RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 CEBPBP17676 345 aa12.4□□□□□ -0.42
RTN3-204ENST00000354497 ARF4P18085 180 aaPredicted RBP12.4□□□□□ -0.42
RTN3-204ENST00000354497 OR1D2P34982 312 aa12.4□□□□□ -0.42
RTN3-204ENST00000354497 CXCL12P48061 93 aa12.4□□□□□ -0.42
RTN3-204ENST00000354497 RCAN1P53805 252 aa12.4□□□□□ -0.42
RTN3-204ENST00000354497 SLC5A9Q2M3M2 681 aa12.4□□□□□ -0.42
RTN3-204ENST00000354497 HS1BP3Q53T59 392 aa12.4□□□□□ -0.42
RTN3-204ENST00000354497 OTUD6AQ7L8S5 288 aa12.4□□□□□ -0.42
RTN3-204ENST00000354497 GSTCDQ8NEC7 633 aa12.4□□□□□ -0.42
RTN3-204ENST00000354497 ETNPPLQ8TBG4 499 aa12.4□□□□□ -0.42
RTN3-204ENST00000354497 ELSPBP1Q96BH3 223 aa12.4□□□□□ -0.42
RTN3-204ENST00000354497 C22orf23Q9BZE7 217 aa12.4□□□□□ -0.42
RTN3-204ENST00000354497 WRAP73Q9P2S5 460 aaPredicted RBP12.4□□□□□ -0.42
RTN3-204ENST00000354497 CACNA1GO43497 2377 aa12.4□□□□□ -0.42
RTN3-204ENST00000354497 P4HBP07237 508 aaKnown RBP12.39□□□□□ -0.43
RTN3-204ENST00000354497 RHOP08100 348 aa12.39□□□□□ -0.43
RTN3-204ENST00000354497 YWHABP31946 246 aaKnown RBP12.39□□□□□ -0.43
RTN3-204ENST00000354497 PTENP60484 403 aa12.39□□□□□ -0.43
RTN3-204ENST00000354497 MBTD1Q05BQ5 628 aa12.39□□□□□ -0.43
RTN3-204ENST00000354497 TUSC3Q13454 348 aa12.39□□□□□ -0.43
RTN3-204ENST00000354497 TMEM132AQ24JP5 1023 aa12.39□□□□□ -0.43
RTN3-204ENST00000354497 NCAPH2Q6IBW4 605 aa12.39□□□□□ -0.43
RTN3-204ENST00000354497 PDXDC1Q6P996 788 aa12.39□□□□□ -0.43
RTN3-204ENST00000354497 SLC27A1Q6PCB7 646 aa12.39□□□□□ -0.43
RTN3-204ENST00000354497 MAMSTRQ6ZN01 415 aa12.39□□□□□ -0.43
RTN3-204ENST00000354497 Q6ZUG5 572 aa12.39□□□□□ -0.43
RTN3-204ENST00000354497 C12orf50Q8NA57 414 aaPredicted RBP12.39□□□□□ -0.43
RTN3-204ENST00000354497 BRF1Q92994 677 aa12.39□□□□□ -0.43
RTN3-204ENST00000354497 LXNQ9BS40 222 aa12.39□□□□□ -0.43
RTN3-204ENST00000354497 TRMT61BQ9BVS5 477 aaKnown RBP12.39□□□□□ -0.43
RTN3-204ENST00000354497 GDE1Q9NZC3 331 aa12.39□□□□□ -0.43
RTN3-204ENST00000354497 PPME1Q9Y570 386 aa12.39□□□□□ -0.43
RTN3-204ENST00000354497 CDY1Q9Y6F8 540 aa12.39□□□□□ -0.43
RTN3-204ENST00000354497 PIAS3Q9Y6X2 628 aa12.39□□□□□ -0.43
RTN3-204ENST00000354497 USP24Q9UPU5 2620 aa12.39□□□□□ -0.43
RTN3-204ENST00000354497 CYP3A7-CYP3A51PA0A087WV96 503 aa12.38□□□□□ -0.43
RTN3-204ENST00000354497 SHISA7A6NL88 538 aa12.38□□□□□ -0.43
RTN3-204ENST00000354497 HRO43593 1189 aa12.38□□□□□ -0.43
RTN3-204ENST00000354497 SLC37A4O43826 429 aa12.38□□□□□ -0.43
RTN3-204ENST00000354497 LRG1P02750 347 aa12.38□□□□□ -0.43
RTN3-204ENST00000354497 CYP3A7P24462 503 aa12.38□□□□□ -0.43
RTN3-204ENST00000354497 PMLP29590 882 aa12.38□□□□□ -0.43
RTN3-204ENST00000354497 GDI1P31150 447 aa12.38□□□□□ -0.43
RTN3-204ENST00000354497 CYP4A11Q02928 519 aa12.38□□□□□ -0.43
RTN3-204ENST00000354497 ELAVL2Q12926 359 aaKnown RBP12.38□□□□□ -0.43
RTN3-204ENST00000354497 CAPSQ13938 189 aa12.38□□□□□ -0.43
RTN3-204ENST00000354497 CTTNQ14247 550 aaKnown RBP12.38□□□□□ -0.43
RTN3-204ENST00000354497 MXD4Q14582 209 aaPredicted RBP12.38□□□□□ -0.43
RTN3-204ENST00000354497 PCBP1Q15365 356 aaKnown RBP eCLIP12.38□□□□□ -0.439e-12■■□□□ 13.5
RTN3-204ENST00000354497 CCDC6Q16204 474 aa12.38□□□□□ -0.43
RTN3-204ENST00000354497 UVSSAQ2YD98 709 aa12.38□□□□□ -0.43
RTN3-204ENST00000354497 ASAP3Q8TDY4 903 aa12.38□□□□□ -0.43
RTN3-204ENST00000354497 DYDC2Q96IM9 177 aa12.38□□□□□ -0.43
RTN3-204ENST00000354497 CCDC43Q96MW1 224 aaKnown RBP12.38□□□□□ -0.43
RTN3-204ENST00000354497 CORO1BQ9BR76 489 aa12.38□□□□□ -0.43
RTN3-204ENST00000354497 IER2Q9BTL4 223 aa12.38□□□□□ -0.43
RTN3-204ENST00000354497 CCDC94Q9BW85 323 aaPredicted RBP12.38□□□□□ -0.43
RTN3-204ENST00000354497 RNF26Q9BY78 433 aaPredicted RBP12.38□□□□□ -0.43
RTN3-204ENST00000354497 YY1AP1Q9H869 796 aa12.38□□□□□ -0.43
RTN3-204ENST00000354497 ZFP14Q9HCL3 533 aa12.38□□□□□ -0.43
RTN3-204ENST00000354497 SCUBE2Q9NQ36 999 aa12.38□□□□□ -0.43
RTN3-204ENST00000354497 RGL1Q9NZL6 768 aa12.38□□□□□ -0.43
RTN3-204ENST00000354497 PCDHA4Q9UN74 947 aa12.38□□□□□ -0.43
RTN3-204ENST00000354497 CHD8Q9HCK8 2581 aa12.38□□□□□ -0.43
RTN3-204ENST00000354497 CFAP47Q6ZTR5 3102 aa12.38□□□□□ -0.43
RTN3-204ENST00000354497 ZBTB39O15060 712 aa12.37□□□□□ -0.43
RTN3-204ENST00000354497 AXIN1O15169 862 aa12.37□□□□□ -0.43
RTN3-204ENST00000354497 FOXD2O60548 495 aaPredicted RBP12.37□□□□□ -0.43
RTN3-204ENST00000354497 POU2F2P09086 479 aa12.37□□□□□ -0.43
RTN3-204ENST00000354497 PTPN2P17706 415 aa12.37□□□□□ -0.43
RTN3-204ENST00000354497 ARPP19P56211 112 aa12.37□□□□□ -0.43
RTN3-204ENST00000354497 CCT2P78371 535 aaKnown RBP12.37□□□□□ -0.43
RTN3-204ENST00000354497 RAB33AQ14088 237 aa12.37□□□□□ -0.43
RTN3-204ENST00000354497 KRT32Q14532 448 aa12.37□□□□□ -0.43
RTN3-204ENST00000354497 SF3A2Q15428 464 aaKnown RBP12.37□□□□□ -0.43
RTN3-204ENST00000354497 AMHR2Q16671 573 aa12.37□□□□□ -0.43
RTN3-204ENST00000354497 INF2Q27J81 1249 aa12.37□□□□□ -0.43
RTN3-204ENST00000354497 FAM78AQ5JUQ0 283 aa12.37□□□□□ -0.43
RTN3-204ENST00000354497 FAM160A2Q8N612 972 aaPredicted RBP12.37□□□□□ -0.43
RTN3-204ENST00000354497 IRF7Q92985 503 aa12.37□□□□□ -0.43
RTN3-204ENST00000354497 ZNF830Q96NB3 372 aaPredicted RBP12.37□□□□□ -0.43
RTN3-204ENST00000354497 VAV3Q9UKW4 847 aa12.37□□□□□ -0.43
RTN3-204ENST00000354497 PRRG1O14668 218 aa12.37□□□□□ -0.43
RTN3-204ENST00000354497 THP07101 528 aa12.37□□□□□ -0.43
RTN3-204ENST00000354497 HMGB1P09429 215 aaKnown RBP12.37□□□□□ -0.43
RTN3-204ENST00000354497 HOXB3P14651 431 aaPredicted RBP12.37□□□□□ -0.43
RTN3-204ENST00000354497 PTMSP20962 102 aa12.37□□□□□ -0.43
RTN3-204ENST00000354497 FCARP24071 287 aa12.37□□□□□ -0.43
RTN3-204ENST00000354497 CCNE1P24864 410 aa12.37□□□□□ -0.43
RTN3-204ENST00000354497 ELF1P32519 619 aa12.37□□□□□ -0.43
RTN3-204ENST00000354497 PPP2R5CQ13362 524 aa12.37□□□□□ -0.43
RTN3-204ENST00000354497 PDZD4Q76G19 769 aaPredicted RBP12.37□□□□□ -0.43
RTN3-204ENST00000354497 LONP2Q86WA8 852 aa12.37□□□□□ -0.43
RTN3-204ENST00000354497 TPH2Q8IWU9 490 aa12.37□□□□□ -0.43
RTN3-204ENST00000354497 C4orf19Q8IY42 314 aa12.37□□□□□ -0.43
RTN3-204ENST00000354497 BLIDQ8IZY5 108 aa12.37□□□□□ -0.43
RTN3-204ENST00000354497 ZNF687Q8N1G0 1237 aa12.37□□□□□ -0.43
RTN3-204ENST00000354497 TCEAL4Q96EI5 215 aa12.37□□□□□ -0.43
RTN3-204ENST00000354497 ARRDC1-AS1Q9H2J1 176 aa12.37□□□□□ -0.43
RTN3-204ENST00000354497 NCOA5Q9HCD5 579 aaKnown RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms