RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 APOBEC3GQ9HC16 384 aaKnown RBP16.54■□□□□ 0.24
UPF3B-202ENST00000345865 C1orf112Q9NSG2 853 aa16.54■□□□□ 0.24
UPF3B-202ENST00000345865 SHBGP04278 402 aa16.53■□□□□ 0.24
UPF3B-202ENST00000345865 ICAM3P32942 547 aa16.53■□□□□ 0.24
UPF3B-202ENST00000345865 ARL2P36404 184 aa16.53■□□□□ 0.24
UPF3B-202ENST00000345865 ENOSF1Q7L5Y1 443 aa16.53■□□□□ 0.24
UPF3B-202ENST00000345865 MCOLN2Q8IZK6 566 aa16.53■□□□□ 0.24
UPF3B-202ENST00000345865 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.53■□□□□ 0.24
UPF3B-202ENST00000345865 CNKSR2Q8WXI2 1034 aa16.53■□□□□ 0.24
UPF3B-202ENST00000345865 FNBP1Q96RU3 617 aa16.53■□□□□ 0.24
UPF3B-202ENST00000345865 TARS2Q9BW92 718 aaKnown RBP16.53■□□□□ 0.24
UPF3B-202ENST00000345865 BCCIPQ9P287 314 aaKnown RBP eCLIP16.53■□□□□ 0.24
UPF3B-202ENST00000345865 SLC12A6Q9UHW9 1150 aa16.53■□□□□ 0.24
UPF3B-202ENST00000345865 ANAPC7Q9UJX3 599 aa16.53■□□□□ 0.24
UPF3B-202ENST00000345865 MROH7Q68CQ1 1323 aa16.53■□□□□ 0.24
UPF3B-202ENST00000345865 SIP14410 1827 aa16.53■□□□□ 0.24
UPF3B-202ENST00000345865 LRRIQ4A6NIV6 560 aa16.53■□□□□ 0.24
UPF3B-202ENST00000345865 TTLL13PA6NNM8 815 aa16.53■□□□□ 0.24
UPF3B-202ENST00000345865 ACO1P21399 889 aaKnown RBP16.53■□□□□ 0.24
UPF3B-202ENST00000345865 RRM1P23921 792 aa16.53■□□□□ 0.24
UPF3B-202ENST00000345865 COILP38432 576 aaPredicted RBP16.53■□□□□ 0.24
UPF3B-202ENST00000345865 SEC24CP53992 1094 aa16.53■□□□□ 0.24
UPF3B-202ENST00000345865 MKRN4PQ13434 485 aaPredicted RBP16.53■□□□□ 0.24
UPF3B-202ENST00000345865 SEZ6Q53EL9 994 aa16.53■□□□□ 0.24
UPF3B-202ENST00000345865 NOL9Q5SY16 702 aaKnown RBP16.53■□□□□ 0.24
UPF3B-202ENST00000345865 DAB2IPQ5VWQ8 1189 aa16.53■□□□□ 0.24
UPF3B-202ENST00000345865 MTFR1LQ9H019 292 aa16.53■□□□□ 0.24
UPF3B-202ENST00000345865 R3HDMLQ9H3Y0 253 aa16.53■□□□□ 0.24
UPF3B-202ENST00000345865 GPRC5DQ9NZD1 345 aa16.53■□□□□ 0.24
UPF3B-202ENST00000345865 BTBD7Q9P203 1132 aa16.53■□□□□ 0.24
UPF3B-202ENST00000345865 FBXO40Q9UH90 709 aa16.53■□□□□ 0.24
UPF3B-202ENST00000345865 PTPN22Q9Y2R2 807 aa16.53■□□□□ 0.24
UPF3B-202ENST00000345865 IGKV6D-21A0A0A0MT36 114 aa16.52■□□□□ 0.24
UPF3B-202ENST00000345865 GSTTP1A0A1W2PQM5 241 aa16.52■□□□□ 0.24
UPF3B-202ENST00000345865 A6NNZ2 444 aa16.52■□□□□ 0.24
UPF3B-202ENST00000345865 CLDN3O15551 220 aa16.52■□□□□ 0.24
UPF3B-202ENST00000345865 USP2O75604 605 aaPredicted RBP16.52■□□□□ 0.24
UPF3B-202ENST00000345865 GGPS1O95749 300 aa16.52■□□□□ 0.24
UPF3B-202ENST00000345865 SCP2P22307 547 aa16.52■□□□□ 0.24
UPF3B-202ENST00000345865 SSTR3P32745 418 aaPredicted RBP16.52■□□□□ 0.24
UPF3B-202ENST00000345865 RWDD2BP57060 319 aa16.52■□□□□ 0.24
UPF3B-202ENST00000345865 STRN3Q13033 797 aa16.52■□□□□ 0.24
UPF3B-202ENST00000345865 DRP2Q13474 957 aa16.52■□□□□ 0.24
UPF3B-202ENST00000345865 TUBB8Q3ZCM7 444 aa16.52■□□□□ 0.24
UPF3B-202ENST00000345865 ANKRD35Q8N283 1001 aa16.52■□□□□ 0.24
UPF3B-202ENST00000345865 RNF25Q96BH1 459 aaPredicted RBP16.52■□□□□ 0.24
UPF3B-202ENST00000345865 CYFIP2Q96F07 1278 aa16.52■□□□□ 0.24
UPF3B-202ENST00000345865 HERPUD2Q9BSE4 406 aa16.52■□□□□ 0.24
UPF3B-202ENST00000345865 NOVA2Q9UNW9 492 aaKnown RBP16.52■□□□□ 0.24
UPF3B-202ENST00000345865 PCDHB2Q9Y5E7 798 aa16.52■□□□□ 0.24
UPF3B-202ENST00000345865 PTPRFP10586 1907 aa16.52■□□□□ 0.24
UPF3B-202ENST00000345865 PCNTO95613 3336 aa16.52■□□□□ 0.24
UPF3B-202ENST00000345865 H0YCG3 227 aa16.52■□□□□ 0.23
UPF3B-202ENST00000345865 K7ERI5 159 aa16.52■□□□□ 0.23
UPF3B-202ENST00000345865 PIGRP01833 764 aa16.52■□□□□ 0.23
UPF3B-202ENST00000345865 UBA1P22314 1058 aaKnown RBP16.52■□□□□ 0.23
UPF3B-202ENST00000345865 ALDH5A1P51649 535 aaPredicted RBP16.52■□□□□ 0.23
UPF3B-202ENST00000345865 CORO7P57737 925 aa16.52■□□□□ 0.23
UPF3B-202ENST00000345865 PTGISQ16647 500 aa16.52■□□□□ 0.23
UPF3B-202ENST00000345865 SH3D19Q5HYK7 790 aa16.52■□□□□ 0.23
UPF3B-202ENST00000345865 RUFY4Q6ZNE9 571 aa16.52■□□□□ 0.23
UPF3B-202ENST00000345865 DNERQ8NFT8 737 aa16.52■□□□□ 0.23
UPF3B-202ENST00000345865 EPN3Q9H201 632 aa16.52■□□□□ 0.23
UPF3B-202ENST00000345865 KIAA1586Q9HCI6 787 aa16.52■□□□□ 0.23
UPF3B-202ENST00000345865 ANKFY1Q9P2R3 1169 aa16.52■□□□□ 0.23
UPF3B-202ENST00000345865 UMODL1Q5DID0 1318 aa16.52■□□□□ 0.23
UPF3B-202ENST00000345865 NDUFAB1O14561 156 aa16.51■□□□□ 0.23
UPF3B-202ENST00000345865 CYP1A1P04798 512 aaPredicted RBP16.51■□□□□ 0.23
UPF3B-202ENST00000345865 TMOD1P28289 359 aa16.51■□□□□ 0.23
UPF3B-202ENST00000345865 MAPK4P31152 587 aa16.51■□□□□ 0.23
UPF3B-202ENST00000345865 PIK3CAP42336 1068 aa16.51■□□□□ 0.23
UPF3B-202ENST00000345865 NAMPTP43490 491 aa16.51■□□□□ 0.23
UPF3B-202ENST00000345865 BIRC3Q13489 604 aa16.51■□□□□ 0.23
UPF3B-202ENST00000345865 KRT71Q3SY84 523 aa16.51■□□□□ 0.23
UPF3B-202ENST00000345865 OR5B17Q8NGF7 314 aa16.51■□□□□ 0.23
UPF3B-202ENST00000345865 KCNN1Q92952 543 aa16.51■□□□□ 0.23
UPF3B-202ENST00000345865 NIFKQ9BYG3 293 aaKnown RBP16.51■□□□□ 0.23
UPF3B-202ENST00000345865 RBAKQ9NYW8 714 aaPredicted RBP16.51■□□□□ 0.23
UPF3B-202ENST00000345865 RASAL2Q9UJF2 1139 aa16.51■□□□□ 0.23
UPF3B-202ENST00000345865 SNCAIPQ9Y6H5 919 aa16.51■□□□□ 0.23
UPF3B-202ENST00000345865 A0A0B4J269 797 aa16.51■□□□□ 0.23
UPF3B-202ENST00000345865 O00370 1275 aa16.51■□□□□ 0.23
UPF3B-202ENST00000345865 EBAG9O00559 213 aa16.51■□□□□ 0.23
UPF3B-202ENST00000345865 PODXLO00592 558 aa16.51■□□□□ 0.23
UPF3B-202ENST00000345865 FARP2O94887 1054 aaPredicted RBP16.51■□□□□ 0.23
UPF3B-202ENST00000345865 PMS2P54278 862 aa16.51■□□□□ 0.23
UPF3B-202ENST00000345865 VGLL4Q14135 290 aa16.51■□□□□ 0.23
UPF3B-202ENST00000345865 WDR44Q5JSH3 913 aa16.51■□□□□ 0.23
UPF3B-202ENST00000345865 AGBL2Q5U5Z8 902 aa16.51■□□□□ 0.23
UPF3B-202ENST00000345865 LBX2Q6XYB7 198 aa16.51■□□□□ 0.23
UPF3B-202ENST00000345865 CCDC105Q8IYK2 499 aa16.51■□□□□ 0.23
UPF3B-202ENST00000345865 CHST13Q8NET6 341 aa16.51■□□□□ 0.23
UPF3B-202ENST00000345865 DEPTORQ8TB45 409 aa16.51■□□□□ 0.23
UPF3B-202ENST00000345865 PABPC3Q9H361 631 aaKnown RBP16.51■□□□□ 0.23
UPF3B-202ENST00000345865 SEMA4AQ9H3S1 761 aa16.51■□□□□ 0.23
UPF3B-202ENST00000345865 ADGRA2Q96PE1 1338 aa16.51■□□□□ 0.23
UPF3B-202ENST00000345865 CNTNAP2Q9UHC6 1331 aa16.51■□□□□ 0.23
UPF3B-202ENST00000345865 SOWAHBA6NEL2 793 aa16.5■□□□□ 0.23
UPF3B-202ENST00000345865 FSCN2O14926 492 aa16.5■□□□□ 0.23
UPF3B-202ENST00000345865 TP73O15350 636 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms