00000389040 ABLIM1O14639 778 aa11.02□□□□□ -0.65
VPS53-202ENST00000389040 CETN3O15182 167 aa11.02□□□□□ -0.65
VPS53-202ENST00000389040 EPHB6O15197 1021 aa11.02□□□□□ -0.65
VPS53-202ENST00000389040 TADA3O75528 432 aa11.02□□□□□ -0.65
VPS53-202ENST00000389040 ABL1P00519 1130 aa11.02□□□□□ -0.65
VPS53-202ENST00000389040 MYBP10242 640 aa11.02□□□□□ -0.65
VPS53-202ENST00000389040 YARSP54577 528 aaKnown RBP11.02□□□□□ -0.65
VPS53-202ENST00000389040 ADAM9Q13443 819 aa11.02□□□□□ -0.65
VPS53-202ENST00000389040 NFIL3Q16649 462 aa11.02□□□□□ -0.65
VPS53-202ENST00000389040 ZNF568Q3ZCX4 644 aa11.02□□□□□ -0.65
VPS53-202ENST00000389040 TRIM59Q8IWR1 403 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms