RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 USH1CQ9Y6N9 552 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 A0A1B0GTH6 734 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 ARL2P36404 184 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 PRKCZQ05513 592 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 SPAG1Q07617 926 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 KIF22Q14807 665 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 EMC2Q15006 297 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 TAF11Q15544 211 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 FAM102BQ5T8I3 360 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 TRIM42Q8IWZ5 723 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 CSGALNACT2Q8N6G5 542 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 OR6J1Q8NGC5 347 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 FAM81AQ8TBF8 368 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 MDM1Q8TC05 714 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 DYDC1Q8WWB3 177 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 SEC16BQ96JE7 1060 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 PCDHB13Q9Y5F0 798 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 ZNF233A6NK53 670 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 HBP1O60381 514 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 GCNT3O95395 438 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 GNRH1P01148 92 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 EEF1GP26641 437 aaKnown RBP10.84□□□□□ -0.67
SYNE1-203ENST00000354674 KCNJ2P63252 427 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 NKX3-2P78367 333 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 HTRA3P83110 453 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 PTPROQ16827 1216 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 EXOC8Q8IYI6 725 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 CCDC63Q8NA47 563 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 EHBP1Q8NDI1 1231 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 BSNDQ8WZ55 320 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 SIP14410 1827 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 FAM170AA1A519 330 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 KCNJ18B7U540 433 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 N4BP3O15049 544 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 TGFB1I1O43294 461 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 GAS2O43903 313 aaKnown RBP10.84□□□□□ -0.67
SYNE1-203ENST00000354674 ZNF189O75820 626 aaPredicted RBP10.84□□□□□ -0.67
SYNE1-203ENST00000354674 PCK1P35558 622 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 MDH1P40925 334 aaKnown RBP10.84□□□□□ -0.67
SYNE1-203ENST00000354674 IGBP1P78318 339 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 AMPD2Q01433 879 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 KCNJ12Q14500 433 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 NR1I3Q14994 352 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 STXBP4Q6ZWJ1 553 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 TRMT1LQ7Z2T5 733 aaKnown RBP10.84□□□□□ -0.67
SYNE1-203ENST00000354674 BICD1Q96G01 975 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 CEP63Q96MT8 703 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 CTAGE1Q96RT6 745 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 TSG101Q99816 390 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 RNPEPQ9H4A4 650 aa10.84□□□□□ -0.67
SYNE1-203ENST00000354674 TYW1Q9NV66 732 aaKnown RBP10.84□□□□□ -0.67
SYNE1-203ENST00000354674 GPR25O00155 361 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 NPTX2P47972 431 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 CARSP49589 748 aaKnown RBP10.83□□□□□ -0.68
SYNE1-203ENST00000354674 POLGP54098 1239 aaPredicted RBP10.83□□□□□ -0.68
SYNE1-203ENST00000354674 FKBP3Q00688 224 aaKnown RBP10.83□□□□□ -0.68
SYNE1-203ENST00000354674 KCNA1Q09470 495 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 KRT31Q15323 416 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 DGKDQ16760 1214 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 ZC2HC1CQ53FD0 456 aaPredicted RBP10.83□□□□□ -0.68
SYNE1-203ENST00000354674 NELFCDQ8IXH7 590 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 TMEM161BQ8NDZ6 487 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 RBM41Q96IZ5 413 aaKnown RBP10.83□□□□□ -0.68
SYNE1-203ENST00000354674 SRRDQ9UH36 339 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 COL1A2P08123 1366 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 FGFR1OPO95684 399 aaKnown RBP10.83□□□□□ -0.68
SYNE1-203ENST00000354674 FAM107AO95990 144 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 MARSP56192 900 aaKnown RBP10.83□□□□□ -0.68
SYNE1-203ENST00000354674 RNASELQ05823 741 aaKnown RBP10.83□□□□□ -0.68
SYNE1-203ENST00000354674 FILIP1LQ4L180 1135 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 ZNF484Q5JVG2 852 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 TCERG1LQ5VWI1 586 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 MFSD14CQ5VZR4 134 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 TLK2Q86UE8 772 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 FAM114A1Q8IWE2 563 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 CACNA2D3Q8IZS8 1091 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 SLC7A3Q8WY07 619 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 PCMTD2Q9NV79 361 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 ZFATQ9P243 1243 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 PCDHGA4Q9Y5G9 962 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 SMIM23A6NLE4 172 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 ZSCAN9O15535 394 aaPredicted RBP10.83□□□□□ -0.68
SYNE1-203ENST00000354674 AKR1A1P14550 325 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 MARK3P27448 753 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 CA8P35219 290 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 KRT9P35527 623 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 PEX3P56589 373 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 SOX10P56693 466 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 PLEKHG4BQ96PX9 1271 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 POLR3FQ9H1D9 316 aaPredicted RBP10.83□□□□□ -0.68
SYNE1-203ENST00000354674 ARHGAP28Q9P2N2 729 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 TRIM33Q9UPN9 1127 aa10.83□□□□□ -0.68
SYNE1-203ENST00000354674 H0Y3Z8 333 aa10.82□□□□□ -0.68
SYNE1-203ENST00000354674 K7ENM7 598 aa10.82□□□□□ -0.68
SYNE1-203ENST00000354674 DYNC1LI2O43237 492 aaPredicted RBP10.82□□□□□ -0.68
SYNE1-203ENST00000354674 NCK2O43639 380 aa10.82□□□□□ -0.68
SYNE1-203ENST00000354674 DUSP11O75319 330 aaKnown RBP10.82□□□□□ -0.68
SYNE1-203ENST00000354674 GYPCP04921 128 aa10.82□□□□□ -0.68
SYNE1-203ENST00000354674 PBX1P40424 430 aa10.82□□□□□ -0.68
SYNE1-203ENST00000354674 DMP1Q13316 513 aaPredicted RBP10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms