RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 ADGRG1Q9Y653 693 aa20.16■□□□□ 0.82
CLN3-204ENST00000357857 LACTBL1A8MY62 500 aa20.16■□□□□ 0.82
CLN3-204ENST00000357857 DNM1LO00429 736 aa20.16■□□□□ 0.82
CLN3-204ENST00000357857 SOX5P35711 763 aa20.16■□□□□ 0.82
CLN3-204ENST00000357857 EIF4A3P38919 411 aaKnown RBP20.16■□□□□ 0.82
CLN3-204ENST00000357857 TFAMQ00059 246 aaKnown RBP20.16■□□□□ 0.82
CLN3-204ENST00000357857 ARID5AQ03989 594 aa20.16■□□□□ 0.82
CLN3-204ENST00000357857 FMNL3Q8IVF7 1028 aa20.16■□□□□ 0.82
CLN3-204ENST00000357857 EFCAB13Q8IY85 973 aa20.16■□□□□ 0.82
CLN3-204ENST00000357857 DHX38Q92620 1227 aaKnown RBP20.16■□□□□ 0.82
CLN3-204ENST00000357857 ANKRD36BP1Q96IX9 119 aa20.16■□□□□ 0.82
CLN3-204ENST00000357857 CCDC42Q96M95 316 aa20.16■□□□□ 0.82
CLN3-204ENST00000357857 MTMR12Q9C0I1 747 aa20.16■□□□□ 0.82
CLN3-204ENST00000357857 RNF208Q9H0X6 261 aa20.16■□□□□ 0.82
CLN3-204ENST00000357857 ASB7Q9H672 318 aa20.16■□□□□ 0.82
CLN3-204ENST00000357857 SSU72P8A0A1W2PR75 194 aa20.15■□□□□ 0.82
CLN3-204ENST00000357857 MEFVO15553 781 aaPredicted RBP20.15■□□□□ 0.82
CLN3-204ENST00000357857 RPS6KA5O75582 802 aa20.15■□□□□ 0.82
CLN3-204ENST00000357857 TNNC2P02585 160 aa20.15■□□□□ 0.82
CLN3-204ENST00000357857 TMEM191BP0C7N4 346 aa20.15■□□□□ 0.82
CLN3-204ENST00000357857 FERP16591 822 aa20.15■□□□□ 0.82
CLN3-204ENST00000357857 KLHL30Q0D2K2 578 aa20.15■□□□□ 0.82
CLN3-204ENST00000357857 MAPK8IP2Q13387 824 aaPredicted RBP20.15■□□□□ 0.82
CLN3-204ENST00000357857 SLC10A6Q3KNW5 377 aa20.15■□□□□ 0.82
CLN3-204ENST00000357857 WDR44Q5JSH3 913 aa20.15■□□□□ 0.82
CLN3-204ENST00000357857 TRAPPC11Q7Z392 1133 aa20.15■□□□□ 0.82
CLN3-204ENST00000357857 IRF2BP2Q7Z5L9 587 aa20.15■□□□□ 0.82
CLN3-204ENST00000357857 PPM1KQ8N3J5 372 aa20.15■□□□□ 0.82
CLN3-204ENST00000357857 ACRBPQ8NEB7 543 aa20.15■□□□□ 0.82
CLN3-204ENST00000357857 PI4K2AQ9BTU6 479 aa20.15■□□□□ 0.82
CLN3-204ENST00000357857 TRIM6Q9C030 488 aaPredicted RBP20.15■□□□□ 0.82
CLN3-204ENST00000357857 GPR88Q9GZN0 384 aa20.15■□□□□ 0.82
CLN3-204ENST00000357857 DEF6Q9H4E7 631 aa20.15■□□□□ 0.82
CLN3-204ENST00000357857 ARVCFO00192 962 aa20.14■□□□□ 0.81
CLN3-204ENST00000357857 MFAP3P55082 362 aa20.14■□□□□ 0.81
CLN3-204ENST00000357857 NCOA4Q13772 614 aa20.14■□□□□ 0.81
CLN3-204ENST00000357857 TRIM71Q2Q1W2 868 aaKnown RBP20.14■□□□□ 0.81
CLN3-204ENST00000357857 HELQQ8TDG4 1101 aa20.14■□□□□ 0.81
CLN3-204ENST00000357857 C1orf112Q9NSG2 853 aa20.14■□□□□ 0.81
CLN3-204ENST00000357857 BZW2Q9Y6E2 419 aaKnown RBP20.14■□□□□ 0.81
CLN3-204ENST00000357857 PDCD11Q14690 1871 aaKnown RBP20.14■□□□□ 0.81
CLN3-204ENST00000357857 EIF3CLB5ME19 914 aaKnown RBP20.13■□□□□ 0.81
CLN3-204ENST00000357857 GFPT2O94808 682 aa20.13■□□□□ 0.81
CLN3-204ENST00000357857 PNMA6AP0CW24 399 aaPredicted RBP20.13■□□□□ 0.81
CLN3-204ENST00000357857 CLCN1P35523 988 aa20.13■□□□□ 0.81
CLN3-204ENST00000357857 PRKCIP41743 596 aa20.13■□□□□ 0.81
CLN3-204ENST00000357857 JADE1Q6IE81 842 aa20.13■□□□□ 0.81
CLN3-204ENST00000357857 CD302Q8IX05 232 aa20.13■□□□□ 0.81
CLN3-204ENST00000357857 REXO1L1PQ8IX06 675 aa20.13■□□□□ 0.81
CLN3-204ENST00000357857 KAT5Q92993 513 aa20.13■□□□□ 0.81
CLN3-204ENST00000357857 TATDN2Q93075 761 aa20.13■□□□□ 0.81
CLN3-204ENST00000357857 FAM81BQ96LP2 452 aa20.13■□□□□ 0.81
CLN3-204ENST00000357857 KREMEN1Q96MU8 473 aa20.13■□□□□ 0.81
CLN3-204ENST00000357857 EIF3CQ99613 913 aaKnown RBP20.13■□□□□ 0.81
CLN3-204ENST00000357857 SNTG2Q9NY99 539 aa20.13■□□□□ 0.81
CLN3-204ENST00000357857 OGDHLQ9ULD0 1010 aa20.13■□□□□ 0.81
CLN3-204ENST00000357857 CAND2O75155 1236 aa20.13■□□□□ 0.81
CLN3-204ENST00000357857 NFICP08651 508 aa20.13■□□□□ 0.81
CLN3-204ENST00000357857 KIF11P52732 1056 aa20.13■□□□□ 0.81
CLN3-204ENST00000357857 FAM26DQ5JW98 314 aa20.13■□□□□ 0.81
CLN3-204ENST00000357857 UBXN11Q5T124 520 aa20.13■□□□□ 0.81
CLN3-204ENST00000357857 CTU1Q7Z7A3 348 aaKnown RBP20.13■□□□□ 0.81
CLN3-204ENST00000357857 SEZ6LQ9BYH1 1024 aa20.13■□□□□ 0.81
CLN3-204ENST00000357857 TRPV6Q9H1D0 765 aa20.13■□□□□ 0.81
CLN3-204ENST00000357857 ST3GAL5Q9UNP4 418 aa20.13■□□□□ 0.81
CLN3-204ENST00000357857 GOLGA6L9A6NEM1 432 aa20.12■□□□□ 0.81
CLN3-204ENST00000357857 FOXN3O00409 490 aaPredicted RBP20.12■□□□□ 0.81
CLN3-204ENST00000357857 AKR1B10O60218 316 aa20.12■□□□□ 0.81
CLN3-204ENST00000357857 EVI5O60447 810 aa20.12■□□□□ 0.81
CLN3-204ENST00000357857 IPO7O95373 1038 aaKnown RBP20.12■□□□□ 0.81
CLN3-204ENST00000357857 CCDC172P0C7W6 258 aa20.12■□□□□ 0.81
CLN3-204ENST00000357857 YARSP54577 528 aaKnown RBP20.12■□□□□ 0.81
CLN3-204ENST00000357857 GCNT1Q02742 428 aa20.12■□□□□ 0.81
CLN3-204ENST00000357857 TRPC3Q13507 836 aa20.12■□□□□ 0.81
CLN3-204ENST00000357857 ASTE1Q2TB18 679 aaPredicted RBP20.12■□□□□ 0.81
CLN3-204ENST00000357857 TWF2Q6IBS0 349 aaKnown RBP20.12■□□□□ 0.81
CLN3-204ENST00000357857 ENOSF1Q7L5Y1 443 aa20.12■□□□□ 0.81
CLN3-204ENST00000357857 ELMO3Q96BJ8 720 aa20.12■□□□□ 0.81
CLN3-204ENST00000357857 IMPG2Q9BZV3 1241 aa20.12■□□□□ 0.81
CLN3-204ENST00000357857 NXF3Q9H4D5 531 aaKnown RBP20.12■□□□□ 0.81
CLN3-204ENST00000357857 HAUS4Q9H6D7 363 aa20.12■□□□□ 0.81
CLN3-204ENST00000357857 PLEKHA5Q9HAU0 1116 aa20.12■□□□□ 0.81
CLN3-204ENST00000357857 GPR182O15218 404 aa20.11■□□□□ 0.81
CLN3-204ENST00000357857 HSPA8P11142 646 aaKnown RBP20.11■□□□□ 0.81
CLN3-204ENST00000357857 KRT83P78385 493 aa20.11■□□□□ 0.81
CLN3-204ENST00000357857 NFX1Q12986 1120 aaKnown RBP20.11■□□□□ 0.81
CLN3-204ENST00000357857 TMEM132DQ14C87 1099 aa20.11■□□□□ 0.81
CLN3-204ENST00000357857 FBXO47Q5MNV8 452 aa20.11■□□□□ 0.81
CLN3-204ENST00000357857 NT5DC4Q86YG4 428 aa20.11■□□□□ 0.81
CLN3-204ENST00000357857 SNX27Q96L92 541 aa20.11■□□□□ 0.81
CLN3-204ENST00000357857 CHST12Q9NRB3 414 aa20.11■□□□□ 0.81
CLN3-204ENST00000357857 REXO2Q9Y3B8 237 aaKnown RBP20.11■□□□□ 0.81
CLN3-204ENST00000357857 C2CD2Q9Y426 696 aa20.11■□□□□ 0.81
CLN3-204ENST00000357857 HES2Q9Y543 173 aa20.11■□□□□ 0.81
CLN3-204ENST00000357857 CST3P01034 146 aaPredicted RBP20.1■□□□□ 0.81
CLN3-204ENST00000357857 NOP14P78316 857 aaKnown RBP20.1■□□□□ 0.81
CLN3-204ENST00000357857 PTK2Q05397 1052 aa20.1■□□□□ 0.81
CLN3-204ENST00000357857 SPA17Q15506 151 aa20.1■□□□□ 0.81
CLN3-204ENST00000357857 ZNF618Q5T7W0 954 aa20.1■□□□□ 0.81
CLN3-204ENST00000357857 SPOPLQ6IQ16 392 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms