RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 SMAD4Q13485 552 aaKnown RBP7.83□□□□□ -1.16
VPS13A-201ENST00000355766 GPM6BQ13491 265 aa7.83□□□□□ -1.16
VPS13A-201ENST00000355766 GNL2Q13823 731 aaKnown RBP7.83□□□□□ -1.16
VPS13A-201ENST00000355766 CCDC183Q5T5S1 534 aa7.83□□□□□ -1.16
VPS13A-201ENST00000355766 SLFN13Q68D06 897 aa7.83□□□□□ -1.16
VPS13A-201ENST00000355766 MCTP2Q6DN12 878 aa7.83□□□□□ -1.16
VPS13A-201ENST00000355766 OGFOD2Q6N063 350 aa7.83□□□□□ -1.16
VPS13A-201ENST00000355766 TMC7Q7Z402 723 aa7.83□□□□□ -1.16
VPS13A-201ENST00000355766 FERMT3Q86UX7 667 aa7.83□□□□□ -1.16
VPS13A-201ENST00000355766 DIS3L2Q8IYB7 885 aaKnown RBP7.83□□□□□ -1.16
VPS13A-201ENST00000355766 SRBD1Q8N5C6 995 aaKnown RBP7.83□□□□□ -1.16
VPS13A-201ENST00000355766 LINC00301Q8NCQ3 95 aa7.83□□□□□ -1.16
VPS13A-201ENST00000355766 BICD2Q8TD16 824 aa7.83□□□□□ -1.16
VPS13A-201ENST00000355766 GPT2Q8TD30 523 aa7.83□□□□□ -1.16
VPS13A-201ENST00000355766 STK35Q8TDR2 534 aa7.83□□□□□ -1.16
VPS13A-201ENST00000355766 IRF2BPLQ9H1B7 796 aa7.83□□□□□ -1.16
VPS13A-201ENST00000355766 RIOX1Q9H6W3 641 aa7.83□□□□□ -1.16
VPS13A-201ENST00000355766 BARHL2Q9NY43 387 aa7.83□□□□□ -1.16
VPS13A-201ENST00000355766 ADD3Q9UEY8 706 aaKnown RBP7.83□□□□□ -1.16
VPS13A-201ENST00000355766 SEC63Q9UGP8 760 aaKnown RBP7.83□□□□□ -1.16
VPS13A-201ENST00000355766 PNMA2Q9UL42 364 aa7.83□□□□□ -1.16
VPS13A-201ENST00000355766 NOL7Q9UMY1 257 aaKnown RBP7.83□□□□□ -1.16
VPS13A-201ENST00000355766 KRTAP4-8A0A0G2JLE6 195 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 FAM237AA0A1B0GTK4 181 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 SOWAHDA6NJG2 315 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 KLRF2D3W0D1 207 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 PROB1E7EW31 1015 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 STXBP3O00186 592 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 PLA2G6O60733 806 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 TBX10O75333 385 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 TECTAO75443 2155 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 PLEKHA8P1O95397 391 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 AMHP03971 560 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 GNA11P29992 359 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 VCPP55072 806 aaKnown RBP7.82□□□□□ -1.16
VPS13A-201ENST00000355766 ZXDAP98168 799 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 PPP2R3AQ06190 1150 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 ZNF543Q08ER8 600 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 SLC39A14Q15043 492 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 CLUL1Q15846 466 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 ADALQ6DHV7 355 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.82□□□□□ -1.16
VPS13A-201ENST00000355766 ELOA2Q8IYF1 753 aaPredicted RBP7.82□□□□□ -1.16
VPS13A-201ENST00000355766 MYOCDQ8IZQ8 938 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 PLD6Q8N2A8 252 aaKnown RBP7.82□□□□□ -1.16
VPS13A-201ENST00000355766 FAM181AQ8N9Y4 354 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 SCFD2Q8WU76 684 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 CHURC1Q8WUH1 139 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 ATOH1Q92858 354 aaPredicted RBP7.82□□□□□ -1.16
VPS13A-201ENST00000355766 COPS5Q92905 334 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 MTMR8Q96EF0 704 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 RRP36Q96EU6 259 aaKnown RBP7.82□□□□□ -1.16
VPS13A-201ENST00000355766 USP28Q96RU2 1077 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 BCO2Q9BYV7 579 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 ZMYND12Q9H0C1 365 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 CCPG1Q9ULG6 757 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 ZFHX2Q9C0A1 2572 aaPredicted RBP7.82□□□□□ -1.16
VPS13A-201ENST00000355766 TRIOO75962 3097 aa7.82□□□□□ -1.16
VPS13A-201ENST00000355766 TET1Q8NFU7 2136 aa7.81□□□□□ -1.16
VPS13A-201ENST00000355766 LAD1O00515 517 aa7.81□□□□□ -1.16
VPS13A-201ENST00000355766 SPTLC2O15270 562 aa7.81□□□□□ -1.16
VPS13A-201ENST00000355766 RNGTTO60942 597 aaKnown RBP7.81□□□□□ -1.16
VPS13A-201ENST00000355766 ICAM1P05362 532 aa7.81□□□□□ -1.16
VPS13A-201ENST00000355766 MMP3P08254 477 aa7.81□□□□□ -1.16
VPS13A-201ENST00000355766 JUNBP17275 347 aaPredicted RBP7.81□□□□□ -1.16
VPS13A-201ENST00000355766 EDNRBP24530 442 aa7.81□□□□□ -1.16
VPS13A-201ENST00000355766 SLC1A4P43007 532 aa7.81□□□□□ -1.16
VPS13A-201ENST00000355766 CHMP4BP1P59074 171 aa7.81□□□□□ -1.16
VPS13A-201ENST00000355766 SNAP25P60880 206 aa7.81□□□□□ -1.16
VPS13A-201ENST00000355766 FAM160A1Q05DH4 1040 aa7.81□□□□□ -1.16
VPS13A-201ENST00000355766 DLX2Q07687 328 aaPredicted RBP7.81□□□□□ -1.16
VPS13A-201ENST00000355766 HYAL1Q12794 435 aa7.81□□□□□ -1.16
VPS13A-201ENST00000355766 BAATQ14032 418 aaPredicted RBP7.81□□□□□ -1.16
VPS13A-201ENST00000355766 NPY5RQ15761 445 aa7.81□□□□□ -1.16
VPS13A-201ENST00000355766 TRIM71Q2Q1W2 868 aaKnown RBP7.81□□□□□ -1.16
VPS13A-201ENST00000355766 ZSCAN23Q3MJ62 389 aa7.81□□□□□ -1.16
VPS13A-201ENST00000355766 CAVIN1Q6NZI2 390 aaKnown RBP7.81□□□□□ -1.16
VPS13A-201ENST00000355766 SLC30A10Q6XR72 485 aa7.81□□□□□ -1.16
VPS13A-201ENST00000355766 RBM43Q6ZSC3 357 aaKnown RBP7.81□□□□□ -1.16
VPS13A-201ENST00000355766 ASCL5Q7RTU5 278 aa7.81□□□□□ -1.16
VPS13A-201ENST00000355766 RAB11FIP4Q86YS3 637 aa7.81□□□□□ -1.16
VPS13A-201ENST00000355766 TMEM192Q8IY95 271 aa7.81□□□□□ -1.16
VPS13A-201ENST00000355766 STK11IPQ8N1F8 1099 aa7.81□□□□□ -1.16
VPS13A-201ENST00000355766 YME1L1Q96TA2 773 aa7.81□□□□□ -1.16
VPS13A-201ENST00000355766 PYM1Q9BRP8 204 aaKnown RBP7.81□□□□□ -1.16
VPS13A-201ENST00000355766 GTF2IRD1Q9UHL9 959 aa7.81□□□□□ -1.16
VPS13A-201ENST00000355766 PCDHA4Q9UN74 947 aa7.81□□□□□ -1.16
VPS13A-201ENST00000355766 U3KQE9 123 aa7.81□□□□□ -1.16
VPS13A-201ENST00000355766 EMSYQ7Z589 1322 aa7.8□□□□□ -1.16
VPS13A-201ENST00000355766 MYH4Q9Y623 1939 aa7.8□□□□□ -1.16
VPS13A-201ENST00000355766 PNMA6FA0A0J9YX94 578 aa7.8□□□□□ -1.16
VPS13A-201ENST00000355766 PRR23AA6NEV1 266 aa7.8□□□□□ -1.16
VPS13A-201ENST00000355766 GOLGA6L3A6NEY3 463 aa7.8□□□□□ -1.16
VPS13A-201ENST00000355766 RBAK-RBAKDNI3L0D1 243 aa7.8□□□□□ -1.16
VPS13A-201ENST00000355766 NFIBO00712 420 aa7.8□□□□□ -1.16
VPS13A-201ENST00000355766 LEFTY1O75610 366 aa7.8□□□□□ -1.16
VPS13A-201ENST00000355766 ARIH2O95376 493 aa7.8□□□□□ -1.16
VPS13A-201ENST00000355766 TXNP10599 105 aaKnown RBP7.8□□□□□ -1.16
VPS13A-201ENST00000355766 CMA1P23946 247 aa7.8□□□□□ -1.16
VPS13A-201ENST00000355766 SIGLEC14Q08ET2 396 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms