RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 GJB5O95377 273 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 PTMSP20962 102 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 AXLP30530 894 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 CLDN10P78369 228 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 MYL5Q02045 173 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 KCNMA1Q12791 1236 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 ALCAMQ13740 583 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 CCDC142Q17RM4 750 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 TCP11X2Q5H9J9 407 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 TDRD10Q5VZ19 366 aaKnown RBP4.37□□□□□ -1.71
LIG4-201ENST00000356922 SV2AQ7L0J3 742 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 FILIP1Q7Z7B0 1213 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 FAM186BQ8IYM0 893 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 FEZF2Q8TBJ5 459 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 FAM200AQ8TCP9 573 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 HERVK_113Q902F9 699 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 VN1R3Q9BXE9 311 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 TMEM117Q9H0C3 514 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 CWH43Q9H720 699 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 CERS4Q9HA82 394 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 TBC1D13Q9NVG8 400 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 TMEM161AQ9NX61 479 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 TAB2Q9NYJ8 693 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 NME7Q9Y5B8 376 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 BRWD1Q9NSI6 2320 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 ABHD14A-ACY1A0A1B0GW23 586 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 LRRC10BA6NIK2 292 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 ZNF233A6NK53 670 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 SOX1O00570 391 aaPredicted RBP4.37□□□□□ -1.71
LIG4-201ENST00000356922 N4BP3O15049 544 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 LETM1O95202 739 aaPredicted RBP4.37□□□□□ -1.71
LIG4-201ENST00000356922 CALCAP01258 141 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 C4BPAP04003 597 aaKnown RBP4.37□□□□□ -1.71
LIG4-201ENST00000356922 CLTAP09496 248 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 ACTN1P12814 892 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 ITGA4P13612 1032 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 PPIGQ13427 754 aaKnown RBP eCLIP4.37□□□□□ -1.71
LIG4-201ENST00000356922 NFIL3Q16649 462 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 GJB7Q6PEY0 223 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 C15orf39Q6ZRI6 1047 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 BRSK2Q8IWQ3 736 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 RPUSD2Q8IZ73 545 aaKnown RBP4.37□□□□□ -1.71
LIG4-201ENST00000356922 SLC17A8Q8NDX2 589 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 TAS1R2Q8TE23 839 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 KAT5Q92993 513 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 BPIFA3Q9BQP9 254 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 UBE2OQ9C0C9 1292 aaKnown RBP4.37□□□□□ -1.71
LIG4-201ENST00000356922 NRDE2Q9H7Z3 1164 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 RSAD1Q9HA92 442 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 CNTN3Q9P232 1028 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 MTUS1Q9ULD2 1270 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 EXOC7Q9UPT5 735 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 PCDHGC5Q9Y5F6 944 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 UBE4BO95155 1302 aa4.37□□□□□ -1.71
LIG4-201ENST00000356922 EPOPA6NHQ4 379 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 TBKBP1A7MCY6 615 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 KCNJ18B7U540 433 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 H0YCG3 227 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 RFXAPO00287 272 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 CETN3O15182 167 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 CALUO43852 315 aaPredicted RBP4.36□□□□□ -1.71
LIG4-201ENST00000356922 EOMESO95936 686 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 SLC9A1P19634 815 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 PSMC2P35998 433 aaKnown RBP4.36□□□□□ -1.71
LIG4-201ENST00000356922 VAMP7P51809 220 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 TFAMQ00059 246 aaKnown RBP4.36□□□□□ -1.71
LIG4-201ENST00000356922 MLLT1Q03111 559 aaPredicted RBP4.36□□□□□ -1.71
LIG4-201ENST00000356922 KCNH2Q12809 1159 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 BFSP1Q12934 665 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 KCNJ12Q14500 433 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 PSMD6Q15008 389 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 PCBP1Q15365 356 aaKnown RBP eCLIP4.36□□□□□ -1.71
LIG4-201ENST00000356922 DCAF17Q5H9S7 520 aaPredicted RBP4.36□□□□□ -1.71
LIG4-201ENST00000356922 SLFN12LQ6IEE8 588 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 HERC6Q8IVU3 1022 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 ZNF710Q8N1W2 664 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 TATDN2Q93075 761 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 ARID3AQ99856 593 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 LBHD1Q9BQE6 289 aaPredicted RBP4.36□□□□□ -1.71
LIG4-201ENST00000356922 LPIN3Q9BQK8 851 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 TUBGCP2Q9BSJ2 902 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 FTHL17Q9BXU8 183 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 PBX4Q9BYU1 374 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 XYLT2Q9H1B5 865 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 RPF1Q9H9Y2 349 aaKnown RBP4.36□□□□□ -1.71
LIG4-201ENST00000356922 APOBEC3GQ9HC16 384 aaKnown RBP4.36□□□□□ -1.71
LIG4-201ENST00000356922 PCDHB7Q9Y5E2 793 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 NR2E3Q9Y5X4 410 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 MRPL42Q9Y6G3 142 aaKnown RBP4.36□□□□□ -1.71
LIG4-201ENST00000356922 PRRC2BQ5JSZ5 2229 aaKnown RBP4.36□□□□□ -1.71
LIG4-201ENST00000356922 GBF1Q92538 1859 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 IKBKBO14920 756 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 CSPG5O95196 566 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 RPLP2P05387 115 aaKnown RBP4.36□□□□□ -1.71
LIG4-201ENST00000356922 ATP2A2P16615 1042 aaKnown RBP4.36□□□□□ -1.71
LIG4-201ENST00000356922 DNAJB1P25685 340 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 RFC2P35250 354 aa4.36□□□□□ -1.71
LIG4-201ENST00000356922 MARSP56192 900 aaKnown RBP4.36□□□□□ -1.71
LIG4-201ENST00000356922 HTRA4P83105 476 aaPredicted RBP4.36□□□□□ -1.71
LIG4-201ENST00000356922 DSC1Q08554 894 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms