RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 RABL2BQ9UNT1 228 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 ROBO3Q96MS0 1386 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 HECW2Q9P2P5 1572 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 USP17L3A6NCW0 530 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 USP17L4A6NCW7 530 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 C21orf2O43822 256 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 SLC25A27O95847 323 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 USP17L1Q7RTZ2 530 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 SEC14L1Q92503 715 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 PRKD2Q9BZL6 878 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 ZNF180Q9UJW8 692 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 CNTNAP4Q9C0A0 1308 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 SDR42E2A6NKP2 422 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 BCAMP50895 628 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 OCRLQ01968 901 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 ICA1LQ8NDH6 482 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 U2AF1L4Q8WU68 220 aaKnown RBP5.21□□□□□ -1.58
PCDH9-201ENST00000377861 NSUN4Q96CB9 384 aaKnown RBP5.21□□□□□ -1.58
PCDH9-201ENST00000377861 CASP7P55210 303 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 SLFN11Q7Z7L1 901 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 GCNT4Q9P109 453 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 C15orf38-AP3S2A0A0A6YYH1 394 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 GDF11O95390 407 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 SYDE2Q5VT97 1194 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 ARPINQ7Z6K5 226 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 PBXIP1Q96AQ6 731 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 AGBL3Q8NEM8 1001 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 TBRG4Q969Z0 631 aaKnown RBP eCLIP5.21□□□□□ -1.58
PCDH9-201ENST00000377861 DMAP1Q9NPF5 467 aaPredicted RBP5.21□□□□□ -1.58
PCDH9-201ENST00000377861 PKD2L2Q9NZM6 624 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 TEKT2Q9UIF3 430 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 ASB14A6NK59 587 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 LRRC42Q9Y546 428 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 XPO1O14980 1071 aaKnown RBP5.21□□□□□ -1.58
PCDH9-201ENST00000377861 ACAD10Q6JQN1 1059 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 C16orf89Q6UX73 402 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 RSL24D1Q9UHA3 163 aaKnown RBP5.21□□□□□ -1.58
PCDH9-201ENST00000377861 FRMPD4Q14CM0 1322 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 STAT3P40763 770 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 LIG4P49917 911 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 IER5Q5VY09 327 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 FASTKD5Q7L8L6 764 aaKnown RBP5.21□□□□□ -1.58
PCDH9-201ENST00000377861 SCFD2Q8WU76 684 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 TRAPPC9Q96Q05 1148 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 GOLPH3Q9H4A6 298 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 SNTNA6NMZ2 147 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 OPHN1O60890 802 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 RGS2P41220 211 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 OTUD7BQ6GQQ9 843 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 SLC35G2Q8TBE7 412 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 AGPAT1Q99943 283 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 ABCA9Q8IUA7 1624 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 ARHGAP42A6NI28 874 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 ASAP3Q8TDY4 903 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 NLRP4Q96MN2 994 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 MRPL4Q9BYD3 311 aaKnown RBP5.21□□□□□ -1.58
PCDH9-201ENST00000377861 RANBP17Q9H2T7 1088 aaKnown RBP5.21□□□□□ -1.58
PCDH9-201ENST00000377861 PSMC3IPQ9P2W1 217 aaPredicted RBP5.21□□□□□ -1.58
PCDH9-201ENST00000377861 PFDN1O60925 122 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 PTPN4P29074 926 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 STX1BP61266 288 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 TFDP3Q5H9I0 405 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 DNERQ8NFT8 737 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 GIPC2Q8TF65 315 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 TOP1MTQ969P6 601 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 LRRC2Q9BYS8 371 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 CCDC78A2IDD5 438 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 FSCN2O14926 492 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 ZNF609O15014 1411 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 SRGAP2CP0DJJ0 459 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 SPRP35270 261 aaPredicted RBP5.21□□□□□ -1.58
PCDH9-201ENST00000377861 STX17P56962 302 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 ANO4Q32M45 955 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 GLI1P08151 1106 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 MCAMP43121 646 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 ST3GAL1Q11201 340 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 RFX4Q33E94 735 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 TAF1BQ53T94 588 aaPredicted RBP5.21□□□□□ -1.58
PCDH9-201ENST00000377861 GANQ9H2C0 597 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 OGNP20774 298 aaKnown RBP5.21□□□□□ -1.58
PCDH9-201ENST00000377861 TADA1Q96BN2 335 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 A0A1B0GW55 424 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 DUX4L2P0CJ85 424 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 DUX4L3P0CJ86 424 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 DUX4L4P0CJ87 422 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 DUX4L5P0CJ88 424 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 DUX4L6P0CJ89 424 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 DUX4L7P0CJ90 424 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 CUL3Q13618 768 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 SPIDRQ14159 915 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 INTS6LQ5JSJ4 861 aaKnown RBP5.21□□□□□ -1.58
PCDH9-201ENST00000377861 SLC26A11Q86WA9 606 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 C18orf8Q96DM3 657 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 TSPYL2Q9H2G4 693 aaPredicted RBP5.21□□□□□ -1.58
PCDH9-201ENST00000377861 DUX4Q9UBX2 424 aa5.21□□□□□ -1.58
PCDH9-201ENST00000377861 STARD8Q92502 1023 aa5.2□□□□□ -1.58
PCDH9-201ENST00000377861 SOWAHDA6NJG2 315 aa5.2□□□□□ -1.58
PCDH9-201ENST00000377861 DCAF17Q5H9S7 520 aaPredicted RBP5.2□□□□□ -1.58
PCDH9-201ENST00000377861 PRPF31Q8WWY3 499 aaKnown RBP5.2□□□□□ -1.58
PCDH9-201ENST00000377861 UBA2Q9UBT2 640 aaPredicted RBP5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms