RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 CNOT7Q9UIV1 285 aaKnown RBP20.87■□□□□ 0.93
SHROOM1-202ENST00000378676 CTNND1O60716 968 aaKnown RBP20.86■□□□□ 0.93
SHROOM1-202ENST00000378676 HNRNPH1P31943 449 aaKnown RBP20.86■□□□□ 0.93
SHROOM1-202ENST00000378676 GCNT1Q02742 428 aa20.86■□□□□ 0.93
SHROOM1-202ENST00000378676 ACTN3Q08043 901 aaPredicted RBP20.86■□□□□ 0.93
SHROOM1-202ENST00000378676 PPP1R7Q15435 360 aa20.86■□□□□ 0.93
SHROOM1-202ENST00000378676 DAB2IPQ5VWQ8 1189 aa20.86■□□□□ 0.93
SHROOM1-202ENST00000378676 SWSAP1Q6NVH7 229 aa20.86■□□□□ 0.93
SHROOM1-202ENST00000378676 C15orf39Q6ZRI6 1047 aa20.86■□□□□ 0.93
SHROOM1-202ENST00000378676 CCDC60Q8IWA6 550 aaPredicted RBP20.86■□□□□ 0.93
SHROOM1-202ENST00000378676 MCOLN2Q8IZK6 566 aa20.86■□□□□ 0.93
SHROOM1-202ENST00000378676 CENPTQ96BT3 561 aa20.86■□□□□ 0.93
SHROOM1-202ENST00000378676 GPRASP2Q96D09 838 aa20.86■□□□□ 0.93
SHROOM1-202ENST00000378676 BICD1Q96G01 975 aa20.86■□□□□ 0.93
SHROOM1-202ENST00000378676 RUNDC3BQ96NL0 473 aa20.86■□□□□ 0.93
SHROOM1-202ENST00000378676 AAASQ9NRG9 546 aa20.86■□□□□ 0.93
SHROOM1-202ENST00000378676 RARGP13631 454 aa20.86■□□□□ 0.93
SHROOM1-202ENST00000378676 RRM1P23921 792 aa20.86■□□□□ 0.93
SHROOM1-202ENST00000378676 ADCY2Q08462 1091 aa20.86■□□□□ 0.93
SHROOM1-202ENST00000378676 SGO2Q562F6 1265 aa20.86■□□□□ 0.93
SHROOM1-202ENST00000378676 OTUD6AQ7L8S5 288 aa20.86■□□□□ 0.93
SHROOM1-202ENST00000378676 CPA5Q8WXQ8 436 aa20.86■□□□□ 0.93
SHROOM1-202ENST00000378676 GARTP22102 1010 aa20.85■□□□□ 0.93
SHROOM1-202ENST00000378676 PRKCEQ02156 737 aa20.85■□□□□ 0.93
SHROOM1-202ENST00000378676 SLMAPQ14BN4 828 aa20.85■□□□□ 0.93
SHROOM1-202ENST00000378676 CCDC13Q8IYE1 715 aa20.85■□□□□ 0.93
SHROOM1-202ENST00000378676 CACNA2D3Q8IZS8 1091 aa20.85■□□□□ 0.93
SHROOM1-202ENST00000378676 DDX23Q9BUQ8 820 aaKnown RBP20.85■□□□□ 0.93
SHROOM1-202ENST00000378676 TMEM109Q9BVC6 243 aa20.85■□□□□ 0.93
SHROOM1-202ENST00000378676 POLR3FQ9H1D9 316 aaPredicted RBP20.85■□□□□ 0.93
SHROOM1-202ENST00000378676 C17orf75Q9HAS0 396 aa20.85■□□□□ 0.93
SHROOM1-202ENST00000378676 C1orf112Q9NSG2 853 aa20.85■□□□□ 0.93
SHROOM1-202ENST00000378676 PTPRJQ12913 1337 aa20.85■□□□□ 0.93
SHROOM1-202ENST00000378676 H0YHG0 523 aa20.85■□□□□ 0.93
SHROOM1-202ENST00000378676 ZNF568Q3ZCX4 644 aa20.85■□□□□ 0.93
SHROOM1-202ENST00000378676 CIAPIN1Q6FI81 312 aa20.85■□□□□ 0.93
SHROOM1-202ENST00000378676 SPOPLQ6IQ16 392 aa20.85■□□□□ 0.93
SHROOM1-202ENST00000378676 ATP6V0A1Q93050 837 aa20.85■□□□□ 0.93
SHROOM1-202ENST00000378676 CHMP6Q96FZ7 201 aa20.85■□□□□ 0.93
SHROOM1-202ENST00000378676 CABS1Q96KC9 395 aa20.85■□□□□ 0.93
SHROOM1-202ENST00000378676 ZNF317Q96PQ6 595 aaPredicted RBP20.85■□□□□ 0.93
SHROOM1-202ENST00000378676 CDC42EP4Q9H3Q1 356 aaKnown RBP20.85■□□□□ 0.93
SHROOM1-202ENST00000378676 ARHGAP28Q9P2N2 729 aa20.85■□□□□ 0.93
SHROOM1-202ENST00000378676 O00370 1275 aa20.84■□□□□ 0.93
SHROOM1-202ENST00000378676 AGTP01019 485 aa20.84■□□□□ 0.93
SHROOM1-202ENST00000378676 SCP2P22307 547 aa20.84■□□□□ 0.93
SHROOM1-202ENST00000378676 CHKAP35790 457 aa20.84■□□□□ 0.93
SHROOM1-202ENST00000378676 CDR1P51861 262 aa20.84■□□□□ 0.93
SHROOM1-202ENST00000378676 AUHQ13825 339 aaKnown RBP20.84■□□□□ 0.93
SHROOM1-202ENST00000378676 C6orf118Q5T5N4 469 aa20.84■□□□□ 0.93
SHROOM1-202ENST00000378676 CCDC121Q6ZUS5 278 aa20.84■□□□□ 0.93
SHROOM1-202ENST00000378676 CPLX4Q7Z7G2 160 aa20.84■□□□□ 0.93
SHROOM1-202ENST00000378676 REPS2Q8NFH8 660 aa20.84■□□□□ 0.93
SHROOM1-202ENST00000378676 SLCO2A1Q92959 643 aa20.84■□□□□ 0.93
SHROOM1-202ENST00000378676 JPH2Q9BR39 696 aaPredicted RBP20.84■□□□□ 0.93
SHROOM1-202ENST00000378676 TAOK3Q9H2K8 898 aa20.84■□□□□ 0.93
SHROOM1-202ENST00000378676 DGAT1O75907 488 aa20.83■□□□□ 0.93
SHROOM1-202ENST00000378676 CFHP08603 1231 aa20.83■□□□□ 0.93
SHROOM1-202ENST00000378676 CCDC38Q502W7 563 aa20.83■□□□□ 0.93
SHROOM1-202ENST00000378676 BRDTQ58F21 947 aaPredicted RBP20.83■□□□□ 0.93
SHROOM1-202ENST00000378676 TNFAIP8L3Q5GJ75 292 aa20.83■□□□□ 0.93
SHROOM1-202ENST00000378676 SNRNP48Q6IEG0 339 aaKnown RBP20.83■□□□□ 0.93
SHROOM1-202ENST00000378676 USP37Q86T82 979 aa20.83■□□□□ 0.93
SHROOM1-202ENST00000378676 AVENQ9NQS1 362 aaPredicted RBP20.83■□□□□ 0.93
SHROOM1-202ENST00000378676 CYP26B1Q9NR63 512 aa20.83■□□□□ 0.93
SHROOM1-202ENST00000378676 LOC285556D6RIA3 1793 aa20.83■□□□□ 0.93
SHROOM1-202ENST00000378676 CALCOCO2Q13137 446 aa20.83■□□□□ 0.93
SHROOM1-202ENST00000378676 GKAP1Q5VSY0 366 aaPredicted RBP20.83■□□□□ 0.93
SHROOM1-202ENST00000378676 TDRD10Q5VZ19 366 aaKnown RBP20.83■□□□□ 0.93
SHROOM1-202ENST00000378676 XRRA1Q6P2D8 792 aa20.83■□□□□ 0.93
SHROOM1-202ENST00000378676 RHBDF2Q6PJF5 856 aa20.83■□□□□ 0.93
SHROOM1-202ENST00000378676 ENOSF1Q7L5Y1 443 aa20.83■□□□□ 0.93
SHROOM1-202ENST00000378676 SUGP1Q8IWZ8 645 aaKnown RBP20.83■□□□□ 0.93
SHROOM1-202ENST00000378676 MCPH1Q8NEM0 835 aa20.83■□□□□ 0.93
SHROOM1-202ENST00000378676 MTFR1LQ9H019 292 aa20.83■□□□□ 0.93
SHROOM1-202ENST00000378676 ATP6V0A4Q9HBG4 840 aa20.83■□□□□ 0.93
SHROOM1-202ENST00000378676 R3HDM2Q9Y2K5 976 aaKnown RBP20.83■□□□□ 0.93
SHROOM1-202ENST00000378676 DNM1LO00429 736 aa20.82■□□□□ 0.92
SHROOM1-202ENST00000378676 RASGRF2O14827 1237 aa20.82■□□□□ 0.92
SHROOM1-202ENST00000378676 ZC3H11AO75152 810 aaKnown RBP eCLIP20.82■□□□□ 0.92
SHROOM1-202ENST00000378676 HLA-DRAP01903 254 aa20.82■□□□□ 0.92
SHROOM1-202ENST00000378676 PSAPP07602 524 aa20.82■□□□□ 0.92
SHROOM1-202ENST00000378676 SSTR3P32745 418 aaPredicted RBP20.82■□□□□ 0.92
SHROOM1-202ENST00000378676 NLRP11P59045 1033 aaKnown RBP20.82■□□□□ 0.92
SHROOM1-202ENST00000378676 MTERF2Q49AM1 385 aa20.82■□□□□ 0.92
SHROOM1-202ENST00000378676 DDX27Q96GQ7 796 aaKnown RBP20.82■□□□□ 0.92
SHROOM1-202ENST00000378676 NCAPGQ9BPX3 1015 aa20.82■□□□□ 0.92
SHROOM1-202ENST00000378676 HAPLN2Q9GZV7 340 aa20.82■□□□□ 0.92
SHROOM1-202ENST00000378676 JPH1Q9HDC5 661 aaPredicted RBP20.82■□□□□ 0.92
SHROOM1-202ENST00000378676 ASIC3Q9UHC3 531 aa20.82■□□□□ 0.92
SHROOM1-202ENST00000378676 UMODL1Q5DID0 1318 aa20.82■□□□□ 0.92
SHROOM1-202ENST00000378676 ACTR2P61160 394 aa20.82■□□□□ 0.92
SHROOM1-202ENST00000378676 TRIP13Q15645 432 aaPredicted RBP20.82■□□□□ 0.92
SHROOM1-202ENST00000378676 ANKRD20A8PQ5CZ79 823 aa20.82■□□□□ 0.92
SHROOM1-202ENST00000378676 ARMC9Q7Z3E5 817 aa20.82■□□□□ 0.92
SHROOM1-202ENST00000378676 VPS33BQ9H267 617 aa20.82■□□□□ 0.92
SHROOM1-202ENST00000378676 WHRNQ9P202 907 aa20.82■□□□□ 0.92
SHROOM1-202ENST00000378676 EXTL3O43909 919 aa20.81■□□□□ 0.92
SHROOM1-202ENST00000378676 VNN1O95497 513 aa20.81■□□□□ 0.92
SHROOM1-202ENST00000378676 ACSL3O95573 720 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms