RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 PTPROQ16827 1216 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 CCDC142Q17RM4 750 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 LONRF2Q1L5Z9 754 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 INF2Q27J81 1249 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 QRICH1Q2TAL8 776 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 GNPTABQ3T906 1256 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 TCP11X2Q5H9J9 407 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 JAKMIP3Q5VZ66 844 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 FSTL4Q6MZW2 842 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 SLC39A4Q6P5W5 647 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 DLK2Q6UY11 383 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 DPP8Q6V1X1 898 aaPredicted RBP2.59□□□□□ -1.99
VPS54-202ENST00000354504 OTOP1Q7RTM1 612 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 ZC3HAV1Q7Z2W4 902 aaKnown RBP2.59□□□□□ -1.99
VPS54-202ENST00000354504 FAM83AQ86UY5 434 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 CERS3Q8IU89 383 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 FAM13CQ8NE31 585 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 DNAJB8Q8NHS0 232 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 SLC30A5Q8TAD4 765 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 SLC7A14Q8TBB6 771 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 TBCKQ8TEA7 893 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 ZNF526Q8TF50 670 aaPredicted RBP2.59□□□□□ -1.99
VPS54-202ENST00000354504 MEGF10Q96KG7 1140 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 C12orf42Q96LP6 360 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 Q96M66 194 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 ZNF396Q96N95 335 aaPredicted RBP2.59□□□□□ -1.99
VPS54-202ENST00000354504 UBA5Q9GZZ9 404 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 ZNF70Q9UC06 446 aaPredicted RBP2.59□□□□□ -1.99
VPS54-202ENST00000354504 SWAP70Q9UH65 585 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 FBXL7Q9UJT9 491 aa2.59□□□□□ -1.99
VPS54-202ENST00000354504 ABCB11O95342 1321 aa2.59□□□□□ -2
VPS54-202ENST00000354504 FRMPD2Q68DX3 1309 aaPredicted RBP2.59□□□□□ -2
VPS54-202ENST00000354504 KRTAP4-8A0A0G2JLE6 195 aa2.59□□□□□ -2
VPS54-202ENST00000354504 MEIS1O00470 390 aa2.59□□□□□ -2
VPS54-202ENST00000354504 LAD1O00515 517 aa2.59□□□□□ -2
VPS54-202ENST00000354504 ATP2A1O14983 1001 aa2.59□□□□□ -2
VPS54-202ENST00000354504 MSH4O15457 936 aa2.59□□□□□ -2
VPS54-202ENST00000354504 CDKL5O76039 1030 aa2.59□□□□□ -2
VPS54-202ENST00000354504 SLITRK3O94933 977 aa2.59□□□□□ -2
VPS54-202ENST00000354504 ITGB5P18084 799 aa2.59□□□□□ -2
VPS54-202ENST00000354504 FSTP19883 344 aa2.59□□□□□ -2
VPS54-202ENST00000354504 RAB6AP20340 208 aa2.59□□□□□ -2
VPS54-202ENST00000354504 RXRBP28702 533 aa2.59□□□□□ -2
VPS54-202ENST00000354504 ALDH1B1P30837 517 aa2.59□□□□□ -2
VPS54-202ENST00000354504 ID4P47928 161 aa2.59□□□□□ -2
VPS54-202ENST00000354504 CDK17Q00537 523 aa2.59□□□□□ -2
VPS54-202ENST00000354504 APBA1Q02410 837 aa2.59□□□□□ -2
VPS54-202ENST00000354504 GIT2Q14161 759 aa2.59□□□□□ -2
VPS54-202ENST00000354504 SEPT2Q15019 361 aa2.59□□□□□ -2
VPS54-202ENST00000354504 LRRC41Q15345 812 aa2.59□□□□□ -2
VPS54-202ENST00000354504 UBE2SQ16763 222 aa2.59□□□□□ -2
VPS54-202ENST00000354504 ASPRV1Q53RT3 343 aa2.59□□□□□ -2
VPS54-202ENST00000354504 TAF7LQ5H9L4 462 aa2.59□□□□□ -2
VPS54-202ENST00000354504 FIGNQ5HY92 759 aa2.59□□□□□ -2
VPS54-202ENST00000354504 NOL9Q5SY16 702 aaKnown RBP2.59□□□□□ -2
VPS54-202ENST00000354504 SPTY2D1Q68D10 685 aaPredicted RBP2.59□□□□□ -2
VPS54-202ENST00000354504 MBLAC2Q68D91 279 aa2.59□□□□□ -2
VPS54-202ENST00000354504 C1orf186Q6ZWK4 172 aa2.59□□□□□ -2
VPS54-202ENST00000354504 CCDC103Q8IW40 242 aa2.59□□□□□ -2
VPS54-202ENST00000354504 CMIPQ8IY22 773 aa2.59□□□□□ -2
VPS54-202ENST00000354504 TEX11Q8IYF3 940 aa2.59□□□□□ -2
VPS54-202ENST00000354504 PHACTR4Q8IZ21 702 aa2.59□□□□□ -2
VPS54-202ENST00000354504 LRRC47Q8N1G4 583 aaKnown RBP2.59□□□□□ -2
VPS54-202ENST00000354504 SMG8Q8ND04 991 aaKnown RBP2.59□□□□□ -2
VPS54-202ENST00000354504 DCAF4Q8WV16 495 aa2.59□□□□□ -2
VPS54-202ENST00000354504 SCFD1Q8WVM8 642 aa2.59□□□□□ -2
VPS54-202ENST00000354504 C1orf159Q96HA4 380 aa2.59□□□□□ -2
VPS54-202ENST00000354504 ERGIC2Q96RQ1 377 aa2.59□□□□□ -2
VPS54-202ENST00000354504 NUP88Q99567 741 aaPredicted RBP2.59□□□□□ -2
VPS54-202ENST00000354504 IER2Q9BTL4 223 aa2.59□□□□□ -2
VPS54-202ENST00000354504 ANKZF1Q9H8Y5 726 aa2.59□□□□□ -2
VPS54-202ENST00000354504 RRAGCQ9HB90 399 aa2.59□□□□□ -2
VPS54-202ENST00000354504 IFNKQ9P0W0 207 aa2.59□□□□□ -2
VPS54-202ENST00000354504 SERPINB13Q9UIV8 391 aa2.59□□□□□ -2
VPS54-202ENST00000354504 TMEM59LQ9UK28 342 aa2.59□□□□□ -2
VPS54-202ENST00000354504 G3BP2Q9UN86 482 aaKnown RBP2.59□□□□□ -2
VPS54-202ENST00000354504 RAXQ9Y2V3 346 aa2.59□□□□□ -2
VPS54-202ENST00000354504 MUC22E2RYF6 1773 aaPredicted RBP2.58□□□□□ -2
VPS54-202ENST00000354504 CCDC69A6NI79 296 aa2.58□□□□□ -2
VPS54-202ENST00000354504 DHX16O60231 1041 aaKnown RBP2.58□□□□□ -2
VPS54-202ENST00000354504 MFAP3LO75121 409 aa2.58□□□□□ -2
VPS54-202ENST00000354504 IGLV1-40P01703 118 aa2.58□□□□□ -2
VPS54-202ENST00000354504 RPN1P04843 607 aaKnown RBP2.58□□□□□ -2
VPS54-202ENST00000354504 CYP11B2P19099 503 aa2.58□□□□□ -2
VPS54-202ENST00000354504 SP2Q02086 613 aa2.58□□□□□ -2
VPS54-202ENST00000354504 RRP12Q5JTH9 1297 aaKnown RBP2.58□□□□□ -2
VPS54-202ENST00000354504 SPATA1Q5VX52 437 aa2.58□□□□□ -2
VPS54-202ENST00000354504 KCTD1Q719H9 257 aa2.58□□□□□ -2
VPS54-202ENST00000354504 CBLL1Q75N03 491 aa2.58□□□□□ -2
VPS54-202ENST00000354504 DYMQ7RTS9 669 aa2.58□□□□□ -2
VPS54-202ENST00000354504 RNF180Q86T96 592 aa2.58□□□□□ -2
VPS54-202ENST00000354504 CATSPER3Q86XQ3 398 aa2.58□□□□□ -2
VPS54-202ENST00000354504 C2CD5Q86YS7 1000 aa2.58□□□□□ -2
VPS54-202ENST00000354504 FLAD1Q8NFF5 587 aa2.58□□□□□ -2
VPS54-202ENST00000354504 BTN2A2Q8WVV5 523 aa2.58□□□□□ -2
VPS54-202ENST00000354504 FAM151AQ8WW52 585 aa2.58□□□□□ -2
VPS54-202ENST00000354504 WFDC12Q8WWY7 111 aa2.58□□□□□ -2
VPS54-202ENST00000354504 RAD54LQ92698 747 aa2.58□□□□□ -2
VPS54-202ENST00000354504 PANX2Q96RD6 677 aa2.58□□□□□ -2
VPS54-202ENST00000354504 TM9SF2Q99805 663 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms