RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 COG8Q96MW5 612 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 LENG8Q96PV6 779 aaPredicted RBP4.27□□□□□ -1.73
MCF2-203ENST00000370576 SMAD5Q99717 465 aaKnown RBP4.27□□□□□ -1.73
MCF2-203ENST00000370576 TEX13BQ9BXU2 312 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 EDEM3Q9BZQ6 932 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 PDCL3Q9H2J4 239 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 TMEM60Q9H2L4 133 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 MED4Q9NPJ6 270 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 CNNM1Q9NRU3 951 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 SALL4Q9UJQ4 1053 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 MYH11P35749 1972 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 K7EPI3 171 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 FMO6PO60774 539 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 RNGTTO60942 597 aaKnown RBP4.27□□□□□ -1.73
MCF2-203ENST00000370576 PALMO75781 387 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 STAM2O75886 525 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 MBD3O95983 291 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 OPN1MWP04001 364 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 OPN1MW2P0DN77 364 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 OPN1MW3P0DN78 364 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 GJB2P29033 226 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 ASMTP46597 345 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 ENPEPQ07075 957 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 MRPL28Q13084 256 aaKnown RBP4.27□□□□□ -1.73
MCF2-203ENST00000370576 CLPPQ16740 277 aaPredicted RBP4.27□□□□□ -1.73
MCF2-203ENST00000370576 FILIP1LQ4L180 1135 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 C4orf50Q6ZRC1 276 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 FAM178BQ8IXR5 827 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 REXO1Q8N1G1 1221 aaKnown RBP4.27□□□□□ -1.73
MCF2-203ENST00000370576 DCLK2Q8N568 766 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 LINC00301Q8NCQ3 95 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 FBXO30Q8TB52 745 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 ADAMTS15Q8TE58 950 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 KIAA1191Q96A73 305 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 OTUD5Q96G74 571 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 FAM81BQ96LP2 452 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 EYA3Q99504 573 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 TSEN34Q9BSV6 310 aaKnown RBP4.27□□□□□ -1.73
MCF2-203ENST00000370576 TSR3Q9UJK0 312 aaKnown RBP4.27□□□□□ -1.73
MCF2-203ENST00000370576 DOLKQ9UPQ8 538 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 PCDHGB5Q9Y5G0 923 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 KIF28PB7ZC32 967 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 LETM1O95202 739 aaPredicted RBP4.27□□□□□ -1.73
MCF2-203ENST00000370576 KIF20AO95235 890 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 ATE1O95260 518 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 HSPA4LO95757 839 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 CAVIN2O95810 425 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 CIITAP33076 1130 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 RECQLP46063 649 aaPredicted RBP4.27□□□□□ -1.73
MCF2-203ENST00000370576 KCNJ6P48051 423 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 GSK3AP49840 483 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 NKX3-2P78367 333 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 CCDC122Q5T0U0 273 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 OTUD7BQ6GQQ9 843 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 CCDC149Q6ZUS6 474 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 DENND5BQ6ZUT9 1274 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 SH3RF3Q8TEJ3 882 aaPredicted RBP4.27□□□□□ -1.73
MCF2-203ENST00000370576 ARHGEF2Q92974 986 aaKnown RBP4.27□□□□□ -1.73
MCF2-203ENST00000370576 RILPL2Q969X0 211 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 DECR2Q9NUI1 292 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 TBC1D29Q9UFV1 150 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 L1RE1Q9UN81 338 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 CHTOPQ9Y3Y2 248 aaKnown RBP4.27□□□□□ -1.73
MCF2-203ENST00000370576 ZNF711Q9Y462 761 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 MYPNQ86TC9 1320 aa4.27□□□□□ -1.73
MCF2-203ENST00000370576 FRMD3A2A2Y4 597 aa4.26□□□□□ -1.73
MCF2-203ENST00000370576 MEIS3P2A8K0S8 358 aa4.26□□□□□ -1.73
MCF2-203ENST00000370576 IQCJ-SCHIP1C9J366 451 aaPredicted RBP4.26□□□□□ -1.73
MCF2-203ENST00000370576 CYTH3O43739 400 aa4.26□□□□□ -1.73
MCF2-203ENST00000370576 ZEB2O60315 1214 aa4.26□□□□□ -1.73
MCF2-203ENST00000370576 TFE3P19532 575 aaPredicted RBP4.26□□□□□ -1.73
MCF2-203ENST00000370576 CTSSP25774 331 aa4.26□□□□□ -1.73
MCF2-203ENST00000370576 PRDX5P30044 214 aa4.26□□□□□ -1.73
MCF2-203ENST00000370576 L1CAMP32004 1257 aa4.26□□□□□ -1.73
MCF2-203ENST00000370576 IARSP41252 1262 aaKnown RBP4.26□□□□□ -1.73
MCF2-203ENST00000370576 AGFG1P52594 562 aaKnown RBP4.26□□□□□ -1.73
MCF2-203ENST00000370576 WNT7BP56706 349 aa4.26□□□□□ -1.73
MCF2-203ENST00000370576 SLC26A5P58743 744 aa4.26□□□□□ -1.73
MCF2-203ENST00000370576 MRPS35P82673 323 aaKnown RBP4.26□□□□□ -1.73
MCF2-203ENST00000370576 SLC39A14Q15043 492 aa4.26□□□□□ -1.73
MCF2-203ENST00000370576 FAM110CQ1W6H9 321 aa4.26□□□□□ -1.73
MCF2-203ENST00000370576 AARDQ4LEZ3 155 aa4.26□□□□□ -1.73
MCF2-203ENST00000370576 HGSNATQ68CP4 663 aa4.26□□□□□ -1.73
MCF2-203ENST00000370576 WWC2Q6AWC2 1192 aa4.26□□□□□ -1.73
MCF2-203ENST00000370576 MCTP2Q6DN12 878 aa4.26□□□□□ -1.73
MCF2-203ENST00000370576 CDC42EP5Q6NZY7 148 aa4.26□□□□□ -1.73
MCF2-203ENST00000370576 IL27RAQ6UWB1 636 aa4.26□□□□□ -1.73
MCF2-203ENST00000370576 FAM156AQ8NDB6 213 aa4.26□□□□□ -1.73
MCF2-203ENST00000370576 CEP76Q8TAP6 659 aa4.26□□□□□ -1.73
MCF2-203ENST00000370576 SLC5A11Q8WWX8 675 aa4.26□□□□□ -1.73
MCF2-203ENST00000370576 NXPE3Q969Y0 559 aa4.26□□□□□ -1.73
MCF2-203ENST00000370576 ZC3H10Q96K80 434 aaKnown RBP4.26□□□□□ -1.73
MCF2-203ENST00000370576 MTMR9Q96QG7 549 aa4.26□□□□□ -1.73
MCF2-203ENST00000370576 NUCKS1Q9H1E3 243 aaKnown RBP4.26□□□□□ -1.73
MCF2-203ENST00000370576 MYLK2Q9H1R3 596 aa4.26□□□□□ -1.73
MCF2-203ENST00000370576 MVB12BQ9H7P6 319 aa4.26□□□□□ -1.73
MCF2-203ENST00000370576 VTA1Q9NP79 307 aa4.26□□□□□ -1.73
MCF2-203ENST00000370576 ADGRA2Q96PE1 1338 aa4.26□□□□□ -1.73
MCF2-203ENST00000370576 NLRC5Q86WI3 1866 aa4.26□□□□□ -1.73
MCF2-203ENST00000370576 PGPEP1LA6NFU8 196 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms