RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 FAM47EQ6ZV65 393 aa22.53■■□□□ 1.2
UPF3A-202ENST00000375299 ANKRD35Q8N283 1001 aa22.53■■□□□ 1.2
UPF3A-202ENST00000375299 KCNV2Q8TDN2 545 aa22.53■■□□□ 1.2
UPF3A-202ENST00000375299 CCDC77Q9BR77 488 aa22.53■■□□□ 1.2
UPF3A-202ENST00000375299 LXNQ9BS40 222 aa22.53■■□□□ 1.2
UPF3A-202ENST00000375299 ANKRD31Q8N7Z5 1873 aa22.53■■□□□ 1.2
UPF3A-202ENST00000375299 BMP3P12645 472 aa22.53■■□□□ 1.2
UPF3A-202ENST00000375299 TMEM179Q6ZVK1 233 aa22.53■■□□□ 1.2
UPF3A-202ENST00000375299 XXYLT1Q8NBI6 393 aa22.53■■□□□ 1.2
UPF3A-202ENST00000375299 HSPBP1Q9NZL4 362 aa22.53■■□□□ 1.2
UPF3A-202ENST00000375299 STARD13Q9Y3M8 1113 aa22.53■■□□□ 1.2
UPF3A-202ENST00000375299 PMM2O15305 246 aa22.52■■□□□ 1.2
UPF3A-202ENST00000375299 ALCAMQ13740 583 aa22.52■■□□□ 1.2
UPF3A-202ENST00000375299 SETDB1Q15047 1291 aa22.52■■□□□ 1.2
UPF3A-202ENST00000375299 ACAD10Q6JQN1 1059 aa22.52■■□□□ 1.2
UPF3A-202ENST00000375299 KIAA0825Q8IV33 1275 aa22.52■■□□□ 1.2
UPF3A-202ENST00000375299 ARMC2Q8NEN0 867 aa22.52■■□□□ 1.2
UPF3A-202ENST00000375299 ATL2Q8NHH9 583 aa22.52■■□□□ 1.2
UPF3A-202ENST00000375299 ACCSQ96QU6 501 aa22.52■■□□□ 1.2
UPF3A-202ENST00000375299 HERPUD2Q9BSE4 406 aa22.52■■□□□ 1.2
UPF3A-202ENST00000375299 WDR11Q9BZH6 1224 aa22.52■■□□□ 1.2
UPF3A-202ENST00000375299 DDTLA6NHG4 134 aaPredicted RBP22.52■■□□□ 1.19
UPF3A-202ENST00000375299 FAM47DPA6NHR8 397 aa22.52■■□□□ 1.19
UPF3A-202ENST00000375299 CRKP46108 304 aa22.52■■□□□ 1.19
UPF3A-202ENST00000375299 VPS41P49754 854 aa22.52■■□□□ 1.19
UPF3A-202ENST00000375299 WDR4P57081 412 aaKnown RBP22.52■■□□□ 1.19
UPF3A-202ENST00000375299 TCP10Q12799 353 aa22.52■■□□□ 1.19
UPF3A-202ENST00000375299 TMEM63BQ5T3F8 832 aa22.52■■□□□ 1.19
UPF3A-202ENST00000375299 VSIG1Q86XK7 387 aa22.52■■□□□ 1.19
UPF3A-202ENST00000375299 AGGF1Q8N302 714 aaeCLIP22.52■■□□□ 1.19
UPF3A-202ENST00000375299 RIBC1Q8N443 379 aaPredicted RBP22.52■■□□□ 1.19
UPF3A-202ENST00000375299 ZSWIM2Q8NEG5 633 aa22.52■■□□□ 1.19
UPF3A-202ENST00000375299 ERP27Q96DN0 273 aa22.52■■□□□ 1.19
UPF3A-202ENST00000375299 NAF1Q96HR8 494 aaKnown RBP22.52■■□□□ 1.19
UPF3A-202ENST00000375299 ANAPC7Q9UJX3 599 aa22.52■■□□□ 1.19
UPF3A-202ENST00000375299 RASA4BC9J798 803 aa22.51■■□□□ 1.19
UPF3A-202ENST00000375299 KIF3CO14782 793 aa22.51■■□□□ 1.19
UPF3A-202ENST00000375299 RASA4O43374 803 aa22.51■■□□□ 1.19
UPF3A-202ENST00000375299 GNAZP19086 355 aa22.51■■□□□ 1.19
UPF3A-202ENST00000375299 MAPK4P31152 587 aa22.51■■□□□ 1.19
UPF3A-202ENST00000375299 ABL2P42684 1182 aa22.51■■□□□ 1.19
UPF3A-202ENST00000375299 YARSP54577 528 aaKnown RBP22.51■■□□□ 1.19
UPF3A-202ENST00000375299 TMED2Q15363 201 aa22.51■■□□□ 1.19
UPF3A-202ENST00000375299 RELL1Q8IUW5 271 aa22.51■■□□□ 1.19
UPF3A-202ENST00000375299 RNPEPL1Q9HAU8 725 aa22.51■■□□□ 1.19
UPF3A-202ENST00000375299 LARSQ9P2J5 1176 aaKnown RBP22.51■■□□□ 1.19
UPF3A-202ENST00000375299 PI4KBQ9UBF8 816 aa22.51■■□□□ 1.19
UPF3A-202ENST00000375299 NKX1-2Q9UD57 310 aaPredicted RBP22.51■■□□□ 1.19
UPF3A-202ENST00000375299 MAPK13O15264 365 aa22.5■■□□□ 1.19
UPF3A-202ENST00000375299 MAGEB2O15479 319 aa22.5■■□□□ 1.19
UPF3A-202ENST00000375299 CFBP00751 764 aa22.5■■□□□ 1.19
UPF3A-202ENST00000375299 MAPTP10636 758 aaKnown RBP22.5■■□□□ 1.19
UPF3A-202ENST00000375299 TATDN1Q6P1N9 297 aa22.5■■□□□ 1.19
UPF3A-202ENST00000375299 PADI6Q6TGC4 694 aa22.5■■□□□ 1.19
UPF3A-202ENST00000375299 MAEAQ7L5Y9 396 aa22.5■■□□□ 1.19
UPF3A-202ENST00000375299 BBOF1Q8ND07 529 aa22.5■■□□□ 1.19
UPF3A-202ENST00000375299 ZNF577Q9BSK1 485 aa22.5■■□□□ 1.19
UPF3A-202ENST00000375299 PRR12Q9ULL5 1215 aa22.5■■□□□ 1.19
UPF3A-202ENST00000375299 NEU2Q9Y3R4 380 aa22.5■■□□□ 1.19
UPF3A-202ENST00000375299 USH1CQ9Y6N9 552 aa22.5■■□□□ 1.19
UPF3A-202ENST00000375299 GDF11O95390 407 aa22.5■■□□□ 1.19
UPF3A-202ENST00000375299 ASMTLO95671 621 aa22.5■■□□□ 1.19
UPF3A-202ENST00000375299 RRM1P23921 792 aa22.5■■□□□ 1.19
UPF3A-202ENST00000375299 CACNB3P54284 484 aa22.5■■□□□ 1.19
UPF3A-202ENST00000375299 UBXN2AP68543 259 aa22.5■■□□□ 1.19
UPF3A-202ENST00000375299 CENPCQ03188 943 aa22.5■■□□□ 1.19
UPF3A-202ENST00000375299 C9orf72Q96LT7 481 aa22.5■■□□□ 1.19
UPF3A-202ENST00000375299 PAIP2Q9BPZ3 127 aaKnown RBP22.5■■□□□ 1.19
UPF3A-202ENST00000375299 TEKT3Q9BXF9 490 aa22.5■■□□□ 1.19
UPF3A-202ENST00000375299 CHKBQ9Y259 395 aa22.5■■□□□ 1.19
UPF3A-202ENST00000375299 R3HDM2Q9Y2K5 976 aaKnown RBP22.5■■□□□ 1.19
UPF3A-202ENST00000375299 PEX11AO75192 247 aa22.49■■□□□ 1.19
UPF3A-202ENST00000375299 TEX9Q8N6V9 391 aa22.49■■□□□ 1.19
UPF3A-202ENST00000375299 DDX1Q92499 740 aaKnown RBP22.49■■□□□ 1.19
UPF3A-202ENST00000375299 MAML1Q92585 1016 aa22.49■■□□□ 1.19
UPF3A-202ENST00000375299 INPP5DQ92835 1189 aa22.49■■□□□ 1.19
UPF3A-202ENST00000375299 SEMA4DQ92854 862 aa22.49■■□□□ 1.19
UPF3A-202ENST00000375299 ZDHHC15Q96MV8 337 aa22.49■■□□□ 1.19
UPF3A-202ENST00000375299 E7ENQ6 273 aa22.49■■□□□ 1.19
UPF3A-202ENST00000375299 G3V3G9 751 aa22.49■■□□□ 1.19
UPF3A-202ENST00000375299 CALB2P22676 271 aa22.49■■□□□ 1.19
UPF3A-202ENST00000375299 CEP55Q53EZ4 464 aa22.49■■□□□ 1.19
UPF3A-202ENST00000375299 DCAF8Q5TAQ9 597 aa22.49■■□□□ 1.19
UPF3A-202ENST00000375299 IZUMO3Q5VZ72 239 aa22.49■■□□□ 1.19
UPF3A-202ENST00000375299 B3GNT9Q6UX72 402 aa22.49■■□□□ 1.19
UPF3A-202ENST00000375299 TMEM237Q96Q45 408 aa22.49■■□□□ 1.19
UPF3A-202ENST00000375299 FAM167BQ9BTA0 163 aa22.49■■□□□ 1.19
UPF3A-202ENST00000375299 PHTF1Q9UMS5 762 aa22.49■■□□□ 1.19
UPF3A-202ENST00000375299 PCDHAC2Q9Y5I4 1007 aa22.49■■□□□ 1.19
UPF3A-202ENST00000375299 A0A1W2PRG0 241 aa22.48■■□□□ 1.19
UPF3A-202ENST00000375299 A6NHS1 94 aa22.48■■□□□ 1.19
UPF3A-202ENST00000375299 ADRB2P07550 413 aa22.48■■□□□ 1.19
UPF3A-202ENST00000375299 ABHD2P08910 425 aa22.48■■□□□ 1.19
UPF3A-202ENST00000375299 ARP10275 920 aa22.48■■□□□ 1.19
UPF3A-202ENST00000375299 NPR1P16066 1061 aa22.48■■□□□ 1.19
UPF3A-202ENST00000375299 TARSP26639 723 aaKnown RBP22.48■■□□□ 1.19
UPF3A-202ENST00000375299 MOGSQ13724 837 aa22.48■■□□□ 1.19
UPF3A-202ENST00000375299 ABCB5Q2M3G0 1257 aa22.48■■□□□ 1.19
UPF3A-202ENST00000375299 KIFAP3Q92845 792 aa22.48■■□□□ 1.19
UPF3A-202ENST00000375299 SAAL1Q96ER3 474 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms