RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 RNPEPQ9H4A4 650 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 DHX35Q9H5Z1 703 aaKnown RBP11.17□□□□□ -0.62
RTN3-206ENST00000377819 CNGB3Q9NQW8 809 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 ATP7AQ04656 1500 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 FLT4P35916 1363 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 E9PBE3 544 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 A1BGP04217 495 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 RAD23BP54727 409 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 HDLBPQ00341 1268 aaKnown RBP11.17□□□□□ -0.62
RTN3-206ENST00000377819 TMEM154Q6P9G4 183 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 LRRC49Q8IUZ0 686 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 DNAJC10Q8IXB1 793 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 QKIQ96PU8 341 aaKnown RBP eCLIP11.17□□□□□ -0.621e-6■■■□□ 15.5
RTN3-206ENST00000377819 FAM167BQ9BTA0 163 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 ATP6V1HQ9UI12 483 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 PSMD3O43242 534 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 PIK3R1P27986 724 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 PSMC6P62333 389 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 TRIM16LQ309B1 348 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 IKBIPQ70UQ0 350 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 CMTM5Q96DZ9 223 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 RMND5BQ96G75 393 aaPredicted RBP11.17□□□□□ -0.62
RTN3-206ENST00000377819 CARD14Q9BXL6 1004 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 UBXN6Q9BZV1 441 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 SENP2Q9HC62 589 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 AKAP7Q9P0M2 348 aaPredicted RBP11.17□□□□□ -0.62
RTN3-206ENST00000377819 CTNNAL1Q9UBT7 734 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 SLC9A2Q9UBY0 812 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 PCSK1NQ9UHG2 260 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 EFCAB6Q5THR3 1501 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 RRM2P31350 389 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 PGM1P36871 562 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 PHKA1P46020 1223 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 HNMTP50135 292 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 EIF4A2Q14240 407 aaKnown RBP11.16□□□□□ -0.62
RTN3-206ENST00000377819 RCN1Q15293 331 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 SPATA2LQ8IUW3 424 aaPredicted RBP11.16□□□□□ -0.62
RTN3-206ENST00000377819 LRRC8AQ8IWT6 810 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 CMTR1Q8N1G2 835 aaKnown RBP11.16□□□□□ -0.62
RTN3-206ENST00000377819 UCMAQ8WVF2 138 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 ZNF560Q96MR9 790 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 MXD3Q9BW11 206 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 HEMGNQ9BXL5 484 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 STK33Q9BYT3 514 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 EIF2AK2P19525 551 aaKnown RBP11.16□□□□□ -0.62
RTN3-206ENST00000377819 SOX6P35712 828 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 NPEPPSP55786 919 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 PEX3P56589 373 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 PURAQ00577 322 aaKnown RBP11.16□□□□□ -0.62
RTN3-206ENST00000377819 CYP27A1Q02318 531 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 FAM98CQ17RN3 349 aaKnown RBP11.16□□□□□ -0.62
RTN3-206ENST00000377819 MFSD14CQ5VZR4 134 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 HAUS6Q7Z4H7 955 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 CCDC60Q8IWA6 550 aaPredicted RBP11.16□□□□□ -0.62
RTN3-206ENST00000377819 HS6ST3Q8IZP7 471 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 CYGBQ8WWM9 190 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 AP1M1Q9BXS5 423 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 C2orf40Q9H1Z8 148 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 TTC7AQ9ULT0 858 aaPredicted RBP11.16□□□□□ -0.62
RTN3-206ENST00000377819 MYOM1P52179 1685 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 ALBP02768 609 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 ATP5JP18859 108 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 STX4Q12846 297 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 RALGDSQ12967 914 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 TCEAL5Q5H9L2 206 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 C11orf96Q7Z7L8 435 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 CDK20Q8IZL9 346 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 ZSCAN18Q8TBC5 510 aaPredicted RBP11.16□□□□□ -0.62
RTN3-206ENST00000377819 EPS8L2Q9H6S3 715 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 SLC24A3Q9HC58 644 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 BABAM1Q9NWV8 329 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.16□□□□□ -0.62
RTN3-206ENST00000377819 CLTCL1P53675 1640 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 A8MXQ7 604 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 VAMP4O75379 141 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 MFN2O95140 757 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 TBXAS1P24557 533 aaPredicted RBP11.16□□□□□ -0.62
RTN3-206ENST00000377819 GPR1P46091 355 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 TTLL9Q3SXZ7 439 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 UXS1Q8NBZ7 420 aa11.16□□□□□ -0.62
RTN3-206ENST00000377819 CCDC195A0A1B0GUA6 201 aa11.15□□□□□ -0.62
RTN3-206ENST00000377819 CFAP73A6NFT4 308 aa11.15□□□□□ -0.62
RTN3-206ENST00000377819 PPP6R2O75170 966 aa11.15□□□□□ -0.62
RTN3-206ENST00000377819 ENO3P13929 434 aaPredicted RBP11.15□□□□□ -0.62
RTN3-206ENST00000377819 KPNA1P52294 538 aaPredicted RBP11.15□□□□□ -0.62
RTN3-206ENST00000377819 KCNQ4P56696 695 aa11.15□□□□□ -0.62
RTN3-206ENST00000377819 C1orf131Q8NDD1 294 aaKnown RBP11.15□□□□□ -0.62
RTN3-206ENST00000377819 RIN3Q8TB24 985 aa11.15□□□□□ -0.62
RTN3-206ENST00000377819 SMAD5Q99717 465 aaKnown RBP11.15□□□□□ -0.62
RTN3-206ENST00000377819 USP44Q9H0E7 712 aa11.15□□□□□ -0.62
RTN3-206ENST00000377819 UBA2Q9UBT2 640 aaPredicted RBP11.15□□□□□ -0.62
RTN3-206ENST00000377819 ADAM21Q9UKJ8 722 aa11.15□□□□□ -0.62
RTN3-206ENST00000377819 LMTK3Q96Q04 1460 aa11.15□□□□□ -0.62
RTN3-206ENST00000377819 HEATR9A2RTY3 570 aa11.15□□□□□ -0.62
RTN3-206ENST00000377819 ASB14A6NK59 587 aa11.15□□□□□ -0.62
RTN3-206ENST00000377819 CDC40O60508 579 aaKnown RBP eCLIP11.15□□□□□ -0.62
RTN3-206ENST00000377819 DLGAP3O95886 979 aa11.15□□□□□ -0.62
RTN3-206ENST00000377819 MZF1P28698 734 aaPredicted RBP11.15□□□□□ -0.62
RTN3-206ENST00000377819 LRRC63Q05C16 580 aa11.15□□□□□ -0.62
RTN3-206ENST00000377819 NME3Q13232 169 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms