RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 IGLV2-11P01706 119 aa0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 GSPT1P15170 499 aaKnown RBP0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 DRD4P21917 467 aa0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 GARTP22102 1010 aa0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 HOXD9P28356 352 aaPredicted RBP0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 GLIPR1P48060 266 aa0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 SERPINB4P48594 390 aa0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 CCT8P50990 548 aa0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 HERVK_113P62684 666 aa0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 LRMPQ12912 555 aa0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 FLIIQ13045 1269 aa0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 CYP2A13Q16696 494 aa0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 ZNF718Q3SXZ3 478 aa0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 ZNF672Q499Z4 452 aaPredicted RBP0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 HABP4Q5JVS0 413 aaKnown RBP0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 VWA1Q6PCB0 445 aa0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 MEX3BQ6ZN04 569 aaKnown RBP0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 RAPH1Q70E73 1250 aa0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 PIP4P1Q86T03 277 aa0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 GTSCR1Q86UQ5 136 aa0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 RHOT2Q8IXI1 618 aa0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 ARFGAP1Q8N6T3 406 aa0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 PNLDC1Q8NA58 520 aaKnown RBP0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 RNF169Q8NCN4 708 aa0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 BVESQ8NE79 360 aa0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 ASB5Q8WWX0 329 aa0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 CLUAP1Q96AJ1 413 aa0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 NODALQ96S42 347 aa0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 ZSWIM1Q9BR11 485 aa0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 CCDC177Q9NQR7 707 aaPredicted RBP0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 KLHL11Q9NVR0 708 aa0.21□□□□□ -2.38
RNU6-540P-201ENST00000384622 TRGV11A0A075B6L2 103 aa0.2□□□□□ -2.38
RNU6-540P-201ENST00000384622 A0A1B0GTW7 788 aa0.2□□□□□ -2.38
RNU6-540P-201ENST00000384622 A0A1B0GUV1 79 aa0.2□□□□□ -2.38
RNU6-540P-201ENST00000384622 CYP19A1P11511 503 aaPredicted RBP0.2□□□□□ -2.38
RNU6-540P-201ENST00000384622 HNRNPLP14866 589 aaKnown RBP eCLIP0.2□□□□□ -2.38
RNU6-540P-201ENST00000384622 ZNF16P17020 682 aaPredicted RBP0.2□□□□□ -2.38
RNU6-540P-201ENST00000384622 HOXC12P31275 282 aa0.2□□□□□ -2.38
RNU6-540P-201ENST00000384622 ATP12AP54707 1039 aa0.2□□□□□ -2.38
RNU6-540P-201ENST00000384622 PWP1Q13610 501 aa0.2□□□□□ -2.38
RNU6-540P-201ENST00000384622 PTPRRQ15256 657 aa0.2□□□□□ -2.38
RNU6-540P-201ENST00000384622 TAF1CQ15572 869 aaPredicted RBP0.2□□□□□ -2.38
RNU6-540P-201ENST00000384622 LPAL2Q16609 132 aa0.2□□□□□ -2.38
RNU6-540P-201ENST00000384622 DGKDQ16760 1214 aa0.2□□□□□ -2.38
RNU6-540P-201ENST00000384622 KIAA1755Q5JYT7 1200 aa0.2□□□□□ -2.38
RNU6-540P-201ENST00000384622 FBXL19Q6PCT2 694 aa0.2□□□□□ -2.38
RNU6-540P-201ENST00000384622 P2RY8Q86VZ1 359 aa0.2□□□□□ -2.38
RNU6-540P-201ENST00000384622 ZZZ3Q8IYH5 903 aa0.2□□□□□ -2.38
RNU6-540P-201ENST00000384622 IFNL3Q8IZI9 196 aa0.2□□□□□ -2.38
RNU6-540P-201ENST00000384622 ZNF398Q8TD17 642 aa0.2□□□□□ -2.38
RNU6-540P-201ENST00000384622 ZFYVE19Q96K21 471 aa0.2□□□□□ -2.38
RNU6-540P-201ENST00000384622 ASB2Q96Q27 587 aa0.2□□□□□ -2.38
RNU6-540P-201ENST00000384622 TM9SF2Q99805 663 aa0.2□□□□□ -2.38
RNU6-540P-201ENST00000384622 MYLK2Q9H1R3 596 aa0.2□□□□□ -2.38
RNU6-540P-201ENST00000384622 SDF2L1Q9HCN8 221 aa0.2□□□□□ -2.38
RNU6-540P-201ENST00000384622 RPS10P5Q9NQ39 176 aa0.2□□□□□ -2.38
RNU6-540P-201ENST00000384622 MAGED2Q9UNF1 606 aaPredicted RBP0.2□□□□□ -2.38
RNU6-540P-201ENST00000384622 ZMYM2Q9UBW7 1377 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 ADAMTS9Q9P2N4 1935 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 PRAMEF22A3QJZ6 481 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 PYCARD-AS1I3L0S3 204 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 FZD9O00144 591 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 ERN1O75460 977 aaKnown RBP0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 GPANK1O95872 356 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 CHRM2P08172 466 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 KRTAP1-4P0C5Y4 121 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 PKMP14618 531 aaKnown RBP0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 GRK2P25098 689 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 GRK3P35626 688 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 ST13P50502 369 aaKnown RBP0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 CHN2P52757 468 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 SRSF1Q07955 248 aaKnown RBP eCLIP0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 KRT32Q14532 448 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 TXNRD1Q16881 649 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 PRSS53Q2L4Q9 553 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 ZNF484Q5JVG2 852 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 DSTYKQ6XUX3 929 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 TSHZ1Q6ZSZ6 1077 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 EP400NLQ6ZTU2 488 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 CHSY1Q86X52 802 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 TRIM59Q8IWR1 403 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 SLC34A3Q8N130 599 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 HIPK4Q8NE63 616 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 TOR1AIP2Q8NFQ8 470 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 SH3RF2Q8TEC5 729 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 TFAP2CQ92754 450 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 MIB2Q96AX9 1013 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 REPS1Q96D71 796 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 RNPEPQ9H4A4 650 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 SCRT2Q9NQ03 307 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 INTS7Q9NVH2 962 aaKnown RBP0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 ING3Q9NXR8 418 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 APEX2Q9UBZ4 518 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 DNAI1Q9UI46 699 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 KCNE5Q9UJ90 142 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 ATP23Q9Y6H3 246 aa0.19□□□□□ -2.38
RNU6-540P-201ENST00000384622 DENND3A2RUS2 1198 aa0.18□□□□□ -2.38
RNU6-540P-201ENST00000384622 TBKBP1A7MCY6 615 aa0.18□□□□□ -2.38
RNU6-540P-201ENST00000384622 KMT2DO14686 5537 aa0.18□□□□□ -2.38
RNU6-540P-201ENST00000384622 URI1O94763 535 aaPredicted RBP0.18□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms